Wall clock time and date at job start Tue Mar 31 2020 06:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00541 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99489 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99511 * 180.02562 * 14 12 11 16 16 H 1.09000 * 110.27190 * 325.69653 * 15 14 12 17 17 C 1.54350 * 110.29979 * 203.62449 * 15 14 12 18 18 C 1.54594 * 102.27853 * 267.41503 * 17 15 14 19 19 C 1.51395 * 105.19563 * 333.62268 * 18 17 15 20 20 C 1.38543 * 130.32774 * 197.21112 * 19 18 17 21 21 C 1.38004 * 120.28770 * 180.02562 * 20 19 18 22 22 C 1.38746 * 119.88112 * 359.97438 * 21 20 19 23 23 O 1.35905 * 120.09012 * 180.02562 * 22 21 20 24 24 C 1.38591 * 119.81567 * 359.97438 * 22 21 20 25 25 C 1.38266 * 109.73616 * 17.20878 * 19 18 17 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 32 32 H 0.97003 * 120.00377 * 0.02562 * 14 12 11 33 33 H 1.09002 * 110.82242 * 25.67015 * 17 15 14 34 34 H 1.08994 * 110.82044 * 149.21725 * 17 15 14 35 35 H 1.09000 * 110.28730 * 214.69703 * 18 17 15 36 36 H 1.09009 * 110.30729 * 92.55781 * 18 17 15 37 37 H 1.07997 * 119.85118 * 0.02562 * 20 19 18 38 38 H 1.08006 * 120.05668 * 180.02562 * 21 20 19 39 39 H 0.96701 * 113.99487 * 269.96678 * 23 22 21 40 40 H 1.08006 * 119.91705 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1864 -6.0980 0.0007 13 8 3.4023 -6.0981 0.0003 14 7 1.5125 -7.2652 0.0008 15 6 2.2450 -8.5339 0.0009 16 1 3.1653 -8.4387 -0.5753 17 6 1.3642 -9.6609 -0.5792 18 6 0.7035 -10.2477 0.6893 19 6 1.6693 -9.9462 1.8155 20 6 1.7641 -10.4915 3.0855 21 6 2.7394 -10.0556 3.9592 22 6 3.6295 -9.0673 3.5642 23 8 4.5920 -8.6353 4.4210 24 6 3.5351 -8.5228 2.2933 25 6 2.5553 -8.9613 1.4196 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.5426 -4.9308 0.0011 32 1 0.5424 -7.2652 0.0007 33 1 0.6128 -9.2555 -1.2569 34 1 1.9754 -10.4111 -1.0807 35 1 0.5710 -11.3244 0.5828 36 1 -0.2559 -9.7644 0.8743 37 1 1.0716 -11.2611 3.3931 38 1 2.8101 -10.4836 4.9483 39 1 4.3198 -7.8911 4.9753 40 1 4.2270 -7.7531 1.9843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596555142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:44 Heat of formation + Delta-G solvation = -84.287876 kcal Electronic energy + Delta-G solvation = -22293.616610 eV Core-core repulsion = 18878.691220 eV Total energy + Delta-G solvation = -3414.925390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.71826 -40.57181 -38.85784 -36.71009 -36.10001 -34.84608 -33.95131 -32.09656 -31.21927 -29.27090 -27.66791 -26.40183 -23.78861 -23.13565 -22.31923 -21.90738 -21.65408 -19.48907 -19.03267 -18.44518 -17.44883 -17.06804 -16.66205 -16.50518 -16.41805 -16.11510 -15.77422 -15.21281 -15.13014 -14.80921 -14.57611 -14.29464 -14.27085 -13.40306 -13.22922 -13.21302 -12.95169 -12.65771 -12.52058 -12.31560 -12.25782 -12.09029 -11.96946 -11.67511 -11.53735 -11.49541 -11.20181 -10.61402 -10.34677 -9.91820 -9.74736 -9.36677 -8.24798 -6.34900 0.19815 0.30219 1.40638 1.41616 1.54764 1.78779 2.16075 2.40782 2.64256 3.10045 3.14984 3.42465 3.50159 3.62319 4.03634 4.07528 4.14691 4.33163 4.38600 4.46756 4.50687 4.68353 4.73993 4.83156 4.85499 4.96472 5.08383 5.10750 5.20381 5.30435 5.34803 5.44203 5.51180 5.55175 5.58637 5.62223 5.78503 5.87456 6.05714 6.16846 6.76271 6.78251 7.13935 7.34518 7.61004 8.87309 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.003105 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.719101 B = 9016.619565 C = 9755.420983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.733 5.733 12 C 0.697 3.303 13 O -0.637 6.637 14 N -0.719 5.719 15 C 0.194 3.806 16 H 0.070 0.930 17 C -0.115 4.115 18 C -0.076 4.076 19 C -0.095 4.095 20 C -0.094 4.094 21 C -0.140 4.140 22 C 0.082 3.918 23 O -0.513 6.513 24 C -0.139 4.139 25 C -0.114 4.114 26 H 0.266 0.734 27 H 0.010 0.990 28 H 0.008 0.992 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.407 0.593 32 H 0.412 0.588 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.406 0.594 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 -24.776 4.087 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.012 4.012 10 C 0.037 3.963 11 N -0.388 5.388 12 C 0.397 3.603 13 O -0.518 6.518 14 N -0.376 5.376 15 C 0.089 3.911 16 H 0.088 0.912 17 C -0.152 4.152 18 C -0.112 4.112 19 C -0.096 4.096 20 C -0.112 4.112 21 C -0.158 4.158 22 C 0.038 3.962 23 O -0.326 6.326 24 C -0.158 4.158 25 C -0.115 4.115 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.242 0.758 32 H 0.249 0.751 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.176 0.824 38 H 0.168 0.832 39 H 0.264 0.736 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.452 -25.086 3.814 25.415 hybrid contribution -0.229 1.891 0.423 1.951 sum -1.681 -23.194 4.237 23.638 Atomic orbital electron populations 1.70063 1.07476 1.27935 1.51049 1.25856 0.95811 1.03029 0.94395 0.85398 0.78928 0.78787 0.77950 1.19098 1.20116 1.20167 1.21487 0.93554 0.91961 1.51485 0.92461 1.19118 0.94181 0.91574 0.96374 1.21044 0.94612 0.81238 0.99369 1.45209 1.10349 1.04382 1.78834 1.16224 0.85246 0.81331 0.77502 1.90858 1.13761 1.87237 1.59980 1.44979 1.10013 1.02980 1.79586 1.20307 0.96214 0.83037 0.91526 0.91216 1.22677 0.99152 0.95628 0.97783 1.21203 0.96975 1.03447 0.89596 1.21027 0.96854 0.95808 0.95911 1.20850 0.98227 1.00228 0.91897 1.21577 0.94588 0.97960 1.01671 1.18521 0.90809 0.97258 0.89651 1.84753 1.38857 1.55085 1.53905 1.21053 0.99337 1.00631 0.94776 1.20906 0.95760 0.97749 0.97109 0.92519 0.97155 0.97342 0.94256 0.93912 0.75785 0.75119 0.87523 0.88014 0.87661 0.88361 0.82366 0.83228 0.73618 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.24 13.29 21.45 0.28 -53.96 16 2 C 0.01 0.44 5.46 84.65 0.46 0.91 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.55 -30.88 9.11 25.60 0.23 -30.65 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.28 5.09 29.85 0.15 1.43 16 10 C 0.16 7.20 5.61 86.38 0.48 7.68 16 11 N -0.73 -26.23 5.56 -478.53 -2.66 -28.89 16 12 C 0.70 24.69 8.56 179.05 1.53 26.23 16 13 O -0.64 -28.26 15.98 -3.98 -0.06 -28.32 16 14 N -0.72 -17.69 5.10 -458.15 -2.34 -20.02 16 15 C 0.19 4.42 3.18 44.92 0.14 4.56 16 16 H 0.07 1.97 7.60 -2.39 -0.02 1.95 16 17 C -0.11 -1.39 6.68 31.60 0.21 -1.18 16 18 C -0.08 -0.77 6.78 30.61 0.21 -0.57 16 19 C -0.10 -1.69 6.14 -19.56 -0.12 -1.81 16 20 C -0.09 -1.51 10.03 22.29 0.22 -1.29 16 21 C -0.14 -2.69 9.99 22.34 0.22 -2.47 16 22 C 0.08 2.09 6.70 22.48 0.15 2.24 16 23 O -0.51 -12.52 13.51 -92.48 -1.25 -13.77 16 24 C -0.14 -4.14 9.98 22.39 0.22 -3.92 16 25 C -0.11 -2.82 5.76 -19.60 -0.11 -2.93 16 26 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.41 12.19 8.49 -92.71 -0.79 11.40 16 32 H 0.41 7.23 8.62 -92.71 -0.80 6.43 16 33 H 0.11 0.93 8.06 -2.39 -0.02 0.91 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 38 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.41 6.42 9.06 -74.06 -0.67 5.75 16 40 H 0.10 3.48 8.02 -2.91 -0.02 3.45 16 Total: -1.00 -76.19 342.38 -1.16 -77.35 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -1.17 Total: 23.45 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.01 Total: -1.76 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.71 Total: -102.87 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.31 Total: -42.09 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -76.19 -1.16 -77.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596555142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.938 kcal (2) G-P(sol) polarization free energy of solvation -76.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds