Wall clock time and date at job start Tue Mar 31 2020 06:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99992 * 2 1 4 4 H 1.48494 * 109.47095 * 269.99570 * 3 2 1 5 5 H 1.48502 * 109.47132 * 29.99714 * 3 2 1 6 6 H 1.48500 * 109.47094 * 149.99774 * 3 2 1 7 7 C 1.37885 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99961 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99738 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46919 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47366 * 179.97438 * 10 9 7 12 12 C 1.34770 * 120.00052 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00527 * 4.97269 * 12 11 10 14 14 N 1.34777 * 119.99804 * 184.97513 * 12 11 10 15 15 C 1.47139 * 121.35435 * 174.81119 * 14 12 11 16 16 C 1.52788 * 107.95069 * 115.75968 * 15 14 12 17 17 C 1.50598 * 110.82015 * 47.47708 * 16 15 14 18 18 C 1.39464 * 117.63077 * 159.97692 * 17 16 15 19 19 O 1.35905 * 119.76575 * 359.53346 * 18 17 16 20 20 C 1.38407 * 120.46607 * 179.56435 * 18 17 16 21 21 C 1.38176 * 119.76392 * 359.90038 * 20 18 17 22 22 C 1.37979 * 119.77628 * 0.22884 * 21 20 18 23 23 C 1.37578 * 122.88588 * 339.86755 * 17 16 15 24 24 C 1.46676 * 121.33898 * 354.78721 * 14 12 11 25 25 H 0.97002 * 120.00441 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47520 * 60.00074 * 9 7 2 27 27 H 1.08994 * 109.47400 * 299.99737 * 9 7 2 28 28 H 1.08998 * 109.46803 * 59.99832 * 10 9 7 29 29 H 1.09003 * 109.46977 * 300.00359 * 10 9 7 30 30 H 0.96999 * 119.99675 * 0.02562 * 11 10 9 31 31 H 1.09000 * 109.71743 * 356.16040 * 15 14 12 32 32 H 1.08999 * 109.77291 * 235.39308 * 15 14 12 33 33 H 1.08994 * 109.20008 * 287.14625 * 16 15 14 34 34 H 1.09001 * 109.19614 * 167.80643 * 16 15 14 35 35 H 0.96704 * 113.99671 * 90.01078 * 19 18 17 36 36 H 1.08004 * 120.11905 * 179.97438 * 20 18 17 37 37 H 1.07997 * 120.10907 * 180.24938 * 21 20 18 38 38 H 1.07999 * 119.68567 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.43376 * 104.33201 * 24 14 12 40 40 H 1.08997 * 109.43199 * 344.46725 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 7 5.4866 -2.6365 0.0022 12 6 6.1604 -3.8037 0.0026 13 8 5.5560 -4.8547 -0.0882 14 7 7.5044 -3.8058 0.1038 15 6 8.2614 -5.0621 0.2207 16 6 9.1413 -5.1989 -1.0208 17 6 9.8770 -3.9148 -1.2997 18 6 11.0137 -3.9823 -2.1049 19 8 11.4219 -5.1817 -2.5966 20 6 11.7293 -2.8365 -2.4062 21 6 11.3133 -1.6169 -1.9074 22 6 10.1902 -1.5503 -1.1086 23 6 9.4731 -2.6986 -0.7989 24 6 8.2716 -2.5557 0.1013 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.6586 -3.1509 -0.8875 29 1 3.6578 -3.1498 0.8925 30 1 5.9715 -1.7965 0.0019 31 1 7.5709 -5.9035 0.2779 32 1 8.8855 -5.0348 1.1139 33 1 8.5156 -5.4470 -1.8781 34 1 9.8643 -5.9989 -0.8613 35 1 11.0395 -5.4051 -3.4562 36 1 12.6090 -2.8953 -3.0300 37 1 11.8652 -0.7188 -2.1423 38 1 9.8662 -0.5963 -0.7198 39 1 8.6027 -2.3313 1.1153 40 1 7.6411 -1.7440 -0.2615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599024786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:39 Heat of formation + Delta-G solvation = -45.862480 kcal Electronic energy + Delta-G solvation = -22585.354316 eV Core-core repulsion = 19172.095177 eV Total energy + Delta-G solvation = -3413.259139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87517 -39.56517 -37.37087 -36.08013 -34.97532 -33.12133 -32.35783 -31.41842 -30.08142 -28.88593 -26.13143 -24.88355 -23.71703 -22.42305 -21.33038 -20.78915 -19.31944 -18.43345 -17.89825 -16.95251 -16.54043 -16.18131 -15.84720 -15.53364 -15.19897 -14.51116 -14.21210 -14.12754 -14.03102 -13.90265 -13.43633 -13.29004 -12.75109 -12.63594 -12.57741 -12.44032 -11.96617 -11.66074 -11.51755 -11.34773 -11.21256 -10.64804 -10.40009 -10.27139 -9.98123 -9.77827 -9.32971 -9.02350 -8.88535 -8.76065 -8.62396 -8.35378 -6.11124 -4.11127 0.89792 0.98478 2.74013 3.23637 3.24553 3.31923 3.33240 3.41892 3.88315 4.14834 4.34747 4.37280 4.42532 4.68378 4.72702 4.94996 5.03053 5.10000 5.17188 5.21736 5.30652 5.41880 5.48714 5.61749 5.68005 5.87679 6.01980 6.07876 6.10850 6.22262 6.24301 6.41317 6.46567 6.57802 6.79381 7.00100 7.22963 7.25109 7.32157 7.67086 8.18254 8.44945 8.83755 8.93826 9.48912 11.01974 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.003456 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.517262 B = 8099.995652 C = 9027.572831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.147 3.853 11 N -0.742 5.742 12 C 0.708 3.292 13 O -0.589 6.589 14 N -0.636 5.636 15 C 0.132 3.868 16 C -0.095 4.095 17 C -0.088 4.088 18 C 0.102 3.898 19 O -0.497 6.497 20 C -0.145 4.145 21 C -0.106 4.106 22 C -0.121 4.121 23 C -0.079 4.079 24 C 0.152 3.848 25 H 0.265 0.735 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.390 0.610 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.390 0.610 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.279 -4.501 -3.281 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.397 5.397 12 C 0.409 3.591 13 O -0.467 6.467 14 N -0.375 5.375 15 C 0.008 3.992 16 C -0.133 4.133 17 C -0.089 4.089 18 C 0.057 3.943 19 O -0.307 6.307 20 C -0.164 4.164 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.080 4.080 24 C 0.029 3.971 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.225 0.775 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.246 0.754 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.101 0.899 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 25.904 -5.198 -2.801 26.568 hybrid contribution 0.479 1.505 -0.590 1.686 sum 26.383 -3.693 -3.391 26.855 Atomic orbital electron populations 1.69901 1.06289 1.27043 1.50452 1.25000 0.94759 0.99129 0.94402 0.86752 0.80258 0.83578 0.78479 1.20241 1.21267 1.19106 1.20915 0.88604 0.94924 1.51583 0.90559 1.19794 0.97976 0.91399 0.96747 1.21402 0.74665 0.99908 1.01572 1.45675 1.08989 1.06222 1.78801 1.15835 0.80510 0.84881 0.77827 1.90897 1.67010 1.30822 1.57960 1.47195 1.04476 1.06863 1.78943 1.21387 0.94111 0.87120 0.96545 1.20754 0.98331 0.94596 0.99603 1.19826 0.94781 0.95231 0.99079 1.18462 0.93369 0.84930 0.97525 1.84788 1.71207 1.34528 1.40218 1.21348 1.01009 0.92047 1.01953 1.20931 0.96638 0.97374 0.97499 1.21090 0.95769 0.97945 0.99153 1.19732 0.97123 0.92635 0.98544 1.20391 0.90717 0.87443 0.98582 0.92548 0.96043 0.96512 0.92063 0.92088 0.77508 0.88118 0.91225 0.90177 0.89113 0.75447 0.85461 0.85403 0.85374 0.89949 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 3.05 5.62 -4.04 -0.02 3.03 16 11 N -0.74 -12.65 5.46 -65.22 -0.36 -13.01 16 12 C 0.71 12.27 8.32 -86.92 -0.72 11.55 16 13 O -0.59 -12.44 15.85 5.29 0.08 -12.36 16 14 N -0.64 -8.40 2.93 -180.20 -0.53 -8.93 16 15 C 0.13 1.50 6.42 -3.80 -0.02 1.47 16 16 C -0.09 -0.96 5.51 -28.04 -0.15 -1.11 16 17 C -0.09 -0.92 5.77 -104.46 -0.60 -1.53 16 18 C 0.10 0.98 6.66 -39.06 -0.26 0.72 16 19 O -0.50 -4.16 12.46 -19.44 -0.24 -4.40 16 20 C -0.15 -1.24 9.98 -39.54 -0.39 -1.64 16 21 C -0.11 -0.85 10.05 -39.70 -0.40 -1.25 16 22 C -0.12 -1.04 9.62 -39.44 -0.38 -1.42 16 23 C -0.08 -0.80 5.82 -104.57 -0.61 -1.41 16 24 C 0.15 1.56 6.07 -5.04 -0.03 1.53 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 27 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.39 5.57 6.13 -40.82 -0.25 5.32 16 31 H 0.10 1.27 7.09 -51.93 -0.37 0.91 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.81 7.65 -51.93 -0.40 0.41 16 35 H 0.39 1.66 9.06 45.56 0.41 2.07 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.84 8.05 -52.49 -0.42 0.42 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.88 5.97 -51.93 -0.31 0.57 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -34.55 329.86 -8.76 -43.32 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.65 Total: 4.44 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -4.15 Total: -3.72 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.11 Total: -48.48 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.16 Total: -16.76 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.55 -8.76 -43.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599024786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.546 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds