Wall clock time and date at job start Tue Mar 31 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47291 * 2 1 4 4 C 1.50700 * 109.47043 * 239.99790 * 2 1 3 5 5 C 1.38241 * 119.97727 * 299.72704 * 4 2 1 6 6 C 1.38195 * 120.02895 * 179.77066 * 5 4 2 7 7 C 1.38459 * 119.97329 * 0.50477 * 6 5 4 8 8 F 1.35099 * 120.03028 * 179.77006 * 7 6 5 9 9 C 1.38466 * 119.94538 * 359.75019 * 7 6 5 10 10 C 1.38197 * 119.97636 * 359.97438 * 9 7 6 11 11 N 1.46494 * 109.46644 * 120.00218 * 2 1 3 12 12 C 1.35317 * 125.87155 * 35.32391 * 11 2 1 13 13 C 1.35352 * 106.17693 * 180.11507 * 12 11 2 14 14 C 1.50700 * 126.75361 * 179.84844 * 13 12 11 15 15 N 1.46498 * 109.46769 * 94.71485 * 14 13 12 16 16 C 1.36943 * 119.99752 * 179.72432 * 15 14 13 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47213 * 60.00246 * 20 18 16 22 22 H 1.48502 * 109.47317 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47081 * 299.99875 * 20 18 16 24 24 N 1.33772 * 106.49634 * 359.59642 * 13 12 11 25 25 N 1.28636 * 108.88627 * 0.25926 * 24 13 12 26 26 H 1.08999 * 109.47623 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47529 * 300.00543 * 1 2 3 28 28 H 1.09008 * 109.46573 * 60.00147 * 1 2 3 29 29 H 1.08008 * 119.98587 * 0.02562 * 5 4 2 30 30 H 1.07997 * 120.01645 * 180.26050 * 6 5 4 31 31 H 1.08002 * 120.00980 * 179.97438 * 9 7 6 32 32 H 1.07998 * 119.98579 * 180.02562 * 10 9 7 33 33 H 1.08002 * 126.91295 * 359.96910 * 12 11 2 34 34 H 1.09004 * 109.47210 * 334.71843 * 14 13 12 35 35 H 1.08994 * 109.47121 * 214.71813 * 14 13 12 36 36 H 0.97001 * 120.00384 * 0.02562 * 15 14 13 37 37 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.7027 -2.0356 -1.4458 6 6 2.1589 -2.6868 -2.5762 7 6 2.9550 -2.0145 -3.4880 8 9 3.4053 -2.6513 -4.5910 9 6 3.2888 -0.6887 -3.2685 10 6 2.8268 -0.0380 -2.1403 11 7 2.0182 -0.6906 1.1961 12 6 1.4390 -1.7626 1.7847 13 6 2.2131 -2.0714 2.8512 14 6 1.9886 -3.1912 3.8344 15 7 2.7597 -4.3661 3.4207 16 6 2.7165 -5.5118 4.1695 17 1 2.1104 -5.5507 5.0626 18 6 3.4517 -6.6232 3.7807 19 7 4.1907 -6.5756 2.6926 20 14 3.3921 -8.1863 4.8017 21 1 1.9945 -8.6844 4.8634 22 1 4.2588 -9.2183 4.1780 23 1 3.8763 -7.8987 6.1758 24 7 3.2198 -1.1905 2.8576 25 7 3.0754 -0.3860 1.8643 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.0850 -2.5611 -0.7324 30 1 1.8978 -3.7208 -2.7464 31 1 3.9101 -0.1634 -3.9788 32 1 3.0867 0.9962 -1.9692 33 1 0.5386 -2.2684 1.4686 34 1 0.9285 -3.4436 3.8618 35 1 2.3125 -2.8746 4.8258 36 1 3.3044 -4.3311 2.6188 37 1 4.7041 -7.3524 2.4207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603176960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:15 Heat of formation + Delta-G solvation = 70.952345 kcal Electronic energy + Delta-G solvation = -22150.703250 eV Core-core repulsion = 18651.342027 eV Total energy + Delta-G solvation = -3499.361222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.00972 -44.25484 -40.41811 -37.11364 -36.36119 -33.81208 -32.43356 -32.22739 -31.58075 -29.98600 -27.71752 -25.69911 -24.73264 -24.18117 -23.52239 -22.21894 -21.47058 -19.34464 -18.84524 -18.28728 -17.78853 -17.14918 -16.69895 -16.69003 -16.18234 -15.93646 -15.53004 -15.26563 -14.99622 -14.69452 -14.56705 -14.28070 -14.03659 -13.75151 -13.64105 -13.29993 -13.05717 -12.72896 -12.69459 -12.57530 -12.42189 -12.12152 -12.02469 -11.86924 -11.74332 -11.03995 -10.93362 -10.19361 -10.15399 -9.78594 -9.00897 -7.92281 -5.22724 -0.13043 0.16379 0.66795 1.45659 1.49697 1.53724 1.54554 1.60582 2.50477 2.60564 3.16012 3.26291 3.38877 3.41856 3.58234 3.77121 3.83960 3.95757 4.01957 4.18495 4.22710 4.27500 4.32268 4.56662 4.69213 4.73795 4.84166 4.86541 4.89657 5.04993 5.10599 5.15007 5.16428 5.20910 5.33742 5.51673 5.73084 5.77274 6.27026 7.33995 7.56366 8.05749 8.31630 9.31501 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.004253 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.671907 B = 6582.629977 C = 7963.163013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.141 0.859 4 C -0.127 4.127 5 C -0.077 4.077 6 C -0.166 4.166 7 C 0.088 3.912 8 F -0.148 7.148 9 C -0.155 4.155 10 C -0.063 4.063 11 N -0.275 5.275 12 C -0.019 4.019 13 C -0.037 4.037 14 C 0.235 3.765 15 N -0.739 5.739 16 C -0.244 4.244 17 H 0.085 0.915 18 C -0.076 4.076 19 N -0.974 5.974 20 Si 0.978 3.022 21 H -0.271 1.271 22 H -0.299 1.299 23 H -0.279 1.279 24 N -0.301 5.301 25 N -0.109 5.109 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.221 0.779 34 H 0.063 0.937 35 H 0.028 0.972 36 H 0.370 0.630 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.510 17.024 -13.543 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.083 3.917 3 H 0.159 0.841 4 C -0.129 4.129 5 C -0.095 4.095 6 C -0.184 4.184 7 C 0.069 3.931 8 F -0.127 7.127 9 C -0.174 4.174 10 C -0.081 4.081 11 N -0.070 5.070 12 C -0.170 4.170 13 C -0.176 4.176 14 C 0.107 3.893 15 N -0.381 5.381 16 C -0.376 4.376 17 H 0.103 0.897 18 C -0.268 4.268 19 N -0.625 5.625 20 Si 0.807 3.193 21 H -0.196 1.196 22 H -0.225 1.225 23 H -0.205 1.205 24 N -0.168 5.168 25 N -0.087 5.087 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.132 0.868 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.178 0.822 32 H 0.186 0.814 33 H 0.238 0.762 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.201 0.799 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.362 17.910 -13.327 24.612 hybrid contribution -0.056 -2.042 -0.246 2.058 sum -10.417 15.868 -13.573 23.335 Atomic orbital electron populations 1.22281 0.88496 1.05042 1.05744 1.20895 0.97804 0.96677 0.76348 0.84145 1.19996 1.01167 0.94908 0.96780 1.21059 0.98308 0.94166 0.95993 1.21326 1.00138 1.01727 0.95235 1.18095 0.98032 0.92298 0.84706 1.91487 1.87551 1.82321 1.51292 1.21427 1.02783 0.92672 1.00475 1.21243 0.93493 1.01601 0.91812 1.47836 1.16729 1.21238 1.21156 1.23620 1.04009 0.93374 0.96044 1.22267 0.94649 1.00054 1.00630 1.18972 0.95871 0.81918 0.92513 1.42514 1.55690 1.09802 1.30134 1.19677 1.22239 0.90333 1.05334 0.89735 1.25623 0.99982 1.01824 0.99359 1.69859 1.34739 1.30735 1.27128 0.85145 0.77644 0.78768 0.77793 1.19640 1.22497 1.20496 1.75021 1.22304 1.04913 1.14539 1.78136 1.05436 1.21996 1.03167 0.90535 0.90111 0.86788 0.84439 0.84233 0.82229 0.81408 0.76247 0.91889 0.95457 0.79918 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.65 71.98 0.62 -0.74 16 2 C 0.18 2.77 3.47 44.25 0.15 2.92 16 3 H 0.14 1.59 7.87 -2.39 -0.02 1.57 16 4 C -0.13 -2.20 4.98 -19.86 -0.10 -2.30 16 5 C -0.08 -1.58 8.82 22.26 0.20 -1.38 16 6 C -0.17 -3.72 10.03 22.31 0.22 -3.50 16 7 C 0.09 1.95 7.30 22.38 0.16 2.11 16 8 F -0.15 -3.62 17.27 44.97 0.78 -2.84 16 9 C -0.16 -2.66 10.03 22.31 0.22 -2.44 16 10 C -0.06 -0.94 9.67 22.26 0.22 -0.72 16 11 N -0.28 -7.08 3.18 -330.75 -1.05 -8.13 16 12 C -0.02 -0.52 9.49 83.49 0.79 0.27 16 13 C -0.04 -1.42 6.61 41.60 0.28 -1.14 16 14 C 0.23 9.88 6.82 85.63 0.58 10.47 16 15 N -0.74 -39.27 5.59 -347.18 -1.94 -41.21 16 16 C -0.24 -13.85 9.99 84.03 0.84 -13.01 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 19 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 20 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 N -0.30 -12.51 12.41 -48.60 -0.60 -13.12 16 25 N -0.11 -3.79 13.17 37.02 0.49 -3.30 16 26 H 0.08 0.66 6.44 -2.39 -0.02 0.64 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.14 2.63 6.51 -2.91 -0.02 2.61 16 30 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 32 H 0.17 1.40 7.94 -2.91 -0.02 1.38 16 33 H 0.22 4.31 7.07 -2.91 -0.02 4.29 16 34 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.37 21.62 7.66 -92.71 -0.71 20.91 16 37 H 0.25 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.14 325.23 5.03 -72.10 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.40 Total: 22.63 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 4.66 Total: -13.44 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -2.83 Total: -127.12 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -77.14 5.03 -72.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603176960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.056 kcal (2) G-P(sol) polarization free energy of solvation -77.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds