Wall clock time and date at job start Tue Mar 31 2020 06:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99899 * 2 1 4 4 H 1.48503 * 109.47036 * 269.99534 * 3 2 1 5 5 H 1.48493 * 109.47347 * 29.99793 * 3 2 1 6 6 H 1.48509 * 109.46950 * 149.99965 * 3 2 1 7 7 C 1.37878 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99920 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46841 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46668 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46833 * 179.97438 * 11 10 9 13 13 C 1.46897 * 110.99741 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.34687 * 35.67543 * 13 12 11 15 15 C 1.54528 * 110.27021 * 157.92637 * 13 12 11 16 16 C 1.54343 * 102.31825 * 145.54793 * 15 13 12 17 17 C 1.51373 * 105.17425 * 333.44255 * 16 15 13 18 18 C 1.38261 * 109.75010 * 17.18330 * 17 16 15 19 19 C 1.38455 * 119.84804 * 180.02562 * 18 17 16 20 20 C 1.38143 * 120.21724 * 359.96362 * 19 18 17 21 21 C 1.38217 * 119.93352 * 0.02562 * 20 19 18 22 22 C 1.38142 * 119.93433 * 0.02562 * 21 20 19 23 23 N 1.48019 * 119.89223 * 179.97438 * 22 21 20 24 24 O 1.21795 * 120.00051 * 359.97438 * 23 22 21 25 25 O 1.21798 * 120.00158 * 179.97438 * 23 22 21 26 26 H 0.96997 * 119.99530 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47060 * 59.99938 * 9 7 2 28 28 H 1.09001 * 109.47176 * 299.99711 * 9 7 2 29 29 H 1.08995 * 109.47430 * 60.00059 * 10 9 7 30 30 H 1.09000 * 109.47395 * 299.98947 * 10 9 7 31 31 H 1.08995 * 109.47087 * 59.99922 * 11 10 9 32 32 H 1.09001 * 109.47321 * 299.99589 * 11 10 9 33 33 H 1.00901 * 110.99757 * 56.04837 * 12 11 10 34 34 H 1.08998 * 111.03442 * 27.26509 * 15 13 12 35 35 H 1.08995 * 110.85040 * 263.74241 * 15 13 12 36 36 H 1.08997 * 110.30404 * 214.52311 * 16 15 13 37 37 H 1.09001 * 110.39028 * 92.40833 * 16 15 13 38 38 H 1.07999 * 119.88969 * 179.97438 * 19 18 17 39 39 H 1.07997 * 120.03342 * 180.02562 * 20 19 18 40 40 H 1.08001 * 120.02910 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4348 -6.1037 0.0031 13 6 1.7345 -7.3949 0.0043 14 1 0.8239 -7.3328 -0.5915 15 6 2.6600 -8.5064 -0.5398 16 6 2.2323 -9.7303 0.2976 17 6 1.6899 -9.1567 1.5892 18 6 1.4073 -7.8137 1.4217 19 6 0.8979 -7.0795 2.4792 20 6 0.6707 -7.6847 3.7001 21 6 0.9531 -9.0273 3.8675 22 6 1.4624 -9.7613 2.8138 23 7 1.7649 -11.1989 2.9943 24 8 1.5653 -11.7328 4.0707 25 8 2.2136 -11.8480 2.0665 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5568 0.8903 29 1 2.8712 -3.6039 0.8922 30 1 2.8725 -3.6048 -0.8878 31 1 0.8539 -5.0455 -0.8877 32 1 0.8532 -5.0442 0.8923 33 1 3.0696 -6.0362 0.7845 34 1 3.7080 -8.2638 -0.3641 35 1 2.4766 -8.6793 -1.6002 36 1 3.0917 -10.3696 0.4993 37 1 1.4564 -10.2932 -0.2213 38 1 0.6772 -6.0303 2.3492 39 1 0.2729 -7.1093 4.5229 40 1 0.7765 -9.5019 4.8215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594493946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:41 Heat of formation + Delta-G solvation = -10.005860 kcal Electronic energy + Delta-G solvation = -22269.727686 eV Core-core repulsion = 18858.023406 eV Total energy + Delta-G solvation = -3411.704280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.33987 -41.52868 -38.12791 -37.70175 -36.47086 -35.07200 -33.39918 -32.25450 -30.42345 -28.75622 -27.41372 -26.59033 -24.14513 -23.63069 -22.56128 -22.28124 -21.64456 -19.73682 -19.60197 -18.67394 -18.48489 -17.59443 -16.92892 -16.56013 -16.52070 -16.33464 -15.48052 -15.32512 -14.85633 -14.36265 -14.12377 -13.97350 -13.71096 -13.40584 -13.17723 -12.96001 -12.88123 -12.74310 -12.63830 -12.59757 -12.43685 -12.32379 -12.17641 -12.06069 -11.89183 -11.53704 -11.35792 -11.05826 -10.65181 -10.54708 -10.10795 -9.39264 -8.20362 -6.30528 -1.26178 -0.15077 0.25408 0.34719 1.40598 1.41051 1.52069 2.16817 2.40845 2.96069 3.07166 3.13368 3.30876 3.54030 3.73813 3.84348 3.85418 4.06637 4.17800 4.28364 4.36779 4.45763 4.51158 4.56157 4.65908 4.71490 4.90461 4.92362 4.98792 5.02820 5.10224 5.15305 5.17741 5.21694 5.26220 5.45885 5.53625 5.77092 5.87444 5.99665 6.27568 6.37461 6.48789 6.86955 7.38866 8.91228 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031839 B = 0.002791 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.202211 B =10031.489759 C =10600.383222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.094 4.094 11 C 0.067 3.933 12 N -0.674 5.674 13 C 0.127 3.873 14 H 0.103 0.897 15 C -0.099 4.099 16 C -0.085 4.085 17 C -0.031 4.031 18 C -0.133 4.133 19 C -0.057 4.057 20 C -0.109 4.109 21 C -0.056 4.056 22 C -0.055 4.055 23 N 0.033 4.967 24 O -0.192 6.192 25 O -0.169 6.169 26 H 0.263 0.737 27 H -0.009 1.009 28 H -0.006 1.006 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.346 0.654 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.145 0.855 39 H 0.178 0.822 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -19.537 4.712 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.062 4.062 12 N -0.303 5.303 13 C 0.016 3.984 14 H 0.121 0.879 15 C -0.136 4.136 16 C -0.122 4.122 17 C -0.033 4.033 18 C -0.135 4.135 19 C -0.075 4.075 20 C -0.127 4.127 21 C -0.075 4.075 22 C -0.138 4.138 23 N 0.547 4.453 24 O -0.401 6.401 25 O -0.385 6.385 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.013 0.987 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.165 0.835 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.163 0.837 39 H 0.195 0.805 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.176 -18.740 3.953 19.275 hybrid contribution -0.243 0.581 1.123 1.288 sum 1.934 -18.159 5.076 18.954 Atomic orbital electron populations 1.70082 1.07682 1.27704 1.51841 1.25935 0.95743 1.03205 0.94848 0.85509 0.78739 0.78735 0.78457 1.19917 1.20786 1.18797 1.21715 0.93514 0.92542 1.50265 0.92393 1.18958 0.94394 0.92907 0.94895 1.21381 0.98035 0.92995 1.00765 1.22015 0.94044 0.89842 1.00311 1.60639 1.19122 1.00517 1.50002 1.21398 0.97913 0.90001 0.89039 0.87939 1.22403 0.99933 0.90577 1.00725 1.21391 1.02254 0.98755 0.89827 1.20679 0.94035 0.95048 0.93524 1.21745 1.00034 0.92988 0.98780 1.21568 0.92542 1.01338 0.92042 1.21468 0.99734 0.92979 0.98566 1.21275 0.93467 0.94515 0.98220 1.21042 1.14676 0.79942 0.98170 1.43910 0.97490 1.04059 0.99850 1.94510 1.57623 1.73406 1.14595 1.94493 1.45678 1.64345 1.34010 0.92810 0.99036 0.98727 0.93121 0.92995 0.91586 0.94744 0.83538 0.89807 0.87888 0.88677 0.87737 0.83749 0.80459 0.81398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.03 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.53 5.41 30.60 0.17 -3.37 16 11 C 0.07 1.93 5.46 86.31 0.47 2.40 16 12 N -0.67 -15.53 6.27 -491.63 -3.08 -18.61 16 13 C 0.13 2.38 3.19 44.90 0.14 2.53 16 14 H 0.10 1.93 7.86 -2.39 -0.02 1.91 16 15 C -0.10 -1.51 6.78 31.57 0.21 -1.30 16 16 C -0.09 -1.38 5.55 30.52 0.17 -1.21 16 17 C -0.03 -0.60 6.01 -19.59 -0.12 -0.72 16 18 C -0.13 -2.51 5.52 -19.59 -0.11 -2.62 16 19 C -0.06 -1.00 9.68 22.30 0.22 -0.79 16 20 C -0.11 -1.59 10.05 22.24 0.22 -1.37 16 21 C -0.06 -0.94 9.55 22.24 0.21 -0.73 16 22 C -0.06 -1.17 6.85 36.40 0.25 -0.92 16 23 N 0.03 0.82 4.45 -46.39 -0.21 0.61 16 24 O -0.19 -5.03 18.44 18.89 0.35 -4.68 16 25 O -0.17 -4.35 16.76 18.89 0.32 -4.04 16 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 32 H 0.03 0.95 5.65 -2.39 -0.01 0.93 16 33 H 0.35 7.66 8.48 -89.69 -0.76 6.90 16 34 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.59 7.14 -2.39 -0.02 1.58 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.14 2.61 5.87 -2.91 -0.02 2.60 16 39 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.17 2.27 7.60 -2.91 -0.02 2.25 16 Total: -1.00 -65.08 335.38 2.67 -62.41 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.30 Total: 10.07 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 2.68 Total: -35.97 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -3.00 Total: -73.17 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.66 Total: -8.72 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -65.08 2.67 -62.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594493946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.405 kcal (2) G-P(sol) polarization free energy of solvation -65.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds