Wall clock time and date at job start Tue Mar 31 2020 06:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99966 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00531 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99906 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00271 * 180.02562 * 14 12 11 16 16 H 1.08999 * 110.26482 * 34.29503 * 15 14 12 17 17 C 1.54339 * 110.30463 * 156.37040 * 15 14 12 18 18 C 1.54340 * 102.39524 * 92.55153 * 17 15 14 19 19 C 1.51395 * 105.17642 * 26.37045 * 18 17 15 20 20 C 1.38541 * 130.32433 * 162.80042 * 19 18 17 21 21 C 1.38603 * 120.12643 * 180.02562 * 20 19 18 22 22 C 1.38748 * 119.94542 * 359.95499 * 21 20 19 23 23 O 1.35899 * 120.09095 * 179.97438 * 22 21 20 24 24 C 1.38602 * 119.81866 * 0.02562 * 22 21 20 25 25 C 1.38417 * 120.16793 * 0.02562 * 24 22 21 26 26 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 27 27 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 28 28 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 29 29 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 30 30 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 31 31 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 32 32 H 0.96999 * 120.00043 * 359.97438 * 14 12 11 33 33 H 1.09003 * 110.82038 * 210.77557 * 17 15 14 34 34 H 1.08995 * 110.82185 * 334.32359 * 17 15 14 35 35 H 1.08999 * 110.30089 * 145.29104 * 18 17 15 36 36 H 1.09000 * 110.30353 * 267.44442 * 18 17 15 37 37 H 1.07997 * 119.86061 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.99188 * 179.97438 * 21 20 19 39 39 H 0.96706 * 113.99798 * 270.01544 * 23 22 21 40 40 H 1.07996 * 119.91838 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 7 1.5126 -4.9308 -0.0116 12 6 2.1865 -6.0980 -0.0171 13 8 3.4023 -6.0981 -0.0222 14 7 1.5126 -7.2652 -0.0171 15 6 2.2450 -8.5340 -0.0226 16 1 3.1675 -8.4399 0.5503 17 6 1.3664 -9.6621 0.5585 18 6 0.6998 -10.2468 -0.7048 19 6 1.6596 -9.9440 -1.8357 20 6 1.7475 -10.4879 -3.1069 21 6 2.7244 -10.0474 -3.9860 22 6 3.6154 -9.0592 -3.5927 23 8 4.5746 -8.6254 -4.4521 24 6 3.5252 -8.5164 -2.3206 25 6 2.5498 -8.9581 -1.4435 26 1 -0.4849 0.8401 0.0041 27 1 0.6280 -2.5591 0.8866 28 1 0.6206 -2.5548 -0.8933 29 1 2.8685 -3.6025 -0.9044 30 1 2.8753 -3.6063 0.8756 31 1 0.5427 -4.9308 -0.0080 32 1 0.5426 -7.2652 -0.0127 33 1 1.9796 -10.4134 1.0560 34 1 0.6178 -9.2581 1.2399 35 1 0.5680 -11.3236 -0.5988 36 1 -0.2605 -9.7633 -0.8840 37 1 1.0530 -11.2565 -3.4121 38 1 2.7912 -10.4731 -4.9763 39 1 5.4044 -9.1190 -4.3970 40 1 4.2176 -7.7468 -2.0130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596555143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:49 Heat of formation + Delta-G solvation = -84.849447 kcal Electronic energy + Delta-G solvation = -22282.789209 eV Core-core repulsion = 18867.839467 eV Total energy + Delta-G solvation = -3414.949741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70326 -40.56226 -38.86661 -36.71008 -36.08755 -34.84988 -33.95726 -32.08529 -31.21541 -29.26810 -27.67002 -26.40532 -23.78714 -23.14270 -22.32812 -21.89889 -21.65053 -19.49684 -19.02094 -18.45140 -17.54582 -17.03419 -16.64619 -16.51535 -16.41568 -16.03747 -15.74432 -15.21304 -15.15984 -14.84901 -14.61479 -14.28886 -14.26923 -13.55965 -13.22712 -13.00882 -12.93379 -12.61326 -12.52780 -12.40277 -12.25592 -12.07581 -11.96276 -11.68002 -11.54360 -11.50928 -11.21328 -10.61306 -10.34971 -9.90442 -9.75049 -9.36610 -8.24947 -6.35295 0.19672 0.30102 1.41033 1.41884 1.53295 1.78903 2.15755 2.40629 2.63675 3.09732 3.14792 3.42433 3.49636 3.62728 4.03949 4.08013 4.14863 4.33559 4.38366 4.45939 4.49804 4.68198 4.74860 4.83189 4.84577 4.97261 5.07857 5.10870 5.21128 5.29686 5.34547 5.44195 5.50408 5.55273 5.57817 5.62325 5.77792 5.88203 6.04876 6.16295 6.77495 6.80564 7.12863 7.33962 7.60111 8.87054 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.003099 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.676175 B = 9032.500371 C = 9768.274006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.734 5.734 12 C 0.697 3.303 13 O -0.636 6.636 14 N -0.721 5.721 15 C 0.194 3.806 16 H 0.072 0.928 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.096 4.096 20 C -0.094 4.094 21 C -0.141 4.141 22 C 0.083 3.917 23 O -0.514 6.514 24 C -0.139 4.139 25 C -0.114 4.114 26 H 0.266 0.734 27 H 0.011 0.989 28 H 0.007 0.993 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.407 0.593 32 H 0.411 0.589 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.407 0.593 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 -27.207 -2.869 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.012 4.012 10 C 0.037 3.963 11 N -0.388 5.388 12 C 0.397 3.603 13 O -0.518 6.518 14 N -0.377 5.377 15 C 0.089 3.911 16 H 0.090 0.910 17 C -0.152 4.152 18 C -0.112 4.112 19 C -0.097 4.097 20 C -0.112 4.112 21 C -0.159 4.159 22 C 0.039 3.961 23 O -0.327 6.327 24 C -0.158 4.158 25 C -0.116 4.116 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.242 0.758 32 H 0.248 0.752 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.265 0.735 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.023 -26.673 -3.013 26.843 hybrid contribution 0.352 1.215 -0.133 1.272 sum 0.375 -25.458 -3.146 25.654 Atomic orbital electron populations 1.70059 1.07507 1.28020 1.50947 1.25872 0.95826 1.03075 0.94348 0.85436 0.78656 0.78408 0.78502 1.19846 1.20296 1.19065 1.21463 0.93567 0.91962 1.51656 0.92430 1.19113 0.94177 0.91597 0.96336 1.21044 0.94630 0.81257 0.99338 1.45215 1.10352 1.04435 1.78842 1.16230 0.85275 0.81345 0.77482 1.90847 1.13717 1.87244 1.59983 1.45001 1.10029 1.03069 1.79574 1.20335 0.96307 0.82949 0.91528 0.90980 1.22623 0.99153 0.95634 0.97748 1.21161 0.96938 1.03520 0.89630 1.21089 0.96706 0.95899 0.95961 1.21003 0.98153 1.00275 0.91779 1.21713 0.96399 0.96491 1.01308 1.18514 0.93327 0.95909 0.88386 1.84799 1.26552 1.61848 1.59491 1.21056 1.00395 1.00676 0.93709 1.20976 0.95849 0.97625 0.97107 0.92498 0.97070 0.97498 0.94435 0.93758 0.75812 0.75183 0.87765 0.87653 0.87505 0.88601 0.82329 0.83249 0.73451 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 2 C 0.01 0.43 5.46 84.66 0.46 0.90 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.45 9.11 25.60 0.23 -31.22 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.32 5.09 29.85 0.15 1.47 16 10 C 0.16 7.38 5.61 86.38 0.48 7.86 16 11 N -0.73 -27.15 5.56 -478.55 -2.66 -29.81 16 12 C 0.70 25.38 8.56 179.06 1.53 26.91 16 13 O -0.64 -28.67 15.98 -3.98 -0.06 -28.73 16 14 N -0.72 -18.29 5.10 -458.17 -2.34 -20.63 16 15 C 0.19 4.40 3.18 44.91 0.14 4.55 16 16 H 0.07 2.00 7.60 -2.39 -0.02 1.98 16 17 C -0.11 -1.35 6.66 31.50 0.21 -1.14 16 18 C -0.08 -0.78 6.77 30.52 0.21 -0.57 16 19 C -0.10 -1.71 6.14 -19.51 -0.12 -1.83 16 20 C -0.09 -1.52 10.07 22.43 0.23 -1.29 16 21 C -0.14 -2.72 10.01 22.48 0.22 -2.49 16 22 C 0.08 2.12 6.70 22.48 0.15 2.27 16 23 O -0.51 -12.50 13.50 -92.41 -1.25 -13.75 16 24 C -0.14 -4.15 9.98 22.40 0.22 -3.93 16 25 C -0.11 -2.83 5.77 -19.54 -0.11 -2.94 16 26 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 27 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 29 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.04 2.09 8.14 -2.38 -0.02 2.08 16 31 H 0.41 12.68 8.49 -92.71 -0.79 11.89 16 32 H 0.41 7.62 8.62 -92.71 -0.80 6.82 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.92 8.06 -2.39 -0.02 0.90 16 35 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.41 5.53 9.06 -74.05 -0.67 4.86 16 40 H 0.10 3.48 8.02 -2.91 -0.02 3.46 16 Total: -1.00 -77.93 342.40 -1.15 -79.08 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -1.17 Total: 23.50 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.02 Total: -1.45 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -4.71 Total: -105.10 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.31 Total: -42.48 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -77.93 -1.15 -79.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596555143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.770 kcal (2) G-P(sol) polarization free energy of solvation -77.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds