Wall clock time and date at job start Tue Mar 31 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47291 * 2 1 4 4 C 1.50700 * 109.47043 * 239.99790 * 2 1 3 5 5 C 1.38241 * 119.97727 * 299.72704 * 4 2 1 6 6 C 1.38195 * 120.02895 * 179.77066 * 5 4 2 7 7 C 1.38459 * 119.97329 * 0.50477 * 6 5 4 8 8 F 1.35099 * 120.03028 * 179.77006 * 7 6 5 9 9 C 1.38466 * 119.94538 * 359.75019 * 7 6 5 10 10 C 1.38197 * 119.97636 * 359.97438 * 9 7 6 11 11 N 1.46494 * 109.46644 * 120.00218 * 2 1 3 12 12 C 1.35317 * 125.87155 * 35.32391 * 11 2 1 13 13 C 1.35352 * 106.17693 * 180.11507 * 12 11 2 14 14 C 1.50700 * 126.75361 * 179.84844 * 13 12 11 15 15 N 1.46498 * 109.46769 * 94.71485 * 14 13 12 16 16 C 1.36943 * 119.99752 * 179.72432 * 15 14 13 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 N 1.33772 * 106.49634 * 359.59642 * 13 12 11 25 25 N 1.28636 * 108.88627 * 0.25926 * 24 13 12 26 26 H 1.08999 * 109.47623 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47529 * 300.00543 * 1 2 3 28 28 H 1.09008 * 109.46573 * 60.00147 * 1 2 3 29 29 H 1.08008 * 119.98587 * 0.02562 * 5 4 2 30 30 H 1.07997 * 120.01645 * 180.26050 * 6 5 4 31 31 H 1.08002 * 120.00980 * 179.97438 * 9 7 6 32 32 H 1.07998 * 119.98579 * 180.02562 * 10 9 7 33 33 H 1.08002 * 126.91295 * 359.96910 * 12 11 2 34 34 H 1.09004 * 109.47210 * 334.71843 * 14 13 12 35 35 H 1.08994 * 109.47121 * 214.71813 * 14 13 12 36 36 H 0.97001 * 120.00384 * 0.02562 * 15 14 13 37 37 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.7027 -2.0356 -1.4458 6 6 2.1589 -2.6868 -2.5762 7 6 2.9550 -2.0145 -3.4880 8 9 3.4053 -2.6513 -4.5910 9 6 3.2888 -0.6887 -3.2685 10 6 2.8268 -0.0380 -2.1403 11 7 2.0182 -0.6906 1.1961 12 6 1.4390 -1.7626 1.7847 13 6 2.2131 -2.0714 2.8512 14 6 1.9886 -3.1912 3.8344 15 7 2.7597 -4.3661 3.4207 16 6 2.7165 -5.5118 4.1695 17 1 2.1104 -5.5507 5.0626 18 6 3.4517 -6.6232 3.7807 19 7 4.1907 -6.5756 2.6926 20 14 3.3921 -8.1863 4.8017 21 1 1.9945 -8.6844 4.8634 22 1 4.2588 -9.2183 4.1780 23 1 3.8763 -7.8987 6.1758 24 7 3.2198 -1.1905 2.8576 25 7 3.0754 -0.3860 1.8643 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.0850 -2.5611 -0.7324 30 1 1.8978 -3.7208 -2.7464 31 1 3.9101 -0.1634 -3.9788 32 1 3.0867 0.9962 -1.9692 33 1 0.5386 -2.2684 1.4686 34 1 0.9285 -3.4436 3.8618 35 1 2.3125 -2.8746 4.8258 36 1 3.3044 -4.3311 2.6188 37 1 4.7041 -7.3524 2.4207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603176960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:15 Heat of formation + Delta-G solvation = 93.955757 kcal Electronic energy + Delta-G solvation = -22149.705747 eV Core-core repulsion = 18651.342027 eV Total energy + Delta-G solvation = -3498.363720 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.12210 -42.99415 -39.62441 -35.96341 -34.67940 -32.05306 -31.53782 -31.17887 -29.89532 -29.27297 -26.00283 -24.72616 -23.44187 -22.74072 -22.54565 -20.89334 -20.41196 -18.01543 -17.53092 -17.05638 -16.80317 -16.15822 -15.79978 -15.29169 -14.79715 -14.64872 -14.35168 -13.96681 -13.79360 -13.63791 -13.23382 -13.22481 -13.05407 -12.71135 -12.55007 -12.20785 -11.83346 -11.77369 -11.27519 -11.20281 -10.87204 -10.77533 -10.40805 -10.10889 -9.87320 -9.69221 -9.40831 -8.96893 -8.85630 -8.79649 -6.89341 -5.71508 -3.01223 0.68962 0.93144 1.87505 2.46145 2.95751 3.29282 3.47684 3.52107 3.53344 3.95169 4.03815 4.19790 4.42913 4.56254 4.64381 4.64888 4.77211 4.92131 5.02720 5.15183 5.24009 5.31603 5.46697 5.57074 5.57763 5.63200 5.66850 5.81574 5.89001 5.91020 6.07774 6.20360 6.44255 6.54414 6.68745 6.79139 6.84224 7.72668 8.45702 8.89320 9.57377 10.13428 10.49402 11.51157 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.004253 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.671907 B = 6582.629977 C = 7963.163013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.191 3.809 3 H 0.119 0.881 4 C -0.124 4.124 5 C -0.064 4.064 6 C -0.148 4.148 7 C 0.109 3.891 8 F -0.137 7.137 9 C -0.156 4.156 10 C -0.067 4.067 11 N -0.293 5.293 12 C -0.045 4.045 13 C -0.004 4.004 14 C 0.232 3.768 15 N -0.725 5.725 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.285 1.285 24 N -0.255 5.255 25 N -0.094 5.094 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.185 0.815 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.385 0.615 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 15.775 -13.297 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.089 3.911 3 H 0.137 0.863 4 C -0.125 4.125 5 C -0.083 4.083 6 C -0.167 4.167 7 C 0.090 3.910 8 F -0.116 7.116 9 C -0.175 4.175 10 C -0.086 4.086 11 N -0.087 5.087 12 C -0.195 4.195 13 C -0.142 4.142 14 C 0.103 3.897 15 N -0.370 5.370 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 N -0.122 5.122 25 N -0.072 5.072 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.202 0.798 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.219 0.781 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.601 16.606 -13.094 22.830 hybrid contribution -0.535 -1.785 -0.245 1.879 sum -9.136 14.821 -13.339 21.933 Atomic orbital electron populations 1.22221 0.91175 1.04344 1.04208 1.20337 0.95741 0.96366 0.78681 0.86284 1.19861 1.01096 0.95211 0.96381 1.20934 0.97851 0.93436 0.96037 1.21207 0.99445 1.01429 0.94614 1.17808 0.97210 0.91307 0.84681 1.91518 1.87328 1.81967 1.50784 1.21122 1.03073 0.93415 0.99860 1.20859 0.94779 1.00249 0.92680 1.47433 1.18287 1.22000 1.20997 1.23253 1.04138 0.94120 0.98035 1.22455 0.93144 0.99694 0.98911 1.18942 0.95512 0.82781 0.92430 1.42305 1.55281 1.08619 1.30823 1.19189 1.23077 0.89658 1.05234 0.90958 1.24748 0.99732 0.98345 0.97989 1.69677 1.33245 1.30108 1.25031 0.86245 0.77236 0.83067 0.79487 1.21243 1.21747 1.21185 1.75096 1.20784 1.03593 1.12712 1.78256 1.03928 1.21969 1.03056 0.90773 0.90638 0.89368 0.84715 0.84067 0.84340 0.84519 0.79806 0.94543 0.94386 0.78111 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.65 37.16 0.32 -0.69 16 2 C 0.19 1.75 3.47 -69.08 -0.24 1.51 16 3 H 0.12 0.91 7.87 -51.93 -0.41 0.50 16 4 C -0.12 -1.23 4.98 -104.62 -0.52 -1.75 16 5 C -0.06 -0.70 8.82 -39.60 -0.35 -1.05 16 6 C -0.15 -1.67 10.03 -39.52 -0.40 -2.07 16 7 C 0.11 1.24 7.30 -39.42 -0.29 0.95 16 8 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 9 C -0.16 -1.48 10.03 -39.51 -0.40 -1.88 16 10 C -0.07 -0.59 9.67 -39.59 -0.38 -0.98 16 11 N -0.29 -4.07 3.18 -55.89 -0.18 -4.25 16 12 C -0.05 -0.67 9.49 -17.04 -0.16 -0.83 16 13 C 0.00 -0.08 6.61 -82.78 -0.55 -0.63 16 14 C 0.23 4.92 6.82 -5.19 -0.04 4.89 16 15 N -0.73 -19.12 5.59 -61.09 -0.34 -19.46 16 16 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 20 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 N -0.25 -5.27 12.41 33.29 0.41 -4.85 16 25 N -0.09 -1.67 13.17 60.35 0.79 -0.88 16 26 H 0.07 0.46 6.44 -51.93 -0.33 0.12 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.14 1.39 6.51 -52.48 -0.34 1.05 16 30 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.14 0.85 7.94 -52.49 -0.42 0.44 16 33 H 0.18 2.11 7.07 -52.49 -0.37 1.73 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.39 10.99 7.66 -40.82 -0.31 10.68 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -34.86 325.23 -6.18 -41.05 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.27 Total: 5.69 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.24 Total: -9.95 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 1.41 Total: -57.65 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.86 -6.18 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603176960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.001 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds