Wall clock time and date at job start Tue Mar 31 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 116.99855 * 2 1 4 4 O 1.20826 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99702 * 180.02562 * 3 2 1 6 6 C 1.50695 * 109.47073 * 179.97438 * 5 3 2 7 7 C 1.38264 * 119.94666 * 89.99737 * 6 5 3 8 8 C 1.38147 * 120.06029 * 179.72516 * 7 6 5 9 9 C 1.38739 * 119.93806 * 0.27684 * 8 7 6 10 10 O 1.35898 * 120.05186 * 179.97438 * 9 8 7 11 11 C 1.42898 * 117.00064 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47276 * 180.02562 * 11 10 9 13 13 C 1.50697 * 115.55253 * 65.11443 * 12 11 10 14 14 H 1.08007 * 119.99371 * 266.11384 * 13 12 11 15 15 C 1.37869 * 120.00301 * 86.10921 * 13 12 11 16 16 N 1.31512 * 119.99989 * 353.70905 * 15 13 12 17 17 Si 1.86799 * 120.00127 * 173.70633 * 15 13 12 18 18 H 1.48502 * 109.46858 * 60.00266 * 17 15 13 19 19 H 1.48497 * 109.47165 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47433 * 300.00169 * 17 15 13 21 21 C 1.53002 * 117.49927 * 279.44322 * 12 11 10 22 22 C 1.53003 * 117.49624 * 210.78414 * 12 11 10 23 23 C 1.38728 * 119.88899 * 359.97438 * 9 8 7 24 24 C 1.38140 * 119.94824 * 0.02562 * 23 9 8 25 25 H 1.08998 * 109.46828 * 60.00534 * 1 2 3 26 26 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47184 * 300.00019 * 1 2 3 28 28 H 1.08997 * 109.47452 * 59.99530 * 5 3 2 29 29 H 1.09006 * 109.46923 * 299.99604 * 5 3 2 30 30 H 1.08004 * 119.97309 * 0.02562 * 7 6 5 31 31 H 1.08000 * 120.02990 * 180.29521 * 8 7 6 32 32 H 1.09004 * 109.47338 * 300.00528 * 11 10 9 33 33 H 1.09003 * 109.46999 * 60.00590 * 11 10 9 34 34 H 0.97006 * 120.00045 * 179.97438 * 16 15 13 35 35 H 1.09004 * 117.49828 * 359.97438 * 21 12 11 36 36 H 1.08992 * 117.50567 * 145.02096 * 21 12 11 37 37 H 1.09002 * 117.49588 * 214.97576 * 22 12 11 38 38 H 1.08991 * 117.50099 * 359.97406 * 22 12 11 39 39 H 1.08007 * 120.02180 * 180.02562 * 23 9 8 40 40 H 1.07995 * 119.97403 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 3.9936 2.7199 -0.0011 7 6 4.1897 3.3821 1.1967 8 6 4.5869 4.7052 1.1990 9 6 4.7835 5.3712 -0.0021 10 8 5.1738 6.6730 -0.0026 11 6 5.3575 7.2947 -1.2760 12 6 5.7941 8.7474 -1.0761 13 6 7.1405 8.9380 -0.4267 14 1 7.2097 9.0756 0.6424 15 6 8.2839 8.9366 -1.1971 16 7 8.2134 8.6465 -2.4778 17 14 9.9331 9.3469 -0.4217 18 1 10.2278 8.3724 0.6595 19 1 10.9972 9.2758 -1.4549 20 1 9.8854 10.7177 0.1471 21 6 4.7055 9.7751 -0.7601 22 6 5.3717 9.7645 -2.1382 23 6 4.5810 4.7061 -1.2026 24 6 4.1839 3.3830 -1.1994 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.9557 0.7808 -0.8907 29 1 3.9564 0.7806 0.8892 30 1 4.0369 2.8631 2.1315 31 1 4.7446 5.2206 2.1349 32 1 6.1247 6.7587 -1.8348 33 1 4.4197 7.2700 -1.8311 34 1 9.0179 8.6459 -3.0200 35 1 3.6783 9.4164 -0.6950 36 1 4.9633 10.5892 -0.0828 37 1 6.0676 10.5717 -2.3669 38 1 4.7832 9.3987 -2.9795 39 1 4.7338 5.2223 -2.1389 40 1 4.0265 2.8647 -2.1337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596239727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:10 Heat of formation + Delta-G solvation = -93.675334 kcal Electronic energy + Delta-G solvation = -22217.046205 eV Core-core repulsion = 18769.420993 eV Total energy + Delta-G solvation = -3447.625211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.59329 -40.88432 -39.02875 -37.74251 -37.24111 -34.03879 -33.32301 -31.98843 -29.53388 -28.51731 -27.48016 -26.97043 -23.73609 -23.11887 -22.86768 -21.52080 -21.03062 -19.01209 -18.60899 -18.26546 -17.54726 -17.51429 -16.86901 -16.66144 -16.32804 -16.13714 -15.51811 -15.26885 -14.81144 -14.56275 -14.49458 -14.25250 -13.91966 -13.47265 -13.39872 -13.01291 -12.97181 -12.85650 -12.79779 -12.50564 -12.40409 -12.13223 -11.88593 -11.80323 -11.76270 -11.48929 -11.44666 -10.80755 -10.49564 -10.10317 -9.92432 -9.00211 -8.15391 -6.25755 0.40290 0.43200 1.24009 1.40745 1.41530 1.49299 1.86973 2.37511 2.43817 2.87030 3.13530 3.49408 3.66861 3.85372 3.98365 4.09283 4.13978 4.30509 4.34584 4.35822 4.37672 4.40921 4.45666 4.56058 4.65942 4.68699 4.74146 4.75863 4.89752 4.94362 5.10251 5.16199 5.30594 5.42833 5.45045 5.54281 5.56763 5.57903 5.72979 5.92616 6.34891 6.66401 6.77648 6.79478 7.42181 8.93289 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.003134 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.920646 B = 8930.762442 C = 9337.289257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.539 6.539 5 C -0.057 4.057 6 C -0.132 4.132 7 C -0.061 4.061 8 C -0.174 4.174 9 C 0.114 3.886 10 O -0.321 6.321 11 C 0.123 3.877 12 C 0.006 3.994 13 C -0.508 4.508 14 H 0.047 0.953 15 C 0.027 3.973 16 N -0.906 5.906 17 Si 0.950 3.050 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.270 1.270 21 C -0.186 4.186 22 C -0.142 4.142 23 C -0.228 4.228 24 C -0.064 4.064 25 H 0.056 0.944 26 H 0.132 0.868 27 H 0.058 0.942 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.157 0.843 31 H 0.131 0.869 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 -18.817 3.577 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.428 6.428 5 C -0.094 4.094 6 C -0.132 4.132 7 C -0.078 4.078 8 C -0.193 4.193 9 C 0.068 3.932 10 O -0.235 6.235 11 C 0.048 3.952 12 C 0.005 3.995 13 C -0.546 4.546 14 H 0.065 0.935 15 C -0.174 4.174 16 N -0.543 5.543 17 Si 0.776 3.224 18 H -0.200 1.200 19 H -0.205 1.205 20 H -0.196 1.196 21 C -0.223 4.223 22 C -0.179 4.179 23 C -0.247 4.247 24 C -0.082 4.082 25 H 0.075 0.925 26 H 0.151 0.849 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.174 0.826 31 H 0.149 0.851 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.385 -18.405 3.557 21.932 hybrid contribution 0.733 0.817 -0.187 1.114 sum -10.652 -17.588 3.370 20.836 Atomic orbital electron populations 1.23498 0.75256 1.05551 1.02203 1.86500 1.24596 1.32823 1.83928 1.24295 0.92915 0.80983 0.71356 1.90716 1.68096 1.37701 1.46326 1.20314 0.85894 0.93775 1.09378 1.19387 1.04807 0.95989 0.93017 1.21082 0.95401 0.92444 0.98904 1.20628 1.06839 0.95864 0.95938 1.19682 0.93884 0.84200 0.95454 1.86118 1.81612 1.22093 1.33661 1.22229 0.97045 0.94109 0.81842 1.18873 0.93562 0.86282 1.00742 1.20572 0.90483 1.50365 0.93171 0.93464 1.25656 1.01962 0.94405 0.95383 1.70074 1.29635 1.48049 1.06586 0.85736 0.79458 0.78977 0.78244 1.20045 1.20534 1.19562 1.23002 0.96906 1.03342 0.99066 1.22456 1.01861 1.02267 0.91347 1.21377 1.08800 0.97529 0.96970 1.21031 0.95534 0.92758 0.98901 0.92478 0.84943 0.92316 0.84158 0.83663 0.82555 0.85078 0.94007 0.93796 0.92881 0.89449 0.90073 0.91237 0.90091 0.86196 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.07 10.57 -51.40 -0.54 -6.61 16 3 C 0.46 9.39 7.95 71.24 0.57 9.96 16 4 O -0.54 -15.70 15.78 21.96 0.35 -15.35 16 5 C -0.06 -0.86 5.94 29.10 0.17 -0.69 16 6 C -0.13 -3.18 4.38 -19.85 -0.09 -3.27 16 7 C -0.06 -1.57 9.69 22.25 0.22 -1.36 16 8 C -0.17 -5.83 9.99 22.37 0.22 -5.61 16 9 C 0.11 4.54 6.69 22.51 0.15 4.69 16 10 O -0.32 -15.16 10.06 -92.40 -0.93 -16.09 16 11 C 0.12 5.87 4.56 71.98 0.33 6.20 16 12 C 0.01 0.30 1.62 -52.93 -0.09 0.21 16 13 C -0.51 -28.84 8.77 25.60 0.22 -28.62 16 14 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 15 C 0.03 1.47 5.38 84.65 0.46 1.93 16 16 N -0.91 -51.66 12.88 21.44 0.28 -51.38 16 17 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 C -0.19 -8.29 9.96 30.62 0.30 -7.98 16 22 C -0.14 -6.67 9.37 30.62 0.29 -6.38 16 23 C -0.23 -8.13 9.04 22.36 0.20 -7.93 16 24 C -0.06 -1.80 9.69 22.25 0.22 -1.58 16 25 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 26 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 28 H 0.14 1.39 8.09 -2.39 -0.02 1.37 16 29 H 0.15 1.30 8.09 -2.38 -0.02 1.28 16 30 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.04 2.17 7.66 -2.39 -0.02 2.15 16 33 H 0.04 1.91 7.61 -2.39 -0.02 1.90 16 34 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 35 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.07 3.47 8.14 -2.39 -0.02 3.46 16 38 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.12 4.37 6.30 -2.91 -0.02 4.35 16 40 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -70.47 348.76 6.58 -63.90 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.03 Total: 18.29 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 4.37 Total: -38.87 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.28 Total: -51.38 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.13 Total: -38.06 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.47 6.58 -63.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596239727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.779 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds