Wall clock time and date at job start Tue Mar 31 2020 06:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00049 * 2 1 4 4 H 1.48496 * 109.46999 * 240.00173 * 3 2 1 5 5 H 1.48493 * 109.46778 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47017 * 119.99965 * 3 2 1 7 7 C 1.37884 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99542 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46821 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47189 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47082 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99709 * 179.97438 * 12 11 10 14 14 O 1.21596 * 120.00155 * 359.97438 * 13 12 11 15 15 N 1.34778 * 119.99968 * 179.97438 * 13 12 11 16 16 C 1.40172 * 120.00111 * 185.63282 * 15 13 12 17 17 C 1.38520 * 119.94350 * 24.83011 * 16 15 13 18 18 C 1.38195 * 120.27021 * 180.02562 * 17 16 15 19 19 C 1.38374 * 119.82912 * 0.18455 * 18 17 16 20 20 C 1.37854 * 120.10417 * 359.97438 * 19 18 17 21 21 C 1.38712 * 120.82455 * 359.64347 * 20 19 18 22 22 O 1.36210 * 111.25657 * 181.03169 * 21 20 19 23 23 C 1.43787 * 109.17493 * 340.66505 * 22 21 20 24 24 C 1.51653 * 132.11498 * 179.13264 * 20 19 18 25 25 H 0.96997 * 120.00426 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47443 * 59.99262 * 9 7 2 27 27 H 1.09000 * 109.46838 * 299.99172 * 9 7 2 28 28 H 1.09002 * 109.47280 * 59.99918 * 10 9 7 29 29 H 1.08991 * 109.47257 * 299.99696 * 10 9 7 30 30 H 1.08994 * 109.47015 * 59.99698 * 11 10 9 31 31 H 1.09000 * 109.46899 * 299.99832 * 11 10 9 32 32 H 0.97000 * 120.00006 * 359.97438 * 12 11 10 33 33 H 0.96997 * 120.00196 * 5.63225 * 15 13 12 34 34 H 1.07999 * 119.86500 * 0.02562 * 17 16 15 35 35 H 1.07997 * 120.08982 * 180.20681 * 18 17 16 36 36 H 1.07995 * 119.94844 * 180.02562 * 19 18 17 37 37 H 1.08995 * 110.75667 * 269.54443 * 23 22 21 38 38 H 1.08999 * 110.91552 * 146.24805 * 23 22 21 39 39 H 1.09000 * 110.93639 * 313.76456 * 24 20 19 40 40 H 1.09004 * 110.93823 * 77.39984 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9831 -7.3712 0.0030 14 8 0.7876 -7.5934 0.0040 15 7 2.8589 -8.3956 0.0030 16 6 2.3961 -9.7135 -0.1150 17 6 1.1800 -9.9669 -0.7278 18 6 0.7169 -11.2635 -0.8472 19 6 1.4700 -12.3120 -0.3490 20 6 2.6794 -12.0643 0.2646 21 6 3.1629 -10.7698 0.3860 22 8 4.3783 -10.7522 1.0006 23 6 4.5626 -11.9847 1.7179 24 6 3.6992 -12.9824 0.9101 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8895 27 1 0.6242 -2.5567 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8894 30 1 0.8534 -5.0451 -0.8885 31 1 0.8540 -5.0446 0.8914 32 1 3.3860 -5.9233 0.0014 33 1 3.8096 -8.2210 0.0846 34 1 0.5912 -9.1479 -1.1138 35 1 -0.2301 -11.4580 -1.3285 36 1 1.1102 -13.3260 -0.4417 37 1 4.1952 -11.8954 2.7401 38 1 5.6101 -12.2863 1.7105 39 1 3.2136 -13.7008 1.5706 40 1 4.2969 -13.4929 0.1549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599844048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:35 Heat of formation + Delta-G solvation = -64.539025 kcal Electronic energy + Delta-G solvation = -21808.371156 eV Core-core repulsion = 18394.302140 eV Total energy + Delta-G solvation = -3414.069015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.29708 -41.19508 -38.47008 -37.05887 -35.94575 -35.23810 -33.31842 -32.63364 -30.52206 -29.82910 -28.34812 -25.27189 -24.33885 -23.35762 -23.04308 -22.34962 -21.44592 -19.63229 -18.70825 -18.27488 -18.19609 -17.37806 -16.87407 -16.78855 -16.52183 -16.18468 -15.68544 -15.63833 -15.40703 -14.57548 -14.29269 -14.06686 -13.94589 -13.74990 -13.73063 -13.41188 -12.81082 -12.72703 -12.67533 -12.55422 -12.41165 -12.32923 -11.92830 -11.67671 -11.61396 -11.47353 -11.24523 -11.03403 -10.54479 -10.20182 -9.36771 -8.79968 -8.19102 -6.30606 0.27314 0.31870 1.41509 1.44849 1.48030 1.52989 1.95445 2.25530 2.42116 2.79233 3.10552 3.14530 3.51240 3.70368 4.05964 4.11173 4.20271 4.21802 4.23811 4.40306 4.45644 4.54793 4.62670 4.79399 4.91137 4.94608 4.94987 4.95829 5.08126 5.16717 5.28813 5.38401 5.49603 5.51894 5.57320 5.68699 5.71118 5.84321 5.87154 6.20943 6.22752 6.85740 6.89640 7.37150 7.38902 8.92809 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038526 B = 0.002378 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.608949 B =11772.734969 C =12373.514951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.101 4.101 11 C 0.149 3.851 12 N -0.723 5.723 13 C 0.699 3.301 14 O -0.613 6.613 15 N -0.672 5.672 16 C 0.135 3.865 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.091 4.091 20 C -0.159 4.159 21 C 0.054 3.946 22 O -0.324 6.324 23 C 0.044 3.956 24 C -0.101 4.101 25 H 0.263 0.737 26 H -0.007 1.007 27 H -0.007 1.007 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.413 0.587 33 H 0.420 0.580 34 H 0.133 0.867 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.820 -29.508 1.091 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.025 3.975 12 N -0.378 5.378 13 C 0.399 3.601 14 O -0.493 6.493 15 N -0.319 5.319 16 C 0.040 3.960 17 C -0.147 4.147 18 C -0.144 4.144 19 C -0.110 4.110 20 C -0.160 4.160 21 C 0.007 3.993 22 O -0.239 6.239 23 C -0.030 4.030 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.011 0.989 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.250 0.750 33 H 0.258 0.742 34 H 0.150 0.850 35 H 0.167 0.833 36 H 0.174 0.826 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.132 0.868 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.803 -29.320 1.101 30.935 hybrid contribution 0.655 1.408 0.064 1.554 sum 10.458 -27.912 1.165 29.830 Atomic orbital electron populations 1.70099 1.07925 1.27871 1.51594 1.26027 0.95758 1.03554 0.94794 0.85469 0.78188 0.77938 0.79252 1.19024 1.21169 1.19056 1.21649 0.93740 0.92013 1.50586 0.91553 1.18934 0.94427 0.92831 0.95186 1.21599 0.98496 0.91612 1.02193 1.21164 0.91226 0.84228 1.00920 1.45069 1.11220 1.03219 1.78273 1.16063 0.84906 0.81248 0.77865 1.90864 1.15698 1.84166 1.58594 1.42408 1.10409 1.03136 1.75992 1.17090 0.95214 0.81024 1.02667 1.21265 0.95047 0.99091 0.99262 1.21251 1.01213 0.90992 1.00991 1.20639 0.92502 1.00555 0.97304 1.21054 0.97902 0.93227 1.03838 1.19237 0.87815 0.93676 0.98580 1.86781 1.30356 1.42329 1.64413 1.24132 1.03344 0.80037 0.95475 1.21885 0.94649 0.97446 0.99830 0.92797 0.98810 0.98875 0.91366 0.91273 0.92909 0.93145 0.75023 0.74235 0.84972 0.83278 0.82576 0.90131 0.84975 0.86811 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 11 C 0.15 5.34 5.67 86.38 0.49 5.83 16 12 N -0.72 -20.96 5.56 -478.54 -2.66 -23.62 16 13 C 0.70 22.38 8.36 179.06 1.50 23.88 16 14 O -0.61 -24.40 13.50 -4.02 -0.05 -24.45 16 15 N -0.67 -17.52 5.38 -316.52 -1.70 -19.22 16 16 C 0.14 3.66 6.46 38.25 0.25 3.90 16 17 C -0.13 -3.48 8.69 22.33 0.19 -3.29 16 18 C -0.13 -2.61 10.06 22.29 0.22 -2.38 16 19 C -0.09 -1.52 10.03 22.21 0.22 -1.30 16 20 C -0.16 -2.81 6.27 -19.54 -0.12 -2.93 16 21 C 0.05 1.23 6.92 22.76 0.16 1.39 16 22 O -0.32 -6.47 11.11 -95.95 -1.07 -7.53 16 23 C 0.04 0.48 8.01 72.56 0.58 1.06 16 24 C -0.10 -0.97 7.12 30.73 0.22 -0.75 16 25 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 26 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.41 9.11 8.49 -92.71 -0.79 8.32 16 33 H 0.42 8.53 8.80 -92.71 -0.82 7.71 16 34 H 0.13 4.32 5.76 -2.91 -0.02 4.30 16 35 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -74.54 338.75 1.01 -73.53 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.53 Total: 19.15 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 4.72 Total: -6.77 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -4.08 Total: -99.91 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.12 Total: -31.98 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -74.54 1.01 -73.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599844048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.990 kcal (2) G-P(sol) polarization free energy of solvation -74.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds