Wall clock time and date at job start Tue Mar 31 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99855 * 2 1 4 4 O 1.20826 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99702 * 180.02562 * 3 2 1 6 6 C 1.50695 * 109.47073 * 179.97438 * 5 3 2 7 7 C 1.38264 * 119.94666 * 89.99737 * 6 5 3 8 8 C 1.38147 * 120.06029 * 179.72516 * 7 6 5 9 9 C 1.38739 * 119.93806 * 0.27684 * 8 7 6 10 10 O 1.35898 * 120.05186 * 179.97438 * 9 8 7 11 11 C 1.42898 * 117.00064 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47276 * 180.02562 * 11 10 9 13 13 C 1.50697 * 115.55253 * 65.11443 * 12 11 10 14 14 H 1.08007 * 119.99371 * 266.11384 * 13 12 11 15 15 C 1.37869 * 120.00301 * 86.10921 * 13 12 11 16 16 N 1.31512 * 119.99989 * 353.70905 * 15 13 12 17 17 Si 1.86799 * 120.00127 * 173.70633 * 15 13 12 18 18 H 1.48502 * 109.46858 * 60.00266 * 17 15 13 19 19 H 1.48497 * 109.47165 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47433 * 300.00169 * 17 15 13 21 21 C 1.53002 * 117.49927 * 279.44322 * 12 11 10 22 22 C 1.53003 * 117.49624 * 210.78414 * 12 11 10 23 23 C 1.38728 * 119.88899 * 359.97438 * 9 8 7 24 24 C 1.38140 * 119.94824 * 0.02562 * 23 9 8 25 25 H 1.08998 * 109.46828 * 60.00534 * 1 2 3 26 26 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47184 * 300.00019 * 1 2 3 28 28 H 1.08997 * 109.47452 * 59.99530 * 5 3 2 29 29 H 1.09006 * 109.46923 * 299.99604 * 5 3 2 30 30 H 1.08004 * 119.97309 * 0.02562 * 7 6 5 31 31 H 1.08000 * 120.02990 * 180.29521 * 8 7 6 32 32 H 1.09004 * 109.47338 * 300.00528 * 11 10 9 33 33 H 1.09003 * 109.46999 * 60.00590 * 11 10 9 34 34 H 0.97006 * 120.00045 * 179.97438 * 16 15 13 35 35 H 1.09004 * 117.49828 * 359.97438 * 21 12 11 36 36 H 1.08992 * 117.50567 * 145.02096 * 21 12 11 37 37 H 1.09002 * 117.49588 * 214.97576 * 22 12 11 38 38 H 1.08991 * 117.50099 * 359.97406 * 22 12 11 39 39 H 1.08007 * 120.02180 * 180.02562 * 23 9 8 40 40 H 1.07995 * 119.97403 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 3.9936 2.7199 -0.0011 7 6 4.1897 3.3821 1.1967 8 6 4.5869 4.7052 1.1990 9 6 4.7835 5.3712 -0.0021 10 8 5.1738 6.6730 -0.0026 11 6 5.3575 7.2947 -1.2760 12 6 5.7941 8.7474 -1.0761 13 6 7.1405 8.9380 -0.4267 14 1 7.2097 9.0756 0.6424 15 6 8.2839 8.9366 -1.1971 16 7 8.2134 8.6465 -2.4778 17 14 9.9331 9.3469 -0.4217 18 1 10.2278 8.3724 0.6595 19 1 10.9972 9.2758 -1.4549 20 1 9.8854 10.7177 0.1471 21 6 4.7055 9.7751 -0.7601 22 6 5.3717 9.7645 -2.1382 23 6 4.5810 4.7061 -1.2026 24 6 4.1839 3.3830 -1.1994 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.9557 0.7808 -0.8907 29 1 3.9564 0.7806 0.8892 30 1 4.0369 2.8631 2.1315 31 1 4.7446 5.2206 2.1349 32 1 6.1247 6.7587 -1.8348 33 1 4.4197 7.2700 -1.8311 34 1 9.0179 8.6459 -3.0200 35 1 3.6783 9.4164 -0.6950 36 1 4.9633 10.5892 -0.0828 37 1 6.0676 10.5717 -2.3669 38 1 4.7832 9.3987 -2.9795 39 1 4.7338 5.2223 -2.1389 40 1 4.0265 2.8647 -2.1337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596239727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:10 Heat of formation + Delta-G solvation = -76.952522 kcal Electronic energy + Delta-G solvation = -22216.321049 eV Core-core repulsion = 18769.420993 eV Total energy + Delta-G solvation = -3446.900056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66032 -39.55162 -37.58362 -36.53616 -35.80847 -32.26559 -31.94904 -30.76098 -28.54889 -27.14837 -26.03632 -25.23498 -22.47104 -21.93167 -21.14014 -20.45944 -19.16712 -17.76185 -17.57041 -16.76333 -16.68547 -16.27160 -15.27903 -15.00980 -14.94846 -14.48155 -14.10546 -13.93058 -13.75260 -13.60885 -13.14417 -12.95404 -12.44956 -12.31766 -12.00469 -11.90937 -11.62770 -11.36795 -11.00501 -10.99849 -10.93915 -10.65404 -10.55326 -10.46445 -10.30202 -10.15058 -9.58737 -8.86716 -8.70032 -8.46253 -8.21716 -7.64544 -6.07709 -4.12042 1.61120 1.65777 2.10365 2.66764 3.30955 3.34958 3.38561 3.94272 4.07622 4.39766 4.58812 4.84132 4.86308 4.89416 4.94800 5.15508 5.21374 5.27148 5.29033 5.31800 5.35942 5.61614 5.81462 5.95462 5.96677 6.18748 6.20273 6.28389 6.29916 6.48973 6.51876 6.65463 6.74047 6.74778 6.79511 7.01842 7.13510 7.35077 7.43697 7.63834 7.86362 8.17583 8.40493 8.89409 9.53662 11.01797 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.003134 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.920646 B = 8930.762442 C = 9337.289257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.455 3.545 4 O -0.494 6.494 5 C -0.060 4.060 6 C -0.144 4.144 7 C -0.063 4.063 8 C -0.163 4.163 9 C 0.158 3.842 10 O -0.294 6.294 11 C 0.104 3.896 12 C 0.040 3.960 13 C -0.488 4.488 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.893 3.107 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.206 4.206 22 C -0.145 4.145 23 C -0.214 4.214 24 C -0.060 4.060 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.712 -16.283 2.980 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.297 3.703 4 O -0.379 6.379 5 C -0.097 4.097 6 C -0.144 4.144 7 C -0.081 4.081 8 C -0.181 4.181 9 C 0.110 3.890 10 O -0.206 6.206 11 C 0.030 3.970 12 C 0.039 3.961 13 C -0.526 4.526 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.243 4.243 22 C -0.183 4.183 23 C -0.232 4.232 24 C -0.078 4.078 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.148 0.852 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.781 -15.841 2.953 19.388 hybrid contribution 0.658 0.209 -0.045 0.692 sum -10.122 -15.633 2.909 18.849 Atomic orbital electron populations 1.23232 0.76591 1.03447 1.02584 1.86507 1.23294 1.33902 1.84546 1.24003 0.92312 0.81226 0.72720 1.90713 1.67002 1.36251 1.43963 1.20177 0.87107 0.96220 1.06189 1.18933 1.07505 0.94048 0.93914 1.20643 0.96982 0.93568 0.96929 1.20381 1.06496 0.94557 0.96686 1.19307 0.91067 0.84985 0.93673 1.86201 1.80140 1.20002 1.34251 1.22647 0.97472 0.95453 0.81456 1.18715 0.93426 0.84708 0.99217 1.20360 0.88609 1.49967 0.93636 0.91971 1.24990 0.98964 0.94542 0.94879 1.69983 1.28897 1.47475 1.05697 0.86647 0.83184 0.79163 0.78997 1.20090 1.21283 1.20147 1.23010 0.96598 1.04658 1.00012 1.22531 1.01960 1.03330 0.90473 1.21306 1.07900 0.96113 0.97925 1.20667 0.96412 0.93799 0.96895 0.91961 0.88264 0.91967 0.87130 0.87097 0.86080 0.85258 0.91289 0.95121 0.92912 0.91517 0.90110 0.89466 0.91737 0.85227 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.37 -3.66 10.57 -39.25 -0.41 -4.07 16 3 C 0.46 5.34 7.95 36.01 0.29 5.63 16 4 O -0.49 -7.62 15.78 -18.75 -0.30 -7.91 16 5 C -0.06 -0.58 5.94 -29.04 -0.17 -0.75 16 6 C -0.14 -1.93 4.38 -104.60 -0.46 -2.39 16 7 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 8 C -0.16 -2.73 9.99 -39.43 -0.39 -3.12 16 9 C 0.16 3.05 6.69 -39.22 -0.26 2.79 16 10 O -0.29 -6.64 10.06 -19.42 -0.20 -6.84 16 11 C 0.10 2.40 4.56 37.16 0.17 2.57 16 12 C 0.04 0.99 1.62 -155.66 -0.25 0.74 16 13 C -0.49 -13.44 8.77 -34.44 -0.30 -13.75 16 14 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 15 C 0.07 1.89 5.38 -17.82 -0.10 1.79 16 16 N -0.88 -24.66 12.88 55.43 0.71 -23.95 16 17 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 C -0.21 -4.57 9.96 -26.69 -0.27 -4.83 16 22 C -0.15 -3.38 9.37 -26.69 -0.25 -3.63 16 23 C -0.21 -3.74 9.04 -39.44 -0.36 -4.10 16 24 C -0.06 -0.88 9.69 -39.60 -0.38 -1.26 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 28 H 0.11 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.11 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.07 1.69 7.66 -51.93 -0.40 1.29 16 33 H 0.03 0.65 7.61 -51.93 -0.40 0.25 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.13 2.25 6.30 -52.48 -0.33 1.92 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -31.51 348.76 -7.75 -39.26 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.74 Total: 2.34 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.05 Total: -20.25 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.71 Total: -23.95 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.91 Total: -18.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.51 -7.75 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596239727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.692 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds