Wall clock time and date at job start Tue Mar 31 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 116.99741 * 2 1 4 4 C 1.39047 * 119.89095 * 0.02562 * 3 2 1 5 5 C 1.38022 * 120.40371 * 179.72443 * 4 3 2 6 6 C 1.38662 * 120.17211 * 0.24945 * 5 4 3 7 7 O 1.35674 * 120.11368 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99976 * 354.66289 * 7 6 5 9 9 C 1.53001 * 109.47245 * 178.86074 * 8 7 6 10 10 C 1.50698 * 115.54847 * 279.70059 * 9 8 7 11 11 H 1.08007 * 119.99868 * 144.25292 * 10 9 8 12 12 C 1.37877 * 120.00011 * 324.25328 * 10 9 8 13 13 N 1.31513 * 119.99896 * 338.03162 * 12 10 9 14 14 Si 1.86800 * 120.00006 * 158.03157 * 12 10 9 15 15 H 1.48503 * 109.47357 * 90.00080 * 14 12 10 16 16 H 1.48494 * 109.47185 * 209.99913 * 14 12 10 17 17 H 1.48496 * 109.47118 * 329.99953 * 14 12 10 18 18 C 1.52995 * 117.50154 * 133.99060 * 9 8 7 19 19 C 1.52999 * 117.50052 * 65.36533 * 9 8 7 20 20 C 1.40395 * 119.77790 * 0.02562 * 6 5 4 21 21 C 1.46775 * 120.20496 * 180.02562 * 20 6 5 22 22 C 1.50699 * 120.00541 * 181.24800 * 21 20 6 23 23 O 1.21305 * 119.99900 * 1.24972 * 21 20 6 24 24 C 1.38125 * 119.88602 * 180.27953 * 3 2 1 25 25 H 1.09001 * 109.46786 * 299.99751 * 1 2 3 26 26 H 1.08996 * 109.47363 * 59.99375 * 1 2 3 27 27 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.79374 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.91557 * 180.27613 * 5 4 3 30 30 H 1.08995 * 109.46704 * 298.85681 * 8 7 6 31 31 H 1.08996 * 109.46959 * 58.86158 * 8 7 6 32 32 H 0.97001 * 119.99553 * 185.38657 * 13 12 10 33 33 H 1.09004 * 117.50104 * 359.97438 * 18 9 8 34 34 H 1.08998 * 117.50401 * 145.01856 * 18 9 8 35 35 H 1.08996 * 117.50227 * 214.97875 * 19 9 8 36 36 H 1.09002 * 117.49896 * 359.97438 * 19 9 8 37 37 H 1.08997 * 109.47406 * 89.99869 * 22 21 20 38 38 H 1.09001 * 109.47227 * 210.00165 * 22 21 20 39 39 H 1.09003 * 109.46777 * 329.99969 * 22 21 20 40 40 H 1.08001 * 120.09149 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2868 2.3763 0.0005 5 6 1.9023 3.6117 0.0063 6 6 3.2860 3.7009 0.0063 7 8 3.8898 4.9158 0.0125 8 6 3.0432 6.0616 -0.0997 9 6 3.8944 7.3319 -0.0462 10 6 4.3124 7.7765 1.3317 11 1 5.2831 8.2251 1.4831 12 6 3.4556 7.6105 2.3992 13 7 2.1632 7.4833 2.1914 14 14 4.1305 7.5664 4.1404 15 1 4.1576 8.9433 4.6960 16 1 3.2624 6.7085 4.9862 17 1 5.5081 7.0123 4.1234 18 6 3.6063 8.4195 -1.0828 19 6 4.8761 7.5734 -1.1945 20 6 4.0602 2.5297 0.0000 21 6 5.5256 2.6132 0.0006 22 6 6.3522 1.3536 -0.0347 23 8 6.0714 3.6961 0.0294 24 6 3.4258 1.2813 -0.0058 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2086 2.3138 0.0005 29 1 1.3046 4.5112 0.0112 30 1 2.5053 6.0244 -1.0469 31 1 2.3292 6.0677 0.7237 32 1 1.5525 7.4451 2.9441 33 1 2.8107 8.2300 -1.8034 34 1 3.7189 9.4571 -0.7684 35 1 5.8241 8.0543 -0.9535 36 1 4.9160 6.8271 -1.9879 37 1 6.5503 1.0778 -1.0704 38 1 7.2962 1.5239 0.4829 39 1 5.8079 0.5480 0.4581 40 1 4.0137 0.3753 -0.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000663923134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:15 Heat of formation + Delta-G solvation = -52.843476 kcal Electronic energy + Delta-G solvation = -23346.923616 eV Core-core repulsion = 19901.069007 eV Total energy + Delta-G solvation = -3445.854609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33739 -38.92501 -38.15397 -36.52397 -35.35594 -32.22869 -31.83562 -29.54185 -29.12359 -27.05117 -26.32470 -25.34503 -23.51149 -21.70579 -21.09457 -19.83492 -19.06720 -17.79068 -17.07028 -16.76105 -15.88094 -15.74050 -15.24418 -15.10177 -14.62790 -14.54767 -14.29883 -14.22741 -13.94167 -13.36024 -12.89806 -12.74330 -12.40895 -12.27211 -12.06758 -11.84835 -11.80912 -11.45149 -11.19076 -10.97890 -10.85233 -10.67304 -10.44346 -10.26053 -9.83919 -9.46780 -9.24481 -9.11778 -8.89722 -8.71718 -8.06316 -7.37143 -6.15649 -4.07054 0.90583 1.72226 2.77956 3.26716 3.30670 3.35202 3.45336 3.93403 4.00899 4.36802 4.38076 4.85126 4.94938 4.98097 5.07188 5.08393 5.29680 5.32793 5.41512 5.50041 5.56299 5.58398 5.65931 5.90804 5.99305 6.02449 6.15339 6.21891 6.40817 6.43692 6.51717 6.57400 6.74803 6.78427 6.84874 7.01053 7.33924 7.38037 7.43360 7.88246 8.03646 8.23717 8.38328 8.83702 9.47396 10.88652 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.005410 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.969924 B = 5173.998781 C = 5570.255479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.054 3.946 4 C -0.130 4.130 5 C -0.187 4.187 6 C 0.177 3.823 7 O -0.267 6.267 8 C 0.078 3.922 9 C 0.053 3.947 10 C -0.481 4.481 11 H 0.065 0.935 12 C 0.072 3.928 13 N -0.881 5.881 14 Si 0.887 3.113 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.269 1.269 18 C -0.193 4.193 19 C -0.195 4.195 20 C -0.188 4.188 21 C 0.384 3.616 22 C -0.196 4.196 23 O -0.422 6.422 24 C -0.071 4.071 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.129 0.871 29 H 0.142 0.858 30 H 0.027 0.973 31 H 0.115 0.885 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.086 -14.777 -4.910 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.010 3.990 4 C -0.149 4.149 5 C -0.206 4.206 6 C 0.126 3.874 7 O -0.177 6.177 8 C 0.004 3.996 9 C 0.052 3.948 10 C -0.518 4.518 11 H 0.083 0.917 12 C -0.130 4.130 13 N -0.519 5.519 14 Si 0.715 3.285 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.194 1.194 18 C -0.231 4.231 19 C -0.232 4.232 20 C -0.189 4.189 21 C 0.260 3.740 22 C -0.253 4.253 23 O -0.295 6.295 24 C -0.090 4.090 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.045 0.955 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.655 -14.385 -4.768 15.386 hybrid contribution -0.508 0.140 0.865 1.013 sum -3.163 -14.246 -3.903 15.105 Atomic orbital electron populations 1.22978 0.78994 1.03458 1.01215 1.86028 1.20811 1.26650 1.90142 1.18595 0.92048 0.84111 1.04287 1.21229 0.99913 0.91743 1.02009 1.21267 0.93870 0.98738 1.06709 1.19404 0.90582 0.86867 0.90504 1.86343 1.36427 1.11099 1.83865 1.22958 0.93837 0.82091 1.00725 1.18721 0.95669 0.89970 0.90420 1.20471 1.01765 1.39787 0.89743 0.91728 1.24927 0.94503 0.94216 0.99391 1.69826 1.01650 1.48950 1.31435 0.86643 0.79832 0.78066 0.84002 1.20581 1.20971 1.19373 1.23012 0.98014 0.97695 1.04398 1.22763 0.93992 1.03278 1.03183 1.19709 0.95240 0.90748 1.13250 1.22054 0.87916 0.90710 0.73362 1.22211 1.01222 0.97679 1.04192 1.90694 1.73880 1.31032 1.33914 1.20374 0.91341 0.96697 1.00586 0.92860 0.92937 0.88603 0.85287 0.84056 0.95468 0.86754 0.92640 0.91728 0.89846 0.90373 0.91197 0.89039 0.89762 0.89987 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.03 10.49 -19.69 -0.21 -4.24 16 3 C 0.05 0.77 6.67 -39.32 -0.26 0.50 16 4 C -0.13 -1.91 9.02 -39.36 -0.36 -2.26 16 5 C -0.19 -3.33 9.04 -39.50 -0.36 -3.69 16 6 C 0.18 3.59 6.70 -38.61 -0.26 3.33 16 7 O -0.27 -6.44 8.18 -40.67 -0.33 -6.78 16 8 C 0.08 1.88 4.42 37.16 0.16 2.05 16 9 C 0.05 1.36 1.98 -155.66 -0.31 1.05 16 10 C -0.48 -13.58 8.98 -34.44 -0.31 -13.89 16 11 H 0.06 1.84 7.91 -52.48 -0.42 1.42 16 12 C 0.07 1.98 5.03 -17.82 -0.09 1.89 16 13 N -0.88 -24.26 11.14 55.43 0.62 -23.64 16 14 Si 0.89 21.59 29.60 -169.99 -5.03 16.56 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 18 C -0.19 -4.46 9.88 -26.73 -0.26 -4.73 16 19 C -0.19 -4.54 9.93 -26.73 -0.27 -4.81 16 20 C -0.19 -3.30 5.88 -104.96 -0.62 -3.91 16 21 C 0.38 6.68 7.21 -30.86 -0.22 6.46 16 22 C -0.20 -2.26 9.78 36.01 0.35 -1.91 16 23 O -0.42 -9.40 15.90 -16.41 -0.26 -9.66 16 24 C -0.07 -1.02 9.30 -38.95 -0.36 -1.38 16 25 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 26 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.13 1.51 6.27 -52.49 -0.33 1.18 16 29 H 0.14 2.54 6.29 -52.49 -0.33 2.21 16 30 H 0.03 0.60 7.75 -51.93 -0.40 0.20 16 31 H 0.12 2.95 4.63 -51.93 -0.24 2.70 16 32 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 33 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 34 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 35 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.76 6.42 -51.93 -0.33 0.42 16 40 H 0.14 1.56 6.33 -52.49 -0.33 1.23 16 LS Contribution 336.41 15.07 5.07 5.07 Total: -1.00 -32.00 336.41 -7.58 -39.58 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.27 Total: 3.16 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -2.16 Total: -20.04 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.62 Total: -23.64 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.80 Total: -20.67 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.00 -7.58 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000663923134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.268 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds