Wall clock time and date at job start Tue Mar 31 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 H 1.09001 * 109.47172 * 305.00018 * 3 2 1 5 5 C 1.52997 * 109.47355 * 185.00176 * 3 2 1 6 6 O 1.42898 * 109.47371 * 64.99689 * 3 2 1 7 7 C 1.35683 * 117.00555 * 204.94915 * 6 3 2 8 8 C 1.38596 * 120.15837 * 354.52387 * 7 6 3 9 9 C 1.38133 * 120.11355 * 180.02562 * 8 7 6 10 10 C 1.38593 * 120.44275 * 359.97438 * 9 8 7 11 11 C 1.37736 * 120.32045 * 359.97438 * 10 9 8 12 12 C 1.39966 * 119.88027 * 359.76546 * 11 10 9 13 13 C 1.46867 * 120.21927 * 180.25117 * 12 11 10 14 14 C 1.35198 * 119.99810 * 0.25866 * 13 12 11 15 15 C 1.41665 * 120.00224 * 180.02562 * 14 13 12 16 16 O 1.21697 * 119.99784 * 359.97438 * 15 14 13 17 17 O 1.34912 * 120.00250 * 179.97438 * 15 14 13 18 18 C 1.34817 * 117.00249 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99618 * 0.02562 * 18 17 15 20 20 C 1.38834 * 120.00375 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99568 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46811 * 90.00487 * 22 20 18 24 24 H 1.48501 * 109.46850 * 210.00311 * 22 20 18 25 25 H 1.48493 * 109.47176 * 330.00325 * 22 20 18 26 26 H 1.08994 * 109.47011 * 60.00168 * 1 2 3 27 27 H 1.09001 * 109.46583 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46950 * 300.00035 * 1 2 3 29 29 H 1.08995 * 109.47293 * 240.00252 * 2 1 3 30 30 H 1.09004 * 109.47187 * 119.99350 * 2 1 3 31 31 H 1.09001 * 109.46852 * 300.00038 * 5 3 2 32 32 H 1.09002 * 109.47354 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.46962 * 59.99768 * 5 3 2 34 34 H 1.08002 * 119.94773 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.78256 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.83596 * 180.02562 * 10 9 8 37 37 H 1.08002 * 120.05646 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.00400 * 180.25492 * 13 12 11 39 39 H 1.07999 * 120.00155 * 359.97438 * 14 13 12 40 40 H 0.97005 * 119.99556 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 1.6620 2.0815 1.2210 7 6 1.5533 3.4338 1.2007 8 6 1.9133 4.1443 0.0665 9 6 1.8028 5.5211 0.0471 10 6 1.3319 6.2035 1.1577 11 6 0.9681 5.5154 2.2940 12 6 1.0695 4.1198 2.3265 13 6 0.6784 3.3782 3.5323 14 6 0.2138 4.0431 4.6139 15 6 -0.1630 3.3279 5.7773 16 8 -0.0688 2.1148 5.8029 17 8 -0.6261 3.9914 6.8567 18 6 -0.9675 3.2510 7.9304 19 1 -0.8641 2.1763 7.9002 20 6 -1.4509 3.8700 9.0753 21 7 -1.5762 5.1775 9.1122 22 14 -1.9233 2.8440 10.5631 23 1 -0.7421 2.6835 11.4488 24 1 -3.0121 3.5252 11.3086 25 1 -2.3910 1.5079 10.1148 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8901 31 1 3.9995 0.9054 0.7161 32 1 3.9281 2.4721 -0.1262 33 1 3.8532 0.9571 -1.0572 34 1 2.2808 3.6208 -0.8037 35 1 2.0852 6.0695 -0.8395 36 1 1.2491 7.2800 1.1316 37 1 0.6014 6.0515 3.1569 38 1 0.7619 2.3016 3.5551 39 1 0.1306 5.1197 4.5914 40 1 -1.9143 5.6099 9.9119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729873056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:23 Heat of formation + Delta-G solvation = -85.823676 kcal Electronic energy + Delta-G solvation = -22211.473371 eV Core-core repulsion = 18764.188632 eV Total energy + Delta-G solvation = -3447.284738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.46039 -38.95403 -37.90671 -35.40131 -34.37181 -33.53049 -32.14554 -30.36338 -30.05623 -29.29087 -25.74898 -24.27864 -24.04835 -22.83675 -21.32605 -20.74356 -18.68901 -18.32670 -17.70026 -16.91996 -15.91822 -15.62959 -15.43482 -14.90350 -14.67679 -14.36760 -14.34491 -14.04863 -13.81130 -13.59425 -13.36861 -13.16689 -12.63738 -12.53869 -12.11717 -11.97856 -11.88143 -11.62083 -11.29340 -11.25228 -11.17133 -10.95350 -10.82143 -10.66344 -10.52497 -10.41055 -9.95993 -9.78803 -8.98759 -8.60669 -8.56482 -7.74413 -6.43115 -4.02436 0.75496 1.40200 2.28409 3.05840 3.18043 3.20173 3.26976 3.79050 4.00557 4.28929 4.40601 4.57353 4.61936 4.72631 4.81877 4.92105 5.01500 5.10158 5.18951 5.23394 5.30940 5.33595 5.38652 5.42168 5.58032 5.66721 5.72365 5.76210 5.85982 5.93749 6.00567 6.13249 6.17349 6.28490 6.47668 6.52258 6.73217 6.95742 7.16977 7.39061 7.44193 7.97055 8.79822 9.05784 9.90359 10.74794 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.003411 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.816730 B = 8205.972318 C = 9345.815447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.080 3.920 4 H 0.073 0.927 5 C -0.181 4.181 6 O -0.298 6.298 7 C 0.148 3.852 8 C -0.215 4.215 9 C -0.081 4.081 10 C -0.158 4.158 11 C -0.070 4.070 12 C -0.086 4.086 13 C -0.048 4.048 14 C -0.154 4.154 15 C 0.421 3.579 16 O -0.562 6.562 17 O -0.209 6.209 18 C -0.369 4.369 19 H 0.098 0.902 20 C 0.039 3.961 21 N -0.859 5.859 22 Si 0.945 3.055 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.266 1.266 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 -2.147 -21.253 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.023 3.977 4 H 0.091 0.909 5 C -0.239 4.239 6 O -0.211 6.211 7 C 0.102 3.898 8 C -0.234 4.234 9 C -0.099 4.099 10 C -0.176 4.176 11 C -0.088 4.088 12 C -0.087 4.087 13 C -0.067 4.067 14 C -0.173 4.173 15 C 0.272 3.728 16 O -0.463 6.463 17 O -0.116 6.116 18 C -0.446 4.446 19 H 0.115 0.885 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.769 3.231 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.190 1.190 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.383 -2.412 -20.905 22.301 hybrid contribution -0.108 -0.251 0.476 0.549 sum 7.275 -2.664 -20.429 21.849 Atomic orbital electron populations 1.21775 0.94949 1.02035 1.02553 1.21635 0.97053 0.93746 1.03212 1.22541 0.94990 0.94159 0.85974 0.90921 1.22395 0.95297 1.03174 1.03009 1.86129 1.83134 1.16509 1.35308 1.19119 0.94474 0.82599 0.93628 1.21163 1.08594 0.95360 0.98268 1.20990 0.97336 0.93415 0.98162 1.20975 1.02958 1.00102 0.93609 1.21409 0.96609 0.92323 0.98476 1.18433 1.04346 0.92771 0.93167 1.22025 0.94417 1.00204 0.90078 1.21372 1.02758 1.00508 0.92634 1.19602 0.81123 0.86714 0.85332 1.90674 1.56202 1.15459 1.83951 1.83978 1.66801 1.39867 1.20960 1.21332 1.41908 0.92193 0.89118 0.88480 1.25406 0.96448 0.96213 0.98528 1.69984 1.42014 1.08377 1.29128 0.85646 0.78448 0.79307 0.79680 1.19807 1.20274 1.18982 0.92995 0.92381 0.91510 0.90214 0.90492 0.91176 0.91763 0.91112 0.85368 0.86015 0.85733 0.84463 0.84540 0.85575 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.81 37.16 0.36 -1.13 16 2 C -0.12 -1.04 5.64 -26.73 -0.15 -1.19 16 3 C 0.08 0.77 2.22 -26.73 -0.06 0.71 16 4 H 0.07 0.62 6.31 -51.93 -0.33 0.29 16 5 C -0.18 -1.48 9.17 37.16 0.34 -1.14 16 6 O -0.30 -4.03 8.52 -18.75 -0.16 -4.19 16 7 C 0.15 2.04 6.62 -38.62 -0.26 1.78 16 8 C -0.22 -2.39 8.24 -39.49 -0.33 -2.71 16 9 C -0.08 -0.83 10.03 -39.49 -0.40 -1.23 16 10 C -0.16 -1.78 10.02 -39.63 -0.40 -2.17 16 11 C -0.07 -0.95 9.41 -39.12 -0.37 -1.32 16 12 C -0.09 -1.34 5.88 -104.93 -0.62 -1.96 16 13 C -0.05 -0.90 9.17 -37.17 -0.34 -1.24 16 14 C -0.15 -3.22 9.33 -39.36 -0.37 -3.58 16 15 C 0.42 11.22 7.64 32.04 0.24 11.47 16 16 O -0.56 -16.12 15.36 -19.42 -0.30 -16.42 16 17 O -0.21 -6.27 9.73 -22.02 -0.21 -6.48 16 18 C -0.37 -11.26 9.65 30.95 0.30 -10.96 16 19 H 0.10 2.97 6.86 -52.48 -0.36 2.61 16 20 C 0.04 1.11 5.50 -17.51 -0.10 1.01 16 21 N -0.86 -25.46 13.67 55.49 0.76 -24.70 16 22 Si 0.94 21.56 29.55 -169.99 -5.02 16.54 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.54 6.91 -51.93 -0.36 0.18 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.13 1.12 5.42 -52.49 -0.28 0.84 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.77 6.17 -52.49 -0.32 1.45 16 38 H 0.14 2.73 7.03 -52.48 -0.37 2.36 16 39 H 0.13 2.33 6.08 -52.49 -0.32 2.01 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -34.47 342.37 -7.17 -41.64 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.27 Total: 2.13 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -2.12 Total: -13.67 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.76 Total: -24.70 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.67 Total: -27.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.47 -7.17 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729873056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.183 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds