Wall clock time and date at job start Tue Mar 31 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00049 * 2 1 4 4 H 1.48496 * 109.46999 * 240.00173 * 3 2 1 5 5 H 1.48493 * 109.46778 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47017 * 119.99965 * 3 2 1 7 7 C 1.37884 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99542 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46821 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47189 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47082 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99709 * 179.97438 * 12 11 10 14 14 O 1.21596 * 120.00155 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99968 * 179.97438 * 13 12 11 16 16 C 1.40172 * 120.00111 * 185.63282 * 15 13 12 17 17 C 1.38520 * 119.94350 * 24.83011 * 16 15 13 18 18 C 1.38195 * 120.27021 * 180.02562 * 17 16 15 19 19 C 1.38374 * 119.82912 * 0.18455 * 18 17 16 20 20 C 1.37854 * 120.10417 * 359.97438 * 19 18 17 21 21 C 1.38712 * 120.82455 * 359.64347 * 20 19 18 22 22 O 1.36210 * 111.25657 * 181.03169 * 21 20 19 23 23 C 1.43787 * 109.17493 * 340.66505 * 22 21 20 24 24 C 1.51653 * 132.11498 * 179.13264 * 20 19 18 25 25 H 0.96997 * 120.00426 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47443 * 59.99262 * 9 7 2 27 27 H 1.09000 * 109.46838 * 299.99172 * 9 7 2 28 28 H 1.09002 * 109.47280 * 59.99918 * 10 9 7 29 29 H 1.08991 * 109.47257 * 299.99696 * 10 9 7 30 30 H 1.08994 * 109.47015 * 59.99698 * 11 10 9 31 31 H 1.09000 * 109.46899 * 299.99832 * 11 10 9 32 32 H 0.97000 * 120.00006 * 359.97438 * 12 11 10 33 33 H 0.96997 * 120.00196 * 5.63225 * 15 13 12 34 34 H 1.07999 * 119.86500 * 0.02562 * 17 16 15 35 35 H 1.07997 * 120.08982 * 180.20681 * 18 17 16 36 36 H 1.07995 * 119.94844 * 180.02562 * 19 18 17 37 37 H 1.08995 * 110.75667 * 269.54443 * 23 22 21 38 38 H 1.08999 * 110.91552 * 146.24805 * 23 22 21 39 39 H 1.09000 * 110.93639 * 313.76456 * 24 20 19 40 40 H 1.09004 * 110.93823 * 77.39984 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9831 -7.3712 0.0030 14 8 0.7876 -7.5934 0.0040 15 7 2.8589 -8.3956 0.0030 16 6 2.3961 -9.7135 -0.1150 17 6 1.1800 -9.9669 -0.7278 18 6 0.7169 -11.2635 -0.8472 19 6 1.4700 -12.3120 -0.3490 20 6 2.6794 -12.0643 0.2646 21 6 3.1629 -10.7698 0.3860 22 8 4.3783 -10.7522 1.0006 23 6 4.5626 -11.9847 1.7179 24 6 3.6992 -12.9824 0.9101 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8895 27 1 0.6242 -2.5567 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8894 30 1 0.8534 -5.0451 -0.8885 31 1 0.8540 -5.0446 0.8914 32 1 3.3860 -5.9233 0.0014 33 1 3.8096 -8.2210 0.0846 34 1 0.5912 -9.1479 -1.1138 35 1 -0.2301 -11.4580 -1.3285 36 1 1.1102 -13.3260 -0.4417 37 1 4.1952 -11.8954 2.7401 38 1 5.6101 -12.2863 1.7105 39 1 3.2136 -13.7008 1.5706 40 1 4.2969 -13.4929 0.1549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599844048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:35 Heat of formation + Delta-G solvation = -42.000190 kcal Electronic energy + Delta-G solvation = -21807.393798 eV Core-core repulsion = 18394.302140 eV Total energy + Delta-G solvation = -3413.091658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.46570 -40.09327 -37.56941 -35.65016 -34.80462 -33.37602 -32.26519 -31.16287 -29.68698 -28.91144 -26.59424 -23.94349 -23.25903 -22.50024 -22.00077 -20.80695 -20.17759 -18.52921 -17.56845 -17.36705 -16.60884 -16.35867 -15.96013 -15.53643 -15.24417 -14.72089 -14.42267 -14.22630 -14.09523 -13.76288 -13.35528 -13.19003 -12.82079 -12.28430 -12.15072 -11.96704 -11.82896 -11.80567 -11.58585 -11.19673 -10.89406 -10.73923 -10.62351 -10.55206 -9.98655 -9.86532 -9.44939 -9.14543 -8.87556 -8.53984 -8.37168 -7.89279 -6.01867 -4.05097 1.14396 1.15520 2.62132 2.95688 3.13682 3.32101 3.36896 3.38790 3.66911 4.11263 4.19924 4.29416 4.44582 4.63622 4.74573 5.00694 5.06145 5.13192 5.31413 5.33804 5.39836 5.44890 5.60420 5.67707 5.77880 5.95019 6.07340 6.15290 6.33038 6.37424 6.48114 6.52520 6.59468 6.75928 6.96213 6.99918 7.04232 7.62973 7.75678 7.96654 7.97309 8.37381 8.56674 9.01304 9.59001 11.09375 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038526 B = 0.002378 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.608949 B =11772.734969 C =12373.514951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.133 3.867 12 N -0.734 5.734 13 C 0.700 3.300 14 O -0.575 6.575 15 N -0.685 5.685 16 C 0.166 3.834 17 C -0.102 4.102 18 C -0.122 4.122 19 C -0.097 4.097 20 C -0.156 4.156 21 C 0.063 3.937 22 O -0.307 6.307 23 C 0.054 3.946 24 C -0.108 4.108 25 H 0.262 0.738 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.409 0.591 34 H 0.159 0.841 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -27.626 0.712 28.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.011 3.989 12 N -0.388 5.388 13 C 0.400 3.600 14 O -0.453 6.453 15 N -0.332 5.332 16 C 0.070 3.930 17 C -0.123 4.123 18 C -0.141 4.141 19 C -0.116 4.116 20 C -0.157 4.157 21 C 0.016 3.984 22 O -0.222 6.222 23 C -0.021 4.021 24 C -0.145 4.145 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.244 0.756 34 H 0.177 0.823 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.361 -27.399 0.719 28.380 hybrid contribution 1.395 0.961 0.166 1.702 sum 8.756 -26.439 0.885 27.865 Atomic orbital electron populations 1.69949 1.06054 1.26826 1.50423 1.25030 0.94863 0.99297 0.95264 0.86638 0.79557 0.83086 0.78583 1.20243 1.21270 1.20253 1.21161 0.92951 0.90940 1.51115 0.92700 1.19022 0.93829 0.90753 0.97722 1.21903 0.99840 0.93207 1.00940 1.21592 0.91240 0.83956 1.02150 1.45433 1.10833 1.04177 1.78357 1.15978 0.85118 0.80759 0.78106 1.90881 1.13880 1.83565 1.56978 1.42634 1.10273 1.03599 1.76701 1.16863 0.94362 0.80765 1.00994 1.21354 0.94640 0.98523 0.97738 1.20988 1.00311 0.91680 1.01104 1.20269 0.93056 0.99467 0.98855 1.20518 0.97394 0.93070 1.04718 1.19109 0.87382 0.93396 0.98518 1.86801 1.31019 1.40211 1.64133 1.23782 1.01446 0.81368 0.95554 1.21774 0.95562 0.97791 0.99364 0.92849 0.96209 0.96213 0.92696 0.92665 0.91631 0.91687 0.77016 0.75611 0.82347 0.85077 0.85884 0.90642 0.87673 0.89093 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.13 2.34 5.67 -4.04 -0.02 2.32 16 12 N -0.73 -10.64 5.56 -65.23 -0.36 -11.00 16 13 C 0.70 10.91 8.36 -86.92 -0.73 10.18 16 14 O -0.58 -10.89 13.50 5.28 0.07 -10.81 16 15 N -0.69 -8.80 5.38 -14.02 -0.08 -8.88 16 16 C 0.17 2.21 6.46 -83.35 -0.54 1.67 16 17 C -0.10 -1.36 8.69 -39.49 -0.34 -1.70 16 18 C -0.12 -1.30 10.06 -39.55 -0.40 -1.70 16 19 C -0.10 -0.92 10.03 -39.67 -0.40 -1.32 16 20 C -0.16 -1.56 6.27 -104.12 -0.65 -2.21 16 21 C 0.06 0.75 6.92 -38.82 -0.27 0.48 16 22 O -0.31 -3.31 11.11 -20.41 -0.23 -3.54 16 23 C 0.05 0.37 8.01 38.06 0.30 0.67 16 24 C -0.11 -0.71 7.12 -26.51 -0.19 -0.90 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.40 4.58 8.49 -40.82 -0.35 4.24 16 33 H 0.41 4.20 8.80 -40.82 -0.36 3.84 16 34 H 0.16 2.38 5.76 -52.49 -0.30 2.08 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -33.42 338.75 -9.32 -42.73 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.62 Total: 3.87 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.92 Total: -7.87 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.30 Total: -45.95 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.16 Total: -14.35 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.42 -9.32 -42.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599844048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.735 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds