Wall clock time and date at job start Tue Mar 31 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99791 * 2 1 4 4 H 1.48498 * 109.47203 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46971 * 299.99532 * 3 2 1 6 6 H 1.48501 * 109.47328 * 59.99637 * 3 2 1 7 7 C 1.37876 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00456 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47134 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46982 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.46922 * 305.00154 * 11 10 9 13 13 N 1.46905 * 109.47144 * 65.00358 * 11 10 9 14 14 C 1.50705 * 109.46901 * 184.99952 * 11 10 9 15 15 O 1.21298 * 119.99685 * 259.99903 * 14 11 10 16 16 N 1.34770 * 119.99766 * 80.00429 * 14 11 10 17 17 C 1.40134 * 119.99649 * 175.51263 * 16 14 11 18 18 C 1.38535 * 119.94142 * 34.71007 * 17 16 14 19 19 C 1.38193 * 120.26839 * 179.85309 * 18 17 16 20 20 C 1.38377 * 119.82339 * 0.36824 * 19 18 17 21 21 C 1.37835 * 120.11674 * 359.69187 * 20 19 18 22 22 C 1.38721 * 120.82593 * 0.30437 * 21 20 19 23 23 O 1.36208 * 111.27189 * 179.30373 * 22 21 20 24 24 C 1.43772 * 109.23486 * 18.83907 * 23 22 21 25 25 C 1.51651 * 132.12328 * 180.54839 * 21 20 19 26 26 H 0.97000 * 120.00384 * 0.02562 * 1 2 3 27 27 H 1.09009 * 109.46519 * 59.99786 * 9 7 2 28 28 H 1.08998 * 109.47087 * 300.00766 * 9 7 2 29 29 H 1.08999 * 109.47662 * 60.00413 * 10 9 7 30 30 H 1.09007 * 109.47178 * 300.00194 * 10 9 7 31 31 H 1.00903 * 110.99673 * 296.04361 * 13 11 10 32 32 H 1.00894 * 110.99944 * 59.99668 * 13 11 10 33 33 H 0.96996 * 120.00381 * 355.50989 * 16 14 11 34 34 H 1.08000 * 119.86310 * 0.09431 * 18 17 16 35 35 H 1.07996 * 120.08737 * 180.10456 * 19 18 17 36 36 H 1.08008 * 119.94031 * 179.71430 * 20 19 18 37 37 H 1.08998 * 110.75461 * 90.68519 * 24 23 22 38 38 H 1.09004 * 110.75129 * 213.85518 * 24 23 22 39 39 H 1.09003 * 110.94204 * 46.11826 * 25 21 20 40 40 H 1.09002 * 110.96958 * 282.44602 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 1 0.7880 -5.0065 0.8448 13 7 0.7291 -5.1193 -1.2522 14 6 2.4551 -6.1297 0.1281 15 8 2.7872 -6.7539 -0.8575 16 7 2.9574 -6.4580 1.3348 17 6 3.7896 -7.5779 1.4662 18 6 4.6604 -7.9160 0.4432 19 6 5.4861 -9.0172 0.5668 20 6 5.4368 -9.7890 1.7143 21 6 4.5712 -9.4572 2.7343 22 6 3.7353 -8.3553 2.6271 23 8 2.9548 -8.2175 3.7348 24 6 3.5350 -8.9627 4.8187 25 6 4.3034 -10.0885 4.0869 26 1 -0.4851 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8720 -3.6036 0.8927 30 1 2.8721 -3.6050 -0.8873 31 1 0.0243 -4.4013 -1.3291 32 1 1.3492 -5.1040 -2.0479 33 1 2.7431 -5.9192 2.1124 34 1 4.6968 -7.3144 -0.4530 35 1 6.1651 -9.2772 -0.2318 36 1 6.0781 -10.6527 1.8110 37 1 4.2191 -8.3388 5.3938 38 1 2.7584 -9.3763 5.4622 39 1 5.2366 -10.3204 4.6002 40 1 3.6847 -10.9802 3.9856 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602536007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:20 Heat of formation + Delta-G solvation = -49.644329 kcal Electronic energy + Delta-G solvation = -22482.671661 eV Core-core repulsion = 19069.248528 eV Total energy + Delta-G solvation = -3413.423133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38579 -39.88192 -37.45885 -35.59723 -34.81050 -32.88046 -32.17273 -29.94279 -29.69074 -29.10465 -26.50867 -24.26370 -23.54160 -22.40901 -21.90977 -20.58665 -19.70194 -17.97375 -17.45804 -17.19204 -16.40483 -16.15657 -16.03209 -15.13856 -14.79138 -14.72252 -14.44274 -14.18532 -13.65524 -13.44514 -13.28404 -13.11285 -12.89211 -12.78033 -12.20401 -12.07445 -11.90400 -11.75093 -11.52930 -11.11426 -11.04346 -10.94488 -10.67462 -10.30307 -10.01769 -9.90542 -9.31805 -9.22093 -8.50976 -8.45684 -8.24933 -7.93475 -6.09823 -4.13032 1.15714 1.20597 2.77892 3.02957 3.14535 3.25585 3.33656 3.37556 3.62482 4.17717 4.35649 4.38437 4.68949 4.79847 4.84253 5.08276 5.13443 5.13978 5.24138 5.26485 5.36438 5.44745 5.50381 5.54813 5.68485 5.72889 6.05741 6.11596 6.24310 6.37701 6.45429 6.47943 6.57345 6.83932 7.08326 7.35707 7.49423 7.55981 7.61992 7.86588 7.87998 8.28299 8.31379 8.93105 9.52084 11.01092 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022253 B = 0.003203 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.977916 B = 8740.136860 C = 9097.156916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.139 4.139 11 C 0.077 3.923 12 H 0.100 0.900 13 N -0.830 5.830 14 C 0.527 3.473 15 O -0.520 6.520 16 N -0.672 5.672 17 C 0.142 3.858 18 C -0.090 4.090 19 C -0.128 4.128 20 C -0.091 4.091 21 C -0.161 4.161 22 C 0.074 3.926 23 O -0.301 6.301 24 C 0.051 3.949 25 C -0.107 4.107 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.356 0.644 32 H 0.346 0.654 33 H 0.414 0.586 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.118 -19.662 8.154 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.038 4.038 12 H 0.118 0.882 13 N -0.362 5.362 14 C 0.315 3.685 15 O -0.395 6.395 16 N -0.318 5.318 17 C 0.047 3.953 18 C -0.110 4.110 19 C -0.147 4.147 20 C -0.110 4.110 21 C -0.162 4.162 22 C 0.027 3.973 23 O -0.215 6.215 24 C -0.024 4.024 25 C -0.144 4.144 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.251 0.749 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.687 -20.526 7.733 23.592 hybrid contribution 0.782 2.065 0.365 2.238 sum 9.469 -18.462 8.098 22.273 Atomic orbital electron populations 1.69957 1.06019 1.26704 1.50474 1.25015 0.94874 0.99336 0.95113 0.86524 0.80106 0.83660 0.77660 1.19746 1.20940 1.20937 1.21213 0.93071 0.90853 1.51063 0.92632 1.19112 0.93699 0.91058 0.97462 1.22413 0.99948 0.93843 1.01625 1.21472 0.94562 0.91814 0.95973 0.88192 1.58730 1.18434 1.56028 1.03018 1.21135 0.80727 0.84601 0.82014 1.90617 1.59324 1.52693 1.36836 1.43558 1.48475 1.27679 1.12114 1.17115 0.94918 0.89470 0.93788 1.21160 0.92973 0.98365 0.98547 1.20962 1.00221 0.95798 0.97735 1.20267 0.98193 1.00018 0.92502 1.20552 1.00799 0.96828 0.98020 1.19315 0.93972 0.94253 0.89779 1.86873 1.45613 1.70689 1.18368 1.23829 0.97819 0.91781 0.89009 1.21775 1.01550 0.98884 0.92221 0.92913 0.96308 0.96237 0.92462 0.92493 0.82802 0.84079 0.74949 0.83263 0.85121 0.85857 0.90564 0.87629 0.89108 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 11 C 0.08 1.32 3.21 -68.86 -0.22 1.10 16 12 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 13 N -0.83 -14.27 8.94 -5.65 -0.05 -14.32 16 14 C 0.53 8.94 6.92 -10.99 -0.08 8.86 16 15 O -0.52 -9.92 13.66 5.54 0.08 -9.85 16 16 N -0.67 -9.97 5.35 -9.66 -0.05 -10.02 16 17 C 0.14 2.08 6.33 -83.36 -0.53 1.55 16 18 C -0.09 -1.27 8.67 -39.49 -0.34 -1.61 16 19 C -0.13 -1.45 10.06 -39.55 -0.40 -1.85 16 20 C -0.09 -0.93 10.03 -39.68 -0.40 -1.33 16 21 C -0.16 -1.77 6.27 -104.12 -0.65 -2.42 16 22 C 0.07 0.98 6.95 -38.81 -0.27 0.71 16 23 O -0.30 -3.74 11.11 -20.40 -0.23 -3.96 16 24 C 0.05 0.40 8.01 38.05 0.30 0.71 16 25 C -0.11 -0.81 7.12 -26.52 -0.19 -1.00 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.47 6.87 -51.92 -0.36 0.11 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.36 6.12 7.55 -39.29 -0.30 5.82 16 32 H 0.35 5.94 8.58 -39.29 -0.34 5.60 16 33 H 0.41 5.42 8.82 -40.82 -0.36 5.06 16 34 H 0.15 2.29 6.18 -52.49 -0.32 1.96 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -32.15 336.16 -8.36 -40.50 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.44 Total: 12.35 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -3.44 Total: -10.76 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.63 Total: -49.56 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.15 Total: -13.81 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.15 -8.36 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602536007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.142 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds