Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 C 1.50700 * 109.47165 * 120.00715 * 2 1 3 5 5 C 1.38220 * 120.01689 * 59.72111 * 4 2 1 6 6 C 1.38219 * 120.02434 * 179.72405 * 5 4 2 7 7 C 1.38267 * 120.05375 * 0.55004 * 6 5 4 8 8 C 1.38174 * 120.02438 * 359.72901 * 7 6 5 9 9 C 1.38447 * 120.01013 * 239.99738 * 4 2 1 10 10 F 1.35099 * 120.02580 * 0.02562 * 9 4 2 11 11 N 1.46505 * 109.46967 * 240.00164 * 2 1 3 12 12 C 1.35311 * 125.86860 * 325.00155 * 11 2 1 13 13 C 1.35349 * 106.17681 * 179.97438 * 12 11 2 14 14 C 1.50699 * 126.75570 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46700 * 95.00128 * 14 13 12 16 16 C 1.36935 * 119.99926 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99877 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00369 * 179.73019 * 16 15 14 19 19 N 1.31617 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47050 * 59.99408 * 20 18 16 22 22 H 1.48496 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46855 * 299.99389 * 20 18 16 24 24 N 1.33779 * 106.49417 * 0.26311 * 13 12 11 25 25 N 1.28632 * 108.88497 * 359.56114 * 24 13 12 26 26 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46403 * 299.99633 * 1 2 3 28 28 H 1.08997 * 109.46845 * 59.99750 * 1 2 3 29 29 H 1.08001 * 119.98551 * 0.02562 * 5 4 2 30 30 H 1.08004 * 119.97419 * 180.27881 * 6 5 4 31 31 H 1.07996 * 119.98730 * 179.74368 * 7 6 5 32 32 H 1.08004 * 120.01171 * 180.02562 * 8 7 6 33 33 H 1.08004 * 126.91108 * 0.02562 * 12 11 2 34 34 H 1.08998 * 109.46743 * 335.00604 * 14 13 12 35 35 H 1.08994 * 109.47542 * 215.00463 * 14 13 12 36 36 H 0.97005 * 120.00261 * 0.02562 * 15 14 13 37 37 H 0.97004 * 120.00382 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 6 1.6939 -2.0322 1.4522 6 6 2.1593 -2.6857 2.5777 7 6 2.9544 -2.0152 3.4887 8 6 3.2893 -0.6923 3.2720 9 6 2.8284 -0.0381 2.1419 10 9 3.1548 1.2555 1.9292 11 7 2.0184 -0.6906 -1.1962 12 6 1.4358 -1.7587 -1.7884 13 6 2.2124 -2.0702 -2.8522 14 6 1.9879 -3.1899 -3.8356 15 7 1.2699 -2.6762 -5.0047 16 6 0.9519 -3.5177 -6.0371 17 1 1.2309 -4.5600 -5.9897 18 6 0.2667 -3.0323 -7.1424 19 7 -0.0779 -1.7632 -7.1979 20 14 -0.1677 -4.1804 -8.5505 21 1 -1.0319 -5.2775 -8.0459 22 1 -0.8934 -3.4225 -9.6012 23 1 1.0766 -4.7539 -9.1234 24 7 3.2222 -1.1927 -2.8553 25 7 3.0750 -0.3852 -1.8648 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.0697 -2.5558 0.7433 30 1 1.8980 -3.7198 2.7480 31 1 3.3140 -2.5257 4.3699 32 1 3.9107 -0.1688 3.9836 33 1 0.5322 -2.2610 -1.4757 34 1 1.3981 -3.9754 -3.3633 35 1 2.9494 -3.5962 -4.1493 36 1 1.0197 -1.7399 -5.0475 37 1 -0.5571 -1.4240 -7.9701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600976504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = 95.476036 kcal Electronic energy + Delta-G solvation = -22178.980567 eV Core-core repulsion = 18680.682772 eV Total energy + Delta-G solvation = -3498.297795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.31264 -42.97584 -39.62172 -36.17105 -34.70608 -32.11810 -31.42397 -31.00165 -29.89742 -29.56629 -26.03490 -24.89829 -23.28911 -22.76757 -22.66788 -20.89419 -20.40630 -18.16781 -17.52851 -16.98457 -16.93339 -16.32110 -15.89651 -15.56029 -14.75185 -14.64336 -14.44971 -14.23534 -13.68238 -13.63121 -13.36321 -13.06726 -12.95335 -12.60515 -12.55674 -12.43748 -11.97668 -11.58200 -11.50900 -11.19170 -10.86599 -10.77112 -10.41106 -10.10380 -9.86896 -9.69127 -9.47984 -9.14445 -8.85236 -8.78626 -6.88859 -5.71090 -3.00705 0.58356 0.74834 1.88364 2.45250 2.97086 3.17319 3.47988 3.52254 3.53617 3.77396 3.93856 4.13890 4.41774 4.47814 4.64001 4.65307 4.78098 4.80406 4.87065 5.17320 5.27289 5.30659 5.36815 5.50446 5.57209 5.61607 5.67253 5.68329 5.79896 5.93734 5.95244 6.21020 6.39613 6.45162 6.69385 6.79563 6.84602 7.72985 8.46176 8.90909 9.57810 10.13972 10.50086 11.51637 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.003233 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.530719 B = 8657.604314 C = 8907.284377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.187 3.813 3 H 0.121 0.879 4 C -0.142 4.142 5 C -0.070 4.070 6 C -0.128 4.128 7 C -0.082 4.082 8 C -0.155 4.155 9 C 0.122 3.878 10 F -0.132 7.132 11 N -0.292 5.292 12 C -0.045 4.045 13 C -0.004 4.004 14 C 0.233 3.767 15 N -0.725 5.725 16 C -0.240 4.240 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.285 1.285 24 N -0.254 5.254 25 N -0.092 5.092 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.185 0.815 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.386 0.614 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 1.338 26.298 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 H 0.139 0.861 4 C -0.145 4.145 5 C -0.088 4.088 6 C -0.146 4.146 7 C -0.100 4.100 8 C -0.174 4.174 9 C 0.102 3.898 10 F -0.111 7.111 11 N -0.086 5.086 12 C -0.195 4.195 13 C -0.142 4.142 14 C 0.104 3.896 15 N -0.370 5.370 16 C -0.371 4.371 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 N -0.121 5.121 25 N -0.071 5.071 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.202 0.798 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.219 0.781 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.637 2.228 26.061 26.289 hybrid contribution -1.219 -0.629 -0.644 1.516 sum 1.418 1.600 25.417 25.507 Atomic orbital electron populations 1.22218 0.90662 1.04398 1.04570 1.20249 0.96143 0.96707 0.78374 0.86080 1.19887 1.01833 0.96125 0.96620 1.20999 0.97964 0.92614 0.97248 1.21247 0.98388 1.00677 0.94323 1.21121 0.96298 0.93365 0.99221 1.21172 1.02809 0.96061 0.97370 1.17482 0.97405 0.79194 0.95743 1.91520 1.90833 1.34028 1.94709 1.47373 1.18484 1.21912 1.20810 1.23255 1.03271 0.94490 0.98498 1.22455 0.93231 1.00641 0.97862 1.18934 0.96212 0.88996 0.85448 1.42301 1.67472 1.10440 1.16821 1.19190 1.29819 0.92095 0.96032 0.90954 1.24754 1.01354 0.96169 0.98612 1.69673 1.44842 1.12787 1.30774 0.86236 0.78047 0.79618 0.82076 1.21256 1.21749 1.21186 1.75106 1.21762 1.03179 1.12092 1.78295 1.04218 1.21445 1.03129 0.90697 0.89448 0.90121 0.84718 0.84772 0.84666 0.84309 0.79753 0.94567 0.94381 0.78085 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.64 37.16 0.32 -1.01 16 2 C 0.19 2.06 3.46 -69.08 -0.24 1.82 16 3 H 0.12 1.35 7.13 -51.93 -0.37 0.98 16 4 C -0.14 -1.43 4.99 -104.55 -0.52 -1.95 16 5 C -0.07 -0.61 8.83 -39.59 -0.35 -0.96 16 6 C -0.13 -0.91 10.04 -39.58 -0.40 -1.31 16 7 C -0.08 -0.54 10.04 -39.59 -0.40 -0.94 16 8 C -0.16 -1.22 10.03 -39.52 -0.40 -1.62 16 9 C 0.12 1.22 7.25 -39.42 -0.29 0.93 16 10 F -0.13 -1.46 16.19 2.25 0.04 -1.43 16 11 N -0.29 -4.38 3.18 -55.89 -0.18 -4.56 16 12 C -0.04 -0.69 9.54 -17.05 -0.16 -0.86 16 13 C 0.00 -0.08 6.61 -82.77 -0.55 -0.63 16 14 C 0.23 4.99 6.82 -5.19 -0.04 4.96 16 15 N -0.73 -19.25 5.59 -61.09 -0.34 -19.59 16 16 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 17 H 0.07 1.96 7.83 -52.48 -0.41 1.54 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.96 13.06 55.49 0.72 -28.23 16 20 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 N -0.25 -5.42 12.41 33.29 0.41 -5.00 16 25 N -0.09 -1.75 13.17 60.35 0.79 -0.96 16 26 H 0.07 0.55 6.41 -51.93 -0.33 0.21 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.14 1.05 6.55 -52.49 -0.34 0.70 16 30 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 31 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.19 2.18 7.09 -52.48 -0.37 1.81 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.39 11.04 7.66 -40.82 -0.31 10.73 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -34.96 323.93 -6.19 -41.15 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.24 Total: 5.15 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.26 Total: -9.03 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 1.41 Total: -58.35 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.96 -6.19 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600976504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.624 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds