Wall clock time and date at job start Tue Mar 31 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 116.99741 * 2 1 4 4 C 1.39047 * 119.89095 * 0.02562 * 3 2 1 5 5 C 1.38022 * 120.40371 * 179.72443 * 4 3 2 6 6 C 1.38662 * 120.17211 * 0.24945 * 5 4 3 7 7 O 1.35674 * 120.11368 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99976 * 354.66289 * 7 6 5 9 9 C 1.53001 * 109.47245 * 178.86074 * 8 7 6 10 10 C 1.50698 * 115.54847 * 279.70059 * 9 8 7 11 11 H 1.08007 * 119.99868 * 144.25292 * 10 9 8 12 12 C 1.37877 * 120.00011 * 324.25328 * 10 9 8 13 13 N 1.31513 * 119.99896 * 338.03162 * 12 10 9 14 14 Si 1.86800 * 120.00006 * 158.03157 * 12 10 9 15 15 H 1.48503 * 109.47357 * 90.00080 * 14 12 10 16 16 H 1.48494 * 109.47185 * 209.99913 * 14 12 10 17 17 H 1.48496 * 109.47118 * 329.99953 * 14 12 10 18 18 C 1.52995 * 117.50154 * 133.99060 * 9 8 7 19 19 C 1.52999 * 117.50052 * 65.36533 * 9 8 7 20 20 C 1.40395 * 119.77790 * 0.02562 * 6 5 4 21 21 C 1.46775 * 120.20496 * 180.02562 * 20 6 5 22 22 C 1.50699 * 120.00541 * 181.24800 * 21 20 6 23 23 O 1.21305 * 119.99900 * 1.24972 * 21 20 6 24 24 C 1.38125 * 119.88602 * 180.27953 * 3 2 1 25 25 H 1.09001 * 109.46786 * 299.99751 * 1 2 3 26 26 H 1.08996 * 109.47363 * 59.99375 * 1 2 3 27 27 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.79374 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.91557 * 180.27613 * 5 4 3 30 30 H 1.08995 * 109.46704 * 298.85681 * 8 7 6 31 31 H 1.08996 * 109.46959 * 58.86158 * 8 7 6 32 32 H 0.97001 * 119.99553 * 185.38657 * 13 12 10 33 33 H 1.09004 * 117.50104 * 359.97438 * 18 9 8 34 34 H 1.08998 * 117.50401 * 145.01856 * 18 9 8 35 35 H 1.08996 * 117.50227 * 214.97875 * 19 9 8 36 36 H 1.09002 * 117.49896 * 359.97438 * 19 9 8 37 37 H 1.08997 * 109.47406 * 89.99869 * 22 21 20 38 38 H 1.09001 * 109.47227 * 210.00165 * 22 21 20 39 39 H 1.09003 * 109.46777 * 329.99969 * 22 21 20 40 40 H 1.08001 * 120.09149 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2868 2.3763 0.0005 5 6 1.9023 3.6117 0.0063 6 6 3.2860 3.7009 0.0063 7 8 3.8898 4.9158 0.0125 8 6 3.0432 6.0616 -0.0997 9 6 3.8944 7.3319 -0.0462 10 6 4.3124 7.7765 1.3317 11 1 5.2831 8.2251 1.4831 12 6 3.4556 7.6105 2.3992 13 7 2.1632 7.4833 2.1914 14 14 4.1305 7.5664 4.1404 15 1 4.1576 8.9433 4.6960 16 1 3.2624 6.7085 4.9862 17 1 5.5081 7.0123 4.1234 18 6 3.6063 8.4195 -1.0828 19 6 4.8761 7.5734 -1.1945 20 6 4.0602 2.5297 0.0000 21 6 5.5256 2.6132 0.0006 22 6 6.3522 1.3536 -0.0347 23 8 6.0714 3.6961 0.0294 24 6 3.4258 1.2813 -0.0058 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2086 2.3138 0.0005 29 1 1.3046 4.5112 0.0112 30 1 2.5053 6.0244 -1.0469 31 1 2.3292 6.0677 0.7237 32 1 1.5525 7.4451 2.9441 33 1 2.8107 8.2300 -1.8034 34 1 3.7189 9.4571 -0.7684 35 1 5.8241 8.0543 -0.9535 36 1 4.9160 6.8271 -1.9879 37 1 6.5503 1.0778 -1.0704 38 1 7.2962 1.5239 0.4829 39 1 5.8079 0.5480 0.4581 40 1 4.0137 0.3753 -0.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000663923134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:15 Heat of formation + Delta-G solvation = -70.862942 kcal Electronic energy + Delta-G solvation = -23347.704999 eV Core-core repulsion = 19901.069007 eV Total energy + Delta-G solvation = -3446.635992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.62875 -40.13337 -39.71331 -38.13733 -36.84372 -34.31503 -33.09324 -30.66868 -30.31051 -28.26165 -27.80976 -27.31789 -24.72683 -23.17375 -22.82310 -21.29161 -20.76808 -19.07047 -18.55453 -18.32660 -17.38317 -17.02019 -16.63250 -16.46620 -16.25277 -15.84135 -15.74791 -15.64256 -15.47350 -14.94008 -14.40581 -14.08461 -13.72996 -13.48766 -13.39585 -13.07894 -12.97193 -12.93742 -12.87435 -12.73486 -12.40775 -12.23841 -12.15806 -11.93096 -11.40711 -11.39797 -11.02170 -10.68819 -10.57508 -10.15990 -10.04616 -8.71345 -8.23377 -6.21030 -0.36347 0.42581 1.31174 1.36056 1.48290 1.50389 2.30271 2.34308 2.42286 2.73234 2.90972 3.21145 3.62025 3.68950 3.87223 4.09307 4.14654 4.28314 4.29473 4.34041 4.45593 4.47131 4.51357 4.60969 4.63676 4.70956 4.75606 4.79706 4.87768 4.94641 4.98559 5.10989 5.13007 5.20092 5.39438 5.41235 5.45284 5.49488 5.79286 6.31856 6.38672 6.63910 6.71001 6.77403 7.34177 8.79801 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.005410 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.969924 B = 5173.998781 C = 5570.255479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.065 3.935 4 C -0.123 4.123 5 C -0.200 4.200 6 C 0.128 3.872 7 O -0.299 6.299 8 C 0.093 3.907 9 C 0.016 3.984 10 C -0.511 4.511 11 H 0.047 0.953 12 C 0.036 3.964 13 N -0.894 5.894 14 Si 0.939 3.061 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.281 1.281 18 C -0.178 4.178 19 C -0.185 4.185 20 C -0.201 4.201 21 C 0.379 3.621 22 C -0.185 4.185 23 O -0.487 6.487 24 C -0.058 4.058 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.124 0.876 28 H 0.160 0.840 29 H 0.129 0.871 30 H 0.036 0.964 31 H 0.094 0.906 32 H 0.267 0.733 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -17.902 -5.014 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.020 3.980 4 C -0.142 4.142 5 C -0.219 4.219 6 C 0.080 3.920 7 O -0.211 6.211 8 C 0.018 3.982 9 C 0.015 3.985 10 C -0.548 4.548 11 H 0.065 0.935 12 C -0.165 4.165 13 N -0.532 5.532 14 Si 0.765 3.235 15 H -0.191 1.191 16 H -0.201 1.201 17 H -0.206 1.206 18 C -0.216 4.216 19 C -0.222 4.222 20 C -0.203 4.203 21 C 0.259 3.741 22 C -0.241 4.241 23 O -0.364 6.364 24 C -0.077 4.077 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.177 0.823 29 H 0.147 0.853 30 H 0.054 0.946 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.651 -17.543 -4.878 18.571 hybrid contribution -0.320 0.903 0.862 1.289 sum -3.971 -16.640 -4.017 17.573 Atomic orbital electron populations 1.23348 0.76751 1.05733 1.01998 1.86049 1.23050 1.25142 1.89552 1.18726 0.92269 0.84724 1.02234 1.21503 1.01553 0.90652 1.00490 1.21235 0.92972 0.99766 1.07889 1.19908 0.92094 0.86380 0.93650 1.86280 1.37089 1.12202 1.85545 1.22585 0.93142 0.82242 1.00186 1.18920 0.97733 0.91659 0.90186 1.20650 1.01336 1.40950 0.91820 0.93451 1.25497 0.94795 0.93959 1.02245 1.69896 1.02105 1.48878 1.32292 0.85837 0.78561 0.78640 0.80496 1.19144 1.20098 1.20603 1.22985 0.98294 0.96878 1.03433 1.22714 0.93838 1.03284 1.02368 1.20059 0.95758 0.91103 1.13348 1.23006 0.88385 0.91849 0.70846 1.22226 1.00541 0.95050 1.06312 1.90674 1.74799 1.33785 1.37169 1.20716 0.91908 0.96552 0.98483 0.92293 0.91892 0.85761 0.82271 0.85305 0.94569 0.88835 0.92307 0.89679 0.90136 0.90683 0.90285 0.86371 0.89415 0.86860 0.80287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -6.72 10.49 -93.36 -0.98 -7.70 16 3 C 0.07 1.66 6.67 22.44 0.15 1.81 16 4 C -0.12 -3.38 9.02 22.41 0.20 -3.18 16 5 C -0.20 -7.21 9.04 22.32 0.20 -7.01 16 6 C 0.13 5.36 6.70 22.90 0.15 5.52 16 7 O -0.30 -15.21 8.18 -68.93 -0.56 -15.77 16 8 C 0.09 4.70 4.42 71.98 0.32 5.02 16 9 C 0.02 0.83 1.98 -52.93 -0.10 0.73 16 10 C -0.51 -30.06 8.98 25.60 0.23 -29.83 16 11 H 0.05 2.84 7.91 -2.91 -0.02 2.82 16 12 C 0.04 2.04 5.03 84.65 0.43 2.47 16 13 N -0.89 -50.42 11.14 21.45 0.24 -50.18 16 14 Si 0.94 45.30 29.60 68.60 2.03 47.33 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 18 C -0.18 -8.35 9.88 30.59 0.30 -8.05 16 19 C -0.18 -8.86 9.93 30.59 0.30 -8.56 16 20 C -0.20 -6.97 5.88 -20.08 -0.12 -7.08 16 21 C 0.38 13.15 7.21 27.92 0.20 13.35 16 22 C -0.18 -3.75 9.78 71.24 0.70 -3.05 16 23 O -0.49 -22.66 15.90 17.87 0.28 -22.38 16 24 C -0.06 -1.50 9.30 22.68 0.21 -1.29 16 25 H 0.06 0.74 7.65 -2.39 -0.02 0.72 16 26 H 0.06 0.73 7.65 -2.39 -0.02 0.71 16 27 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.16 3.27 6.27 -2.91 -0.02 3.25 16 29 H 0.13 4.85 6.29 -2.91 -0.02 4.84 16 30 H 0.04 1.68 7.75 -2.39 -0.02 1.66 16 31 H 0.09 5.07 4.63 -2.39 -0.01 5.05 16 32 H 0.27 14.18 8.32 -92.71 -0.77 13.41 16 33 H 0.08 3.59 8.08 -2.39 -0.02 3.57 16 34 H 0.08 3.77 8.14 -2.39 -0.02 3.75 16 35 H 0.07 3.57 8.14 -2.39 -0.02 3.55 16 36 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 37 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.11 1.57 6.42 -2.39 -0.02 1.55 16 40 H 0.18 3.09 6.33 -2.91 -0.02 3.07 16 Total: -1.00 -73.66 336.41 6.35 -67.31 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 1.05 Total: 19.22 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 4.29 Total: -37.84 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.24 Total: -50.18 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.26 Total: -45.85 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.66 6.35 -67.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000663923134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.549 kcal (2) G-P(sol) polarization free energy of solvation -73.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds