Wall clock time and date at job start Tue Mar 31 2020 06:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00541 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99489 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99511 * 180.02562 * 14 12 11 16 16 H 1.09000 * 110.27190 * 325.69653 * 15 14 12 17 17 C 1.54350 * 110.29979 * 203.62449 * 15 14 12 18 18 C 1.54594 * 102.27853 * 267.41503 * 17 15 14 19 19 C 1.51395 * 105.19563 * 333.62268 * 18 17 15 20 20 C 1.38543 * 130.32774 * 197.21112 * 19 18 17 21 21 C 1.38004 * 120.28770 * 180.02562 * 20 19 18 22 22 C 1.38746 * 119.88112 * 359.97438 * 21 20 19 23 23 O 1.35905 * 120.09012 * 180.02562 * 22 21 20 24 24 C 1.38591 * 119.81567 * 359.97438 * 22 21 20 25 25 C 1.38266 * 109.73616 * 17.20878 * 19 18 17 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 32 32 H 0.97003 * 120.00377 * 0.02562 * 14 12 11 33 33 H 1.09002 * 110.82242 * 25.67015 * 17 15 14 34 34 H 1.08994 * 110.82044 * 149.21725 * 17 15 14 35 35 H 1.09000 * 110.28730 * 214.69703 * 18 17 15 36 36 H 1.09009 * 110.30729 * 92.55781 * 18 17 15 37 37 H 1.07997 * 119.85118 * 0.02562 * 20 19 18 38 38 H 1.08006 * 120.05668 * 180.02562 * 21 20 19 39 39 H 0.96701 * 113.99487 * 269.96678 * 23 22 21 40 40 H 1.08006 * 119.91705 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1864 -6.0980 0.0007 13 8 3.4023 -6.0981 0.0003 14 7 1.5125 -7.2652 0.0008 15 6 2.2450 -8.5339 0.0009 16 1 3.1653 -8.4387 -0.5753 17 6 1.3642 -9.6609 -0.5792 18 6 0.7035 -10.2477 0.6893 19 6 1.6693 -9.9462 1.8155 20 6 1.7641 -10.4915 3.0855 21 6 2.7394 -10.0556 3.9592 22 6 3.6295 -9.0673 3.5642 23 8 4.5920 -8.6353 4.4210 24 6 3.5351 -8.5228 2.2933 25 6 2.5553 -8.9613 1.4196 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.5426 -4.9308 0.0011 32 1 0.5424 -7.2652 0.0007 33 1 0.6128 -9.2555 -1.2569 34 1 1.9754 -10.4111 -1.0807 35 1 0.5710 -11.3244 0.5828 36 1 -0.2559 -9.7644 0.8743 37 1 1.0716 -11.2611 3.3931 38 1 2.8101 -10.4836 4.9483 39 1 4.3198 -7.8911 4.9753 40 1 4.2270 -7.7531 1.9843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596555142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:46 Heat of formation + Delta-G solvation = -59.046451 kcal Electronic energy + Delta-G solvation = -22292.522060 eV Core-core repulsion = 18878.691220 eV Total energy + Delta-G solvation = -3413.830839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.76169 -39.31806 -37.92116 -35.41292 -34.68740 -33.11280 -32.65810 -31.10959 -29.48440 -28.44144 -26.63948 -24.56485 -22.98505 -21.54572 -21.19327 -20.77532 -20.51901 -18.19007 -18.02086 -16.52610 -16.33952 -16.00946 -15.57524 -15.38805 -14.99040 -14.71560 -14.48037 -14.06113 -13.81466 -13.62368 -13.47375 -13.09098 -12.56945 -12.37918 -12.28940 -11.89931 -11.54513 -11.43246 -11.24196 -11.17555 -11.04995 -10.64118 -10.61215 -10.32534 -9.95019 -9.57159 -9.25898 -9.08550 -8.96622 -8.54240 -8.49334 -8.25984 -6.09518 -4.11984 1.04297 1.19167 3.00456 3.28480 3.36139 3.41535 3.50758 3.59459 3.96227 4.24923 4.38136 4.39851 4.66292 4.80338 4.82001 4.92151 5.01679 5.16465 5.27778 5.40111 5.53677 5.56630 5.60986 5.68995 5.82983 5.94320 6.14760 6.29074 6.32818 6.39847 6.47582 6.58780 6.67278 6.77868 7.00274 7.23704 7.54029 7.57038 7.63174 7.89948 8.25921 8.43596 8.93112 9.00187 9.52879 11.02194 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.003105 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.719101 B = 9016.619565 C = 9755.420983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.595 6.595 14 N -0.742 5.742 15 C 0.202 3.798 16 H 0.098 0.902 17 C -0.126 4.126 18 C -0.081 4.081 19 C -0.100 4.100 20 C -0.099 4.099 21 C -0.140 4.140 22 C 0.098 3.902 23 O -0.499 6.499 24 C -0.106 4.106 25 C -0.092 4.092 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.393 0.607 32 H 0.394 0.606 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.391 0.609 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.046 -23.000 3.932 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.474 6.474 14 N -0.397 5.397 15 C 0.096 3.904 16 H 0.116 0.884 17 C -0.164 4.164 18 C -0.118 4.118 19 C -0.101 4.101 20 C -0.117 4.117 21 C -0.159 4.159 22 C 0.053 3.947 23 O -0.310 6.310 24 C -0.125 4.125 25 C -0.094 4.094 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.226 0.774 32 H 0.228 0.772 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.247 0.753 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.290 -23.269 3.654 23.556 hybrid contribution -0.760 1.402 0.435 1.653 sum -0.470 -21.867 4.089 22.251 Atomic orbital electron populations 1.69970 1.06090 1.26731 1.50574 1.24999 0.94896 0.99421 0.95020 0.86457 0.80203 0.83325 0.77598 1.19549 1.20942 1.20952 1.21094 0.93313 0.90351 1.51087 0.92167 1.19326 0.94260 0.91117 0.97778 1.21583 0.95612 0.80405 1.00610 1.45540 1.09831 1.05322 1.78472 1.16085 0.85719 0.80477 0.77826 1.90878 1.11680 1.86568 1.58268 1.45162 1.09192 1.04059 1.81332 1.20066 0.96190 0.82552 0.91591 0.88411 1.22642 0.99393 0.97234 0.97169 1.21111 0.97459 1.01638 0.91635 1.20623 0.97281 0.97288 0.94893 1.20416 0.98484 1.00289 0.92541 1.21295 0.95184 0.98994 1.00423 1.18335 0.89988 0.96309 0.90029 1.84809 1.38221 1.54224 1.53704 1.21104 0.98400 0.99994 0.93048 1.20772 0.95227 0.96431 0.96934 0.92931 0.95983 0.96014 0.92862 0.92770 0.77437 0.77195 0.89453 0.89344 0.90340 0.90032 0.85893 0.85410 0.75329 0.84835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.14 3.03 5.61 -4.04 -0.02 3.01 16 11 N -0.74 -13.00 5.56 -65.22 -0.36 -13.37 16 12 C 0.70 12.09 8.56 -86.92 -0.74 11.35 16 13 O -0.60 -12.53 15.98 5.29 0.08 -12.45 16 14 N -0.74 -9.32 5.10 -58.78 -0.30 -9.62 16 15 C 0.20 2.33 3.18 -68.04 -0.22 2.12 16 16 H 0.10 1.31 7.60 -51.93 -0.39 0.91 16 17 C -0.13 -0.96 6.68 -25.19 -0.17 -1.13 16 18 C -0.08 -0.59 6.78 -26.70 -0.18 -0.77 16 19 C -0.10 -1.02 6.14 -104.16 -0.64 -1.66 16 20 C -0.10 -0.95 10.03 -39.55 -0.40 -1.35 16 21 C -0.14 -1.47 9.99 -39.48 -0.39 -1.87 16 22 C 0.10 1.22 6.70 -39.26 -0.26 0.96 16 23 O -0.50 -5.83 13.51 -19.44 -0.26 -6.09 16 24 C -0.11 -1.49 9.98 -39.39 -0.39 -1.88 16 25 C -0.09 -1.14 5.76 -104.21 -0.60 -1.74 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.39 5.94 8.49 -40.82 -0.35 5.59 16 32 H 0.39 3.86 8.62 -40.82 -0.35 3.51 16 33 H 0.09 0.55 8.06 -51.93 -0.42 0.13 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 39 H 0.39 2.88 9.06 45.56 0.41 3.30 16 40 H 0.13 2.14 8.02 -52.48 -0.42 1.71 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -34.03 342.38 -9.40 -43.43 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -4.87 Total: 7.96 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -4.57 Total: -6.03 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.07 Total: -48.36 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.18 Total: -18.54 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.03 -9.40 -43.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596555142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.612 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds