Wall clock time and date at job start Tue Mar 31 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86795 * 120.00289 * 2 1 4 4 H 1.48500 * 109.47270 * 270.00009 * 3 2 1 5 5 H 1.48498 * 109.47092 * 29.99776 * 3 2 1 6 6 H 1.48497 * 109.47732 * 149.99757 * 3 2 1 7 7 C 1.37876 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00004 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00470 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47511 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47129 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99682 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00128 * 355.04252 * 12 11 10 14 14 N 1.34784 * 119.99894 * 175.04276 * 12 11 10 15 15 C 1.46383 * 119.79696 * 184.97523 * 14 12 11 16 16 C 1.52635 * 110.96033 * 116.41626 * 15 14 12 17 17 O 1.43224 * 110.13981 * 61.48955 * 16 15 14 18 18 C 1.35625 * 115.82309 * 270.57318 * 17 16 15 19 19 C 1.38828 * 120.21151 * 253.12744 * 18 17 16 20 20 C 1.38136 * 119.84384 * 175.09930 * 19 18 17 21 21 C 1.38282 * 120.32338 * 0.05961 * 20 19 18 22 22 C 1.38431 * 119.99091 * 0.88380 * 21 20 19 23 23 C 1.37704 * 119.69471 * 359.79225 * 22 21 20 24 24 C 1.46657 * 119.79805 * 5.25272 * 14 12 11 25 25 H 0.97008 * 120.00200 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47046 * 60.00098 * 9 7 2 27 27 H 1.09000 * 109.47430 * 300.00029 * 9 7 2 28 28 H 1.08997 * 109.47256 * 300.00447 * 10 9 7 29 29 H 1.09003 * 109.46925 * 59.99976 * 10 9 7 30 30 H 0.97003 * 120.00048 * 0.02562 * 11 10 9 31 31 H 1.09005 * 109.12594 * 236.87365 * 15 14 12 32 32 H 1.08995 * 109.13159 * 355.97591 * 15 14 12 33 33 H 1.09003 * 109.46457 * 301.22677 * 16 15 14 34 34 H 1.09003 * 109.16853 * 181.56516 * 16 15 14 35 35 H 1.07999 * 120.07853 * 355.10211 * 19 18 17 36 36 H 1.08004 * 119.83903 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.00668 * 180.87125 * 21 20 19 38 38 H 1.08005 * 120.15702 * 179.80547 * 22 21 20 39 39 H 1.09003 * 109.59258 * 19.98857 * 24 14 12 40 40 H 1.08992 * 109.59194 * 140.28488 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4865 -2.6366 0.0009 12 6 6.1603 -3.8038 0.0014 13 8 5.5558 -4.8548 0.0928 14 7 7.5044 -3.8060 -0.0996 15 6 8.2235 -5.0764 -0.2086 16 6 8.9467 -5.1811 -1.5487 17 8 9.9167 -4.1342 -1.6688 18 6 9.4718 -2.9767 -2.2179 19 6 9.8462 -2.6264 -3.5081 20 6 9.3091 -1.4984 -4.0973 21 6 8.4012 -0.7156 -3.4080 22 6 8.0404 -1.0509 -2.1143 23 6 8.5862 -2.1676 -1.5216 24 6 8.2378 -2.5361 -0.0933 25 1 -0.4851 0.8401 -0.0004 26 1 3.8744 -0.6801 0.8912 27 1 3.8752 -0.6805 -0.8888 28 1 3.6578 -3.1507 0.8906 29 1 3.6585 -3.1502 -0.8893 30 1 5.9715 -1.7965 0.0014 31 1 8.9518 -5.1450 0.5995 32 1 7.5130 -5.8980 -0.1184 33 1 8.2229 -5.0976 -2.3595 34 1 9.4481 -6.1470 -1.6103 35 1 10.5556 -3.2344 -4.0498 36 1 9.6001 -1.2261 -5.1012 37 1 7.9738 0.1574 -3.8787 38 1 7.3340 -0.4396 -1.5723 39 1 7.6142 -1.7560 0.3436 40 1 9.1510 -2.6443 0.4917 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612162836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:41 Heat of formation + Delta-G solvation = -52.786721 kcal Electronic energy + Delta-G solvation = -23258.666924 eV Core-core repulsion = 19845.107527 eV Total energy + Delta-G solvation = -3413.559397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97466 -40.60468 -38.46354 -36.90167 -36.57379 -34.81636 -33.02494 -32.20313 -31.48186 -29.66014 -27.39884 -26.76756 -24.41404 -23.26122 -22.67565 -22.39564 -21.06079 -19.57486 -18.97854 -18.70634 -17.59793 -17.08296 -16.84975 -16.49025 -16.27867 -16.21407 -15.68737 -15.39054 -15.29332 -14.99065 -14.70272 -14.51342 -14.33663 -13.81139 -13.41499 -13.14752 -13.06285 -12.99845 -12.80290 -12.51632 -12.18865 -12.16967 -12.01724 -11.75826 -11.52818 -11.30880 -11.11862 -10.78039 -10.28418 -9.89641 -9.65736 -9.50254 -8.29021 -6.36468 0.13849 0.33009 1.39442 1.42572 1.53513 1.58569 2.03122 2.37753 2.39347 2.83586 3.06114 3.11466 3.61674 3.74113 3.93383 4.06772 4.10619 4.22235 4.23111 4.32230 4.43156 4.46910 4.47560 4.54756 4.62087 4.74074 4.78708 4.81904 5.00230 5.11108 5.37239 5.37652 5.40238 5.43178 5.45772 5.53404 5.65311 5.76454 5.81552 6.23433 6.46516 6.70110 6.87790 7.27978 7.46316 8.87850 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.004507 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.954989 B = 6211.519755 C = 7368.917579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.538 4.538 8 H 0.028 0.972 9 C -0.010 4.010 10 C 0.164 3.836 11 N -0.730 5.730 12 C 0.700 3.300 13 O -0.632 6.632 14 N -0.623 5.623 15 C 0.093 3.907 16 C 0.057 3.943 17 O -0.333 6.333 18 C 0.089 3.911 19 C -0.144 4.144 20 C -0.103 4.103 21 C -0.132 4.132 22 C -0.101 4.101 23 C -0.152 4.152 24 C 0.153 3.847 25 H 0.268 0.732 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.405 0.595 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.515 -2.141 -5.705 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.048 4.048 10 C 0.039 3.961 11 N -0.387 5.387 12 C 0.402 3.598 13 O -0.514 6.514 14 N -0.359 5.359 15 C -0.029 4.029 16 C -0.019 4.019 17 O -0.250 6.250 18 C 0.045 3.955 19 C -0.162 4.162 20 C -0.121 4.121 21 C -0.150 4.150 22 C -0.120 4.120 23 C -0.154 4.154 24 C 0.030 3.970 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.243 0.757 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.115 0.885 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 26.097 -2.866 -5.558 26.836 hybrid contribution -0.569 0.848 -0.006 1.021 sum 25.529 -2.018 -5.565 26.206 Atomic orbital electron populations 1.70074 1.08622 1.28429 1.51956 1.26059 0.95651 1.03815 0.93618 0.85566 0.79744 0.77331 0.79429 1.18796 1.21347 1.15852 1.21220 0.91461 0.93392 1.51609 0.95339 1.19630 0.94462 0.92660 0.98022 1.20913 0.76896 0.98470 0.99785 1.45314 1.07405 1.07186 1.78776 1.16121 0.82134 0.84044 0.77505 1.90862 1.68467 1.32205 1.59873 1.47127 1.03351 1.08181 1.77233 1.22023 0.96312 0.85656 0.98956 1.23342 0.91306 0.90925 0.96292 1.86083 1.37037 1.20876 1.80965 1.18786 0.96300 0.88183 0.92185 1.21523 1.02167 0.99636 0.92891 1.21389 0.96018 0.93739 1.00931 1.21554 0.98069 1.00844 0.94547 1.21166 0.98755 0.96082 0.95982 1.20856 0.99167 0.97597 0.97733 1.20760 0.98250 0.85050 0.92899 0.92329 0.94507 0.94601 0.93926 0.94113 0.75717 0.88472 0.88737 0.93513 0.84201 0.84026 0.83080 0.83731 0.84432 0.88547 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 2 C 0.01 0.32 5.47 84.66 0.46 0.79 16 3 Si 0.96 41.64 27.47 68.60 1.88 43.53 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 7 C -0.54 -30.66 9.66 25.60 0.25 -30.41 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C -0.01 -0.44 4.15 29.85 0.12 -0.32 16 10 C 0.16 6.84 5.62 86.38 0.49 7.32 16 11 N -0.73 -24.30 5.43 -478.53 -2.60 -26.90 16 12 C 0.70 24.02 8.26 179.05 1.48 25.50 16 13 O -0.63 -27.03 15.66 -3.99 -0.06 -27.09 16 14 N -0.62 -15.83 2.69 -843.17 -2.26 -18.09 16 15 C 0.09 1.96 6.29 86.28 0.54 2.50 16 16 C 0.06 1.02 6.68 71.86 0.48 1.50 16 17 O -0.33 -6.76 9.90 -89.38 -0.89 -7.65 16 18 C 0.09 1.89 5.62 22.52 0.13 2.02 16 19 C -0.14 -2.61 10.00 22.39 0.22 -2.38 16 20 C -0.10 -1.64 10.03 22.26 0.22 -1.42 16 21 C -0.13 -2.29 10.06 22.33 0.22 -2.06 16 22 C -0.10 -1.98 9.71 22.19 0.22 -1.76 16 23 C -0.15 -3.17 5.48 -19.60 -0.11 -3.28 16 24 C 0.15 3.04 5.49 85.88 0.47 3.51 16 25 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 26 H 0.04 1.53 7.20 -2.39 -0.02 1.52 16 27 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.40 10.88 6.06 -92.71 -0.56 10.32 16 31 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.09 2.30 6.86 -2.39 -0.02 2.28 16 33 H 0.05 1.00 7.88 -2.39 -0.02 0.98 16 34 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.14 2.36 8.01 -2.91 -0.02 2.33 16 39 H 0.10 1.71 5.82 -2.39 -0.01 1.70 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -74.53 328.94 2.01 -72.53 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.43 Total: 20.96 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.20 Total: 1.51 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -4.56 Total: -103.79 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.95 Total: -34.74 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.53 kcal Total: -74.53 2.01 -72.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612162836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.741 kcal (2) G-P(sol) polarization free energy of solvation -74.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds