Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 C 1.50700 * 109.47165 * 120.00715 * 2 1 3 5 5 C 1.38220 * 120.01689 * 59.72111 * 4 2 1 6 6 C 1.38219 * 120.02434 * 179.72405 * 5 4 2 7 7 C 1.38267 * 120.05375 * 0.55004 * 6 5 4 8 8 C 1.38174 * 120.02438 * 359.72901 * 7 6 5 9 9 C 1.38447 * 120.01013 * 239.99738 * 4 2 1 10 10 F 1.35099 * 120.02580 * 0.02562 * 9 4 2 11 11 N 1.46505 * 109.46967 * 240.00164 * 2 1 3 12 12 C 1.35311 * 125.86860 * 325.00155 * 11 2 1 13 13 C 1.35349 * 106.17681 * 179.97438 * 12 11 2 14 14 C 1.50699 * 126.75570 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46700 * 95.00128 * 14 13 12 16 16 C 1.36935 * 119.99926 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99877 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00369 * 179.73019 * 16 15 14 19 19 N 1.31617 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47050 * 59.99408 * 20 18 16 22 22 H 1.48496 * 109.47289 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46855 * 299.99389 * 20 18 16 24 24 N 1.33779 * 106.49417 * 0.26311 * 13 12 11 25 25 N 1.28632 * 108.88497 * 359.56114 * 24 13 12 26 26 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46403 * 299.99633 * 1 2 3 28 28 H 1.08997 * 109.46845 * 59.99750 * 1 2 3 29 29 H 1.08001 * 119.98551 * 0.02562 * 5 4 2 30 30 H 1.08004 * 119.97419 * 180.27881 * 6 5 4 31 31 H 1.07996 * 119.98730 * 179.74368 * 7 6 5 32 32 H 1.08004 * 120.01171 * 180.02562 * 8 7 6 33 33 H 1.08004 * 126.91108 * 0.02562 * 12 11 2 34 34 H 1.08998 * 109.46743 * 335.00604 * 14 13 12 35 35 H 1.08994 * 109.47542 * 215.00463 * 14 13 12 36 36 H 0.97005 * 120.00261 * 0.02562 * 15 14 13 37 37 H 0.97004 * 120.00382 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 6 1.6939 -2.0322 1.4522 6 6 2.1593 -2.6857 2.5777 7 6 2.9544 -2.0152 3.4887 8 6 3.2893 -0.6923 3.2720 9 6 2.8284 -0.0381 2.1419 10 9 3.1548 1.2555 1.9292 11 7 2.0184 -0.6906 -1.1962 12 6 1.4358 -1.7587 -1.7884 13 6 2.2124 -2.0702 -2.8522 14 6 1.9879 -3.1899 -3.8356 15 7 1.2699 -2.6762 -5.0047 16 6 0.9519 -3.5177 -6.0371 17 1 1.2309 -4.5600 -5.9897 18 6 0.2667 -3.0323 -7.1424 19 7 -0.0779 -1.7632 -7.1979 20 14 -0.1677 -4.1804 -8.5505 21 1 -1.0319 -5.2775 -8.0459 22 1 -0.8934 -3.4225 -9.6012 23 1 1.0766 -4.7539 -9.1234 24 7 3.2222 -1.1927 -2.8553 25 7 3.0750 -0.3852 -1.8648 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.0697 -2.5558 0.7433 30 1 1.8980 -3.7198 2.7480 31 1 3.3140 -2.5257 4.3699 32 1 3.9107 -0.1688 3.9836 33 1 0.5322 -2.2610 -1.4757 34 1 1.3981 -3.9754 -3.3633 35 1 2.9494 -3.5962 -4.1493 36 1 1.0197 -1.7399 -5.0475 37 1 -0.5571 -1.4240 -7.9701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600976504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = 72.274924 kcal Electronic energy + Delta-G solvation = -22179.986643 eV Core-core repulsion = 18680.682772 eV Total energy + Delta-G solvation = -3499.303871 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.07284 -44.31276 -40.28222 -37.25519 -36.47173 -33.85107 -32.60507 -31.72690 -31.51393 -30.31500 -27.74348 -25.90273 -24.73134 -24.02815 -23.51140 -22.25593 -21.51612 -19.35440 -18.86599 -18.26380 -17.78691 -17.26090 -16.74037 -16.60504 -16.39062 -15.93047 -15.50082 -15.27328 -15.07932 -14.88755 -14.43567 -14.28891 -14.00940 -13.82305 -13.43573 -13.17126 -13.09689 -12.93119 -12.71349 -12.56185 -12.37070 -12.17358 -12.11005 -11.86530 -11.80019 -11.09223 -10.93129 -10.22412 -10.10921 -9.78038 -9.00928 -7.91704 -5.22391 -0.07236 0.14579 0.61397 1.39786 1.46967 1.52343 1.55145 1.61193 2.55693 2.60989 3.08454 3.17326 3.30883 3.40805 3.55009 3.77539 3.80435 3.94844 4.08050 4.16642 4.24088 4.28796 4.30692 4.49972 4.57966 4.66381 4.79104 4.85890 4.95934 5.02738 5.05797 5.14167 5.20029 5.26975 5.37751 5.52104 5.64086 5.82243 6.27536 7.34374 7.51068 8.05670 8.31901 9.32136 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.031434 B = 0.003233 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.530719 B = 8657.604314 C = 8907.284377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.180 3.820 3 H 0.112 0.888 4 C -0.156 4.156 5 C -0.080 4.080 6 C -0.126 4.126 7 C -0.076 4.076 8 C -0.159 4.159 9 C 0.095 3.905 10 F -0.147 7.147 11 N -0.276 5.276 12 C -0.015 4.015 13 C -0.035 4.035 14 C 0.237 3.763 15 N -0.739 5.739 16 C -0.245 4.245 17 H 0.085 0.915 18 C -0.077 4.077 19 N -0.974 5.974 20 Si 0.980 3.020 21 H -0.270 1.270 22 H -0.298 1.298 23 H -0.279 1.279 24 N -0.298 5.298 25 N -0.119 5.119 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.227 0.773 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.370 0.630 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -0.729 28.471 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.079 3.921 3 H 0.130 0.870 4 C -0.158 4.158 5 C -0.099 4.099 6 C -0.144 4.144 7 C -0.094 4.094 8 C -0.177 4.177 9 C 0.075 3.925 10 F -0.126 7.126 11 N -0.070 5.070 12 C -0.167 4.167 13 C -0.174 4.174 14 C 0.109 3.891 15 N -0.382 5.382 16 C -0.376 4.376 17 H 0.103 0.897 18 C -0.269 4.269 19 N -0.624 5.624 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.225 1.225 23 H -0.206 1.206 24 N -0.165 5.165 25 N -0.097 5.097 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.088 0.912 29 H 0.162 0.838 30 H 0.178 0.822 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.243 0.757 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.201 0.799 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.732 0.149 28.288 28.341 hybrid contribution -0.887 0.011 -1.118 1.427 sum 0.845 0.161 27.170 27.184 Atomic orbital electron populations 1.22263 0.88286 1.05650 1.05167 1.20619 0.97914 0.96105 0.77430 0.87023 1.19830 1.02932 0.96923 0.96158 1.21216 0.98359 0.92040 0.98236 1.21624 0.97478 1.01816 0.93480 1.21540 0.95178 0.92722 0.99940 1.21475 1.02600 0.96795 0.96865 1.17829 0.98558 0.79013 0.97068 1.91479 1.91115 1.35047 1.94928 1.47740 1.17039 1.21275 1.20897 1.23688 1.03053 0.93475 0.96476 1.22330 0.94573 1.01144 0.99381 1.18972 0.95385 0.90236 0.84502 1.42512 1.67933 1.09588 1.18166 1.19679 1.28615 0.92877 0.96468 0.89672 1.25649 1.02074 0.97717 1.01489 1.69856 1.46315 1.14865 1.31403 0.85122 0.77868 0.77743 0.78465 1.19575 1.22471 1.20551 1.75030 1.23468 1.04367 1.13602 1.78201 1.06119 1.21780 1.03579 0.89077 0.87107 0.91236 0.83750 0.82177 0.81525 0.82723 0.75700 0.91614 0.95450 0.79871 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.64 71.98 0.62 -1.66 16 2 C 0.18 3.81 3.46 44.25 0.15 3.96 16 3 H 0.11 2.56 7.13 -2.39 -0.02 2.54 16 4 C -0.16 -2.93 4.99 -19.82 -0.10 -3.03 16 5 C -0.08 -1.18 8.83 22.26 0.20 -0.98 16 6 C -0.13 -1.36 10.04 22.27 0.22 -1.13 16 7 C -0.08 -0.75 10.04 22.26 0.22 -0.52 16 8 C -0.16 -2.18 10.03 22.31 0.22 -1.96 16 9 C 0.10 1.83 7.25 22.38 0.16 1.99 16 10 F -0.15 -3.31 16.19 44.97 0.73 -2.58 16 11 N -0.28 -8.14 3.18 -330.72 -1.05 -9.19 16 12 C -0.02 -0.45 9.54 83.49 0.80 0.35 16 13 C -0.04 -1.38 6.61 41.59 0.28 -1.11 16 14 C 0.24 10.03 6.82 85.63 0.58 10.62 16 15 N -0.74 -39.44 5.59 -347.19 -1.94 -41.38 16 16 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 17 H 0.09 4.50 7.83 -2.91 -0.02 4.47 16 18 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 19 N -0.97 -61.51 13.06 21.65 0.28 -61.22 16 20 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 N -0.30 -13.04 12.41 -48.60 -0.60 -13.64 16 25 N -0.12 -4.60 13.17 37.02 0.49 -4.11 16 26 H 0.09 1.04 6.41 -2.39 -0.02 1.02 16 27 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.14 1.74 6.55 -2.91 -0.02 1.73 16 30 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 32 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.23 4.51 7.09 -2.91 -0.02 4.49 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.37 21.69 7.66 -92.70 -0.71 20.98 16 37 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -77.75 323.93 4.99 -72.76 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.40 Total: 21.40 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.67 Total: -10.59 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -2.83 Total: -129.54 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.73 Total: -2.58 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.75 4.99 -72.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600976504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.034 kcal (2) G-P(sol) polarization free energy of solvation -77.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds