Wall clock time and date at job start Tue Mar 31 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99992 * 2 1 4 4 H 1.48494 * 109.47095 * 269.99570 * 3 2 1 5 5 H 1.48502 * 109.47132 * 29.99714 * 3 2 1 6 6 H 1.48500 * 109.47094 * 149.99774 * 3 2 1 7 7 C 1.37885 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99961 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99738 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46919 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47366 * 179.97438 * 10 9 7 12 12 C 1.34770 * 120.00052 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00527 * 4.97269 * 12 11 10 14 14 N 1.34777 * 119.99804 * 184.97513 * 12 11 10 15 15 C 1.47139 * 121.35435 * 174.81119 * 14 12 11 16 16 C 1.52788 * 107.95069 * 115.75968 * 15 14 12 17 17 C 1.50598 * 110.82015 * 47.47708 * 16 15 14 18 18 C 1.39464 * 117.63077 * 159.97692 * 17 16 15 19 19 O 1.35905 * 119.76575 * 359.53346 * 18 17 16 20 20 C 1.38407 * 120.46607 * 179.56435 * 18 17 16 21 21 C 1.38176 * 119.76392 * 359.90038 * 20 18 17 22 22 C 1.37979 * 119.77628 * 0.22884 * 21 20 18 23 23 C 1.37578 * 122.88588 * 339.86755 * 17 16 15 24 24 C 1.46676 * 121.33898 * 354.78721 * 14 12 11 25 25 H 0.97002 * 120.00441 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47520 * 60.00074 * 9 7 2 27 27 H 1.08994 * 109.47400 * 299.99737 * 9 7 2 28 28 H 1.08998 * 109.46803 * 59.99832 * 10 9 7 29 29 H 1.09003 * 109.46977 * 300.00359 * 10 9 7 30 30 H 0.96999 * 119.99675 * 0.02562 * 11 10 9 31 31 H 1.09000 * 109.71743 * 356.16040 * 15 14 12 32 32 H 1.08999 * 109.77291 * 235.39308 * 15 14 12 33 33 H 1.08994 * 109.20008 * 287.14625 * 16 15 14 34 34 H 1.09001 * 109.19614 * 167.80643 * 16 15 14 35 35 H 0.96704 * 113.99671 * 90.01078 * 19 18 17 36 36 H 1.08004 * 120.11905 * 179.97438 * 20 18 17 37 37 H 1.07997 * 120.10907 * 180.24938 * 21 20 18 38 38 H 1.07999 * 119.68567 * 180.02562 * 22 21 20 39 39 H 1.08999 * 109.43376 * 104.33201 * 24 14 12 40 40 H 1.08997 * 109.43199 * 344.46725 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 7 5.4866 -2.6365 0.0022 12 6 6.1604 -3.8037 0.0026 13 8 5.5560 -4.8547 -0.0882 14 7 7.5044 -3.8058 0.1038 15 6 8.2614 -5.0621 0.2207 16 6 9.1413 -5.1989 -1.0208 17 6 9.8770 -3.9148 -1.2997 18 6 11.0137 -3.9823 -2.1049 19 8 11.4219 -5.1817 -2.5966 20 6 11.7293 -2.8365 -2.4062 21 6 11.3133 -1.6169 -1.9074 22 6 10.1902 -1.5503 -1.1086 23 6 9.4731 -2.6986 -0.7989 24 6 8.2716 -2.5557 0.1013 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.6586 -3.1509 -0.8875 29 1 3.6578 -3.1498 0.8925 30 1 5.9715 -1.7965 0.0019 31 1 7.5709 -5.9035 0.2779 32 1 8.8855 -5.0348 1.1139 33 1 8.5156 -5.4470 -1.8781 34 1 9.8643 -5.9989 -0.8613 35 1 11.0395 -5.4051 -3.4562 36 1 12.6090 -2.8953 -3.0300 37 1 11.8652 -0.7188 -2.1423 38 1 9.8662 -0.5963 -0.7198 39 1 8.6027 -2.3313 1.1153 40 1 7.6411 -1.7440 -0.2615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599024786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:38 Heat of formation + Delta-G solvation = -70.780082 kcal Electronic energy + Delta-G solvation = -22586.434825 eV Core-core repulsion = 19172.095177 eV Total energy + Delta-G solvation = -3414.339648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78731 -40.61449 -38.17284 -37.05124 -36.51557 -34.88742 -33.57612 -32.18483 -31.75065 -29.69686 -27.30920 -26.31640 -24.71519 -23.12690 -22.68405 -22.23887 -20.49042 -19.18109 -19.02562 -18.84738 -17.52830 -17.11767 -16.70109 -16.53123 -16.31085 -16.15495 -15.47743 -15.35637 -15.23586 -14.83372 -14.64673 -14.45668 -14.32479 -13.56879 -13.51694 -13.27031 -13.14181 -13.02268 -12.67213 -12.39525 -12.19801 -12.15590 -12.11379 -11.74324 -11.52060 -11.35060 -11.26278 -10.77639 -10.25607 -9.69863 -9.57993 -9.40812 -8.28600 -6.36083 0.26999 0.32396 1.40378 1.43408 1.54482 1.56197 2.06638 2.38500 2.61383 2.93910 3.06465 3.28354 3.63527 3.70121 3.93766 4.06250 4.19221 4.26623 4.35005 4.38965 4.44854 4.52510 4.61779 4.64997 4.75851 4.80336 4.86212 4.89368 5.12262 5.14367 5.36985 5.41648 5.43434 5.45442 5.49431 5.55116 5.66535 5.85017 5.95587 6.24180 6.70997 6.82050 6.93472 7.28331 7.50382 8.88301 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.003456 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.517262 B = 8099.995652 C = 9027.572831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.234 1.234 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.010 4.010 10 C 0.164 3.836 11 N -0.731 5.731 12 C 0.705 3.295 13 O -0.635 6.635 14 N -0.628 5.628 15 C 0.128 3.872 16 C -0.084 4.084 17 C -0.111 4.111 18 C 0.093 3.907 19 O -0.507 6.507 20 C -0.152 4.152 21 C -0.105 4.105 22 C -0.124 4.124 23 C -0.091 4.091 24 C 0.148 3.852 25 H 0.268 0.732 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.407 0.593 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.406 0.594 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.104 0.896 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.816 -2.092 -3.346 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.157 1.157 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.048 4.048 10 C 0.039 3.961 11 N -0.388 5.388 12 C 0.406 3.594 13 O -0.517 6.517 14 N -0.365 5.365 15 C 0.006 3.994 16 C -0.122 4.122 17 C -0.112 4.112 18 C 0.049 3.951 19 O -0.319 6.319 20 C -0.170 4.170 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.092 4.092 24 C 0.026 3.974 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.245 0.755 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.264 0.736 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.122 0.878 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 29.519 -2.789 -2.875 29.789 hybrid contribution -0.601 0.645 -0.603 1.068 sum 28.918 -2.144 -3.478 29.205 Atomic orbital electron populations 1.70077 1.08646 1.28451 1.51992 1.26098 0.95690 1.03933 0.93641 0.85531 0.79767 0.77203 0.79334 1.19019 1.21294 1.15685 1.21245 0.91549 0.93393 1.51569 0.95346 1.19635 0.94379 0.92716 0.98095 1.20905 0.76945 0.98409 0.99793 1.45278 1.07383 1.07205 1.78961 1.15959 0.81783 0.84038 0.77603 1.90867 1.68484 1.32377 1.59924 1.47195 1.03121 1.08832 1.77366 1.21531 0.93850 0.85823 0.98232 1.20616 0.97991 0.95360 0.98264 1.19925 0.95605 0.95306 1.00339 1.18594 0.93298 0.85595 0.97618 1.84739 1.71433 1.34322 1.41448 1.21615 1.01353 0.91991 1.02044 1.21280 0.96396 0.98071 0.96529 1.21352 0.95665 0.98254 0.98952 1.19788 0.97289 0.93138 0.98997 1.20659 0.90682 0.85945 1.00133 0.92327 0.94281 0.94685 0.94209 0.93866 0.75466 0.90019 0.89111 0.91545 0.88115 0.73594 0.83989 0.82899 0.83190 0.87797 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 2 C 0.00 0.19 5.47 84.66 0.46 0.65 16 3 Si 0.96 41.77 27.47 68.60 1.88 43.65 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.23 -8.92 6.54 99.48 0.65 -8.27 16 7 C -0.54 -30.80 9.66 25.60 0.25 -30.55 16 8 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.46 4.16 29.85 0.12 -0.34 16 10 C 0.16 6.83 5.62 86.38 0.49 7.32 16 11 N -0.73 -24.04 5.46 -478.54 -2.61 -26.65 16 12 C 0.70 24.17 8.32 179.06 1.49 25.66 16 13 O -0.63 -27.58 15.85 -3.98 -0.06 -27.64 16 14 N -0.63 -15.79 2.93 -842.31 -2.47 -18.26 16 15 C 0.13 2.83 6.42 86.19 0.55 3.38 16 16 C -0.08 -1.64 5.51 29.75 0.16 -1.48 16 17 C -0.11 -2.12 5.77 -19.76 -0.11 -2.24 16 18 C 0.09 1.62 6.66 22.61 0.15 1.77 16 19 O -0.51 -7.71 12.46 -92.48 -1.15 -8.87 16 20 C -0.15 -2.18 9.98 22.30 0.22 -1.96 16 21 C -0.10 -1.30 10.05 22.19 0.22 -1.08 16 22 C -0.12 -1.69 9.62 22.36 0.22 -1.47 16 23 C -0.09 -1.60 5.82 -19.83 -0.12 -1.71 16 24 C 0.15 2.62 6.07 85.64 0.52 3.14 16 25 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 26 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 27 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.41 10.45 6.13 -92.71 -0.57 9.88 16 31 H 0.08 2.12 7.09 -2.39 -0.02 2.11 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.71 7.65 -2.39 -0.02 1.69 16 35 H 0.41 2.93 9.06 -74.05 -0.67 2.26 16 36 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.15 1.31 8.05 -2.91 -0.02 1.29 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.58 5.97 -2.39 -0.01 1.56 16 Total: -1.00 -77.29 329.86 0.29 -77.00 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -0.22 Total: 18.72 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 4.63 Total: 1.10 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -4.78 Total: -103.96 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.22 Total: -36.51 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.88 Total: 43.65 kcal Total: -77.29 0.29 -77.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599024786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.217 kcal (2) G-P(sol) polarization free energy of solvation -77.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds