Wall clock time and date at job start Tue Mar 31 2020 06:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48501 * 109.47129 * 240.00331 * 3 2 1 5 5 H 1.48498 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47240 * 120.00269 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 C 1.47527 * 119.99863 * 179.72391 * 13 12 11 16 16 C 1.39917 * 120.69295 * 359.72216 * 15 13 12 17 17 C 1.38443 * 118.54546 * 179.73610 * 16 15 13 18 18 C 1.38395 * 119.62507 * 0.50730 * 17 16 15 19 19 N 1.32358 * 120.60166 * 359.76198 * 18 17 16 20 20 C 1.32037 * 122.19037 * 359.97438 * 19 18 17 21 21 O 1.35425 * 119.78655 * 180.02562 * 20 19 18 22 22 C 1.51548 * 109.52474 * 179.78171 * 18 17 16 23 23 C 1.54308 * 105.22951 * 342.73564 * 22 18 17 24 24 C 1.51286 * 130.46179 * 180.18889 * 17 16 15 25 25 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 27 27 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 28 28 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 29 29 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 30 30 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 31 31 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 32 32 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 33 33 H 1.08005 * 120.72528 * 359.97244 * 16 15 13 34 34 H 0.96705 * 113.99561 * 269.97935 * 21 20 19 35 35 H 1.09006 * 110.29371 * 101.67451 * 22 18 17 36 36 H 1.08997 * 110.29153 * 223.79447 * 22 18 17 37 37 H 1.09001 * 110.81529 * 268.21777 * 23 22 18 38 38 H 1.09003 * 110.99073 * 144.75942 * 23 22 18 39 39 H 1.09004 * 110.30740 * 316.39455 * 24 17 16 40 40 H 1.09000 * 110.31177 * 78.46574 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7879 -7.5935 -0.0087 15 6 2.9420 -8.4925 -0.0151 16 6 4.3206 -8.2534 -0.0208 17 6 5.1802 -9.3386 -0.0212 18 6 4.6620 -10.6219 -0.0267 19 7 3.3533 -10.8201 -0.0268 20 6 2.4905 -9.8206 -0.0212 21 8 1.1612 -10.0794 -0.0211 22 6 5.7967 -11.6264 -0.0314 23 6 7.0425 -10.8285 -0.4702 24 6 6.6921 -9.3935 -0.0229 25 1 -0.4851 0.8400 0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8881 28 1 2.8714 -3.6047 0.8890 29 1 2.8727 -3.6038 -0.8910 30 1 0.8541 -5.0447 -0.8923 31 1 0.8534 -5.0450 0.8877 32 1 3.3862 -5.9232 -0.0026 33 1 4.7056 -7.2444 -0.0210 34 1 0.7742 -10.1501 -0.9045 35 1 5.9430 -12.0363 0.9680 36 1 5.5904 -12.4264 -0.7424 37 1 7.1723 -10.8765 -1.5514 38 1 7.9358 -11.1865 0.0418 39 1 7.0962 -8.6678 -0.7287 40 1 7.0787 -9.2025 0.9782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728850029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:13 Heat of formation + Delta-G solvation = -59.516865 kcal Electronic energy + Delta-G solvation = -21918.379582 eV Core-core repulsion = 18504.528344 eV Total energy + Delta-G solvation = -3413.851238 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34249 -39.34443 -37.99273 -35.54296 -35.37318 -33.63637 -32.97087 -31.14917 -29.33314 -28.19579 -26.71814 -24.18442 -23.61190 -22.40840 -21.31583 -20.78621 -20.02638 -18.71504 -17.52972 -17.26116 -16.43496 -16.33893 -15.58424 -15.30675 -15.19753 -14.55696 -14.46264 -14.18456 -13.85865 -13.55716 -13.28118 -13.13638 -12.74689 -12.37456 -12.29283 -11.87434 -11.77764 -11.77186 -11.69050 -11.35030 -10.90848 -10.77248 -10.65071 -10.16428 -10.12889 -9.90054 -9.66179 -9.35808 -9.14996 -8.97918 -8.75837 -8.39200 -6.03778 -4.07261 0.31750 0.78796 2.73088 3.02823 3.29184 3.30248 3.35349 3.37178 3.53683 3.93250 4.00235 4.38549 4.41148 4.42249 4.52577 4.72129 4.81633 5.02246 5.21638 5.23531 5.29908 5.31874 5.42031 5.46259 5.53634 5.66398 5.68504 5.73461 5.76470 6.08223 6.12254 6.40276 6.55344 6.77193 6.95839 7.32240 7.56117 7.60579 7.63647 7.73178 7.94476 8.28191 8.35824 8.99125 9.56989 11.07471 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024037 B = 0.002753 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.615179 B =10169.641401 C =11282.569705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.117 3.883 12 N -0.721 5.721 13 C 0.557 3.443 14 O -0.521 6.521 15 C -0.199 4.199 16 C -0.019 4.019 17 C -0.170 4.170 18 C 0.164 3.836 19 N -0.506 5.506 20 C 0.374 3.626 21 O -0.457 6.457 22 C -0.074 4.074 23 C -0.119 4.119 24 C -0.077 4.077 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.396 0.604 33 H 0.143 0.857 34 H 0.405 0.595 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.113 -22.709 -1.890 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.372 5.372 13 C 0.342 3.658 14 O -0.398 6.398 15 C -0.206 4.206 16 C -0.044 4.044 17 C -0.172 4.172 18 C 0.025 3.975 19 N -0.225 5.225 20 C 0.193 3.807 21 O -0.265 6.265 22 C -0.112 4.112 23 C -0.156 4.156 24 C -0.115 4.115 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.160 0.840 34 H 0.265 0.735 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.700 -23.530 -1.297 27.259 hybrid contribution 0.951 1.933 -0.409 2.193 sum 14.651 -21.597 -1.706 26.153 Atomic orbital electron populations 1.69950 1.06067 1.26855 1.50364 1.25028 0.94859 0.99305 0.95238 0.86639 0.79565 0.83089 0.78579 1.20241 1.21248 1.20240 1.21158 0.92939 0.90945 1.51197 0.92702 1.19024 0.93827 0.90779 0.97715 1.21901 0.99824 0.93306 1.00878 1.21699 0.91776 0.84790 1.02265 1.46123 1.10815 1.05683 1.74612 1.17768 0.87864 0.82512 0.77633 1.90818 1.15542 1.84482 1.48957 1.21123 0.94380 0.94982 1.10128 1.21204 0.90917 0.99563 0.92760 1.21386 0.97696 0.94109 1.04032 1.21855 0.89366 0.94546 0.91712 1.66370 1.03197 1.37051 1.15842 1.18884 0.84966 0.85731 0.91084 1.84740 1.14969 1.92982 1.33780 1.21109 0.89929 0.96540 1.03574 1.22317 0.97221 0.94064 1.02046 1.20971 0.89526 0.98117 1.02839 0.92826 0.96233 0.96221 0.92691 0.92704 0.91515 0.91478 0.76987 0.83954 0.73523 0.88741 0.89273 0.90402 0.89604 0.89937 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 2.04 5.67 -4.04 -0.02 2.02 16 12 N -0.72 -10.38 5.51 -61.35 -0.34 -10.72 16 13 C 0.56 8.68 7.77 -12.47 -0.10 8.58 16 14 O -0.52 -9.90 15.20 -16.43 -0.25 -10.15 16 15 C -0.20 -2.60 5.90 -104.72 -0.62 -3.22 16 16 C -0.02 -0.19 9.64 -38.88 -0.37 -0.56 16 17 C -0.17 -1.51 6.14 -104.20 -0.64 -2.15 16 18 C 0.16 1.64 7.32 -81.89 -0.60 1.04 16 19 N -0.51 -6.49 10.36 -8.88 -0.09 -6.58 16 20 C 0.37 5.12 7.77 -16.70 -0.13 4.99 16 21 O -0.46 -6.34 11.67 -39.69 -0.46 -6.80 16 22 C -0.07 -0.46 6.77 -26.78 -0.18 -0.64 16 23 C -0.12 -0.50 7.08 -25.34 -0.18 -0.68 16 24 C -0.08 -0.42 6.77 -26.89 -0.18 -0.60 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.40 4.49 6.58 -40.82 -0.27 4.22 16 33 H 0.14 1.06 6.52 -52.48 -0.34 0.72 16 34 H 0.41 3.89 9.06 45.56 0.41 4.30 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -34.92 338.43 -8.85 -43.77 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.81 Total: 1.55 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -3.71 Total: -6.50 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.31 Total: -43.27 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.71 Total: -16.95 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.92 -8.85 -43.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728850029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.746 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds