Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47235 * 2 1 4 4 C 1.50696 * 109.47374 * 239.99958 * 2 1 3 5 5 H 1.08001 * 120.00062 * 240.00261 * 4 2 1 6 6 C 1.37874 * 120.00001 * 59.99958 * 4 2 1 7 7 N 1.31520 * 120.00140 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00212 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47013 * 59.99818 * 8 6 4 10 10 H 1.48502 * 109.47188 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46958 * 299.99783 * 8 6 4 12 12 C 1.53009 * 109.47020 * 119.99938 * 2 1 3 13 13 N 1.46500 * 109.47131 * 299.99986 * 12 2 1 14 14 N 1.28729 * 125.34264 * 89.97822 * 13 12 2 15 15 N 1.28978 * 108.94439 * 180.02562 * 14 13 12 16 16 C 1.34048 * 107.27025 * 0.02562 * 15 14 13 17 17 C 1.48467 * 126.67699 * 179.97438 * 16 15 14 18 18 C 1.39335 * 120.10255 * 0.02562 * 17 16 15 19 19 C 1.38012 * 119.93295 * 179.72591 * 18 17 16 20 20 C 1.38297 * 120.14500 * 359.97438 * 19 18 17 21 21 C 1.38517 * 120.21137 * 359.97438 * 20 19 18 22 22 F 1.35095 * 119.96699 * 180.02562 * 21 20 19 23 23 C 1.38277 * 120.06722 * 0.04152 * 21 20 19 24 24 N 1.28876 * 125.34012 * 270.27218 * 13 12 2 25 25 H 1.09001 * 109.47054 * 299.99889 * 1 2 3 26 26 H 1.08989 * 109.47223 * 59.99774 * 1 2 3 27 27 H 1.08995 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47014 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46767 * 300.00459 * 3 2 1 30 30 H 1.09001 * 109.47009 * 60.00083 * 3 2 1 31 31 H 0.96995 * 120.00784 * 179.97438 * 7 6 4 32 32 H 1.09009 * 109.46530 * 180.02562 * 12 2 1 33 33 H 1.08990 * 109.46863 * 60.00477 * 12 2 1 34 34 H 1.08005 * 120.03049 * 359.69790 * 18 17 16 35 35 H 1.08002 * 119.93047 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.89523 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.07803 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8259 -2.5202 -4.0076 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1208 -4.0081 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4455 14 7 0.4459 -0.2856 3.0532 15 7 0.3305 0.5082 4.0633 16 6 1.4179 1.2919 4.0797 17 6 1.7252 2.3617 5.0622 18 6 0.8368 2.6331 6.1006 19 6 1.1286 3.6245 7.0153 20 6 2.3013 4.3490 6.9037 21 6 3.1894 4.0835 5.8743 22 9 4.3338 4.7939 5.7704 23 6 2.9056 3.0924 4.9529 24 7 2.1592 0.9310 3.0513 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7087 1.1613 -3.4843 32 1 3.1301 -0.7208 1.2495 33 1 1.6767 -1.7489 1.2492 34 1 -0.0796 2.0684 6.1894 35 1 0.4401 3.8345 7.8204 36 1 2.5255 5.1242 7.6215 37 1 3.5976 2.8855 4.1500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594881294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = 101.783691 kcal Electronic energy + Delta-G solvation = -22470.709389 eV Core-core repulsion = 18972.685114 eV Total energy + Delta-G solvation = -3498.024275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.99429 -43.86723 -39.05936 -36.77058 -33.87024 -33.23104 -31.58581 -30.79185 -30.23990 -26.93948 -25.88473 -25.37125 -24.37307 -23.31164 -21.94724 -21.58642 -19.37122 -17.93571 -17.15813 -16.32231 -16.30012 -16.11184 -15.90920 -15.68227 -14.89882 -14.76355 -13.90212 -13.65865 -13.37030 -13.25500 -13.08302 -12.68610 -12.47872 -12.12098 -11.64356 -11.50885 -11.43592 -11.36258 -10.93468 -10.91701 -10.71779 -10.62333 -10.57065 -10.34068 -10.31133 -9.75290 -9.56450 -9.03722 -9.00280 -8.62044 -8.52392 -6.17237 -4.31520 0.66789 1.03800 1.78138 2.50357 2.57248 3.20575 3.26530 3.28187 3.59649 3.78071 4.17078 4.26605 4.47043 4.76717 4.88365 5.02370 5.09582 5.19454 5.33560 5.58706 5.72087 5.80310 5.88075 5.94836 5.97105 6.10645 6.24871 6.30226 6.49801 6.66938 6.70213 6.73135 6.84231 6.90967 7.19741 7.38446 7.53162 7.83813 7.92718 8.15325 8.67257 8.78350 9.35613 10.84145 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.027027 B = 0.003655 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.740406 B = 7658.032157 C = 8233.470182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 C -0.132 4.132 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.071 3.929 7 N -0.879 5.879 8 Si 0.900 3.100 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.128 3.872 13 N -0.100 5.100 14 N -0.058 5.058 15 N -0.289 5.289 16 C 0.175 3.825 17 C 0.036 3.964 18 C -0.094 4.094 19 C -0.093 4.093 20 C -0.146 4.146 21 C 0.097 3.903 22 F -0.138 7.138 23 C -0.121 4.121 24 N -0.287 5.287 25 H 0.008 0.992 26 H 0.089 0.911 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.088 0.912 30 H 0.008 0.992 31 H 0.264 0.736 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.896 4.203 15.247 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 C -0.189 4.189 4 C -0.555 4.555 5 H 0.080 0.920 6 C -0.132 4.132 7 N -0.516 5.516 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.010 3.990 13 N -0.013 5.013 14 N -0.050 5.050 15 N -0.160 5.160 16 C -0.104 4.104 17 C 0.032 3.968 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.166 4.166 21 C 0.078 3.922 22 F -0.116 7.116 23 C -0.142 4.142 24 N -0.138 5.138 25 H 0.027 0.973 26 H 0.108 0.892 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.107 0.893 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.509 3.773 14.729 15.280 hybrid contribution 0.821 0.047 -0.821 1.162 sum 2.330 3.820 13.909 14.610 Atomic orbital electron populations 1.21859 0.96779 0.99763 1.00729 1.18542 0.93718 0.93322 0.88687 1.21842 0.98781 0.97660 1.00655 1.20750 1.32826 1.12638 0.89267 0.92035 1.24871 0.94512 0.94794 0.98988 1.69804 1.35661 1.22366 1.23814 0.86533 0.79216 0.79721 0.81830 1.20095 1.21167 1.20115 1.23220 1.00835 0.96281 0.78689 1.50548 1.10626 1.19546 1.20608 1.78892 1.04844 1.19127 1.02105 1.75909 1.20784 1.05730 1.13577 1.23337 0.91153 1.00141 0.95810 1.17004 0.94439 0.92540 0.92776 1.21285 0.99548 0.97549 0.93063 1.20923 0.96248 0.94910 0.99010 1.21251 0.94873 1.01999 0.98433 1.17463 0.84057 0.93504 0.97223 1.91512 1.47476 1.76772 1.95880 1.21182 0.97900 0.95364 0.99782 1.74875 1.25220 1.05927 1.07828 0.97289 0.89237 0.94821 0.94959 0.89321 0.97270 0.92566 0.87701 0.87467 0.83998 0.84347 0.84530 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 7.95 37.16 0.30 -2.81 16 2 C 0.06 1.34 0.57 -155.66 -0.09 1.25 16 3 C -0.13 -3.06 7.94 37.16 0.30 -2.76 16 4 C -0.52 -12.56 8.01 -34.44 -0.28 -12.84 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -22.97 9.35 55.43 0.52 -22.46 16 8 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.13 2.43 5.43 -4.04 -0.02 2.41 16 13 N -0.10 -1.94 3.12 -10.63 -0.03 -1.97 16 14 N -0.06 -1.14 12.03 60.35 0.73 -0.42 16 15 N -0.29 -5.41 12.23 32.16 0.39 -5.02 16 16 C 0.17 3.08 7.94 -156.30 -1.24 1.84 16 17 C 0.04 0.51 5.88 -104.90 -0.62 -0.11 16 18 C -0.09 -1.09 9.70 -39.26 -0.38 -1.47 16 19 C -0.09 -0.83 10.03 -39.64 -0.40 -1.23 16 20 C -0.15 -1.38 10.02 -39.46 -0.40 -1.78 16 21 C 0.10 1.15 7.29 -39.46 -0.29 0.86 16 22 F -0.14 -1.71 17.26 2.25 0.04 -1.67 16 23 C -0.12 -1.63 9.68 -39.19 -0.38 -2.01 16 24 N -0.29 -5.43 10.63 32.17 0.34 -5.08 16 25 H 0.01 0.19 6.78 -51.93 -0.35 -0.16 16 26 H 0.09 2.30 6.07 -51.94 -0.32 1.98 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 30 H 0.01 0.19 6.77 -51.93 -0.35 -0.16 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 33 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 34 H 0.14 1.55 7.89 -52.48 -0.41 1.14 16 35 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.15 2.02 7.88 -52.49 -0.41 1.61 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -27.01 317.27 -6.08 -33.09 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.24 Total: 1.02 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -3.59 Total: -16.95 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 1.95 Total: -34.95 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.01 -6.08 -33.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594881294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.877 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds