Wall clock time and date at job start Tue Mar 31 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47083 * 2 1 4 4 H 1.09001 * 109.47172 * 305.00018 * 3 2 1 5 5 C 1.52997 * 109.47355 * 185.00176 * 3 2 1 6 6 O 1.42898 * 109.47371 * 64.99689 * 3 2 1 7 7 C 1.35683 * 117.00555 * 204.94915 * 6 3 2 8 8 C 1.38596 * 120.15837 * 354.52387 * 7 6 3 9 9 C 1.38133 * 120.11355 * 180.02562 * 8 7 6 10 10 C 1.38593 * 120.44275 * 359.97438 * 9 8 7 11 11 C 1.37736 * 120.32045 * 359.97438 * 10 9 8 12 12 C 1.39966 * 119.88027 * 359.76546 * 11 10 9 13 13 C 1.46867 * 120.21927 * 180.25117 * 12 11 10 14 14 C 1.35198 * 119.99810 * 0.25866 * 13 12 11 15 15 C 1.41665 * 120.00224 * 180.02562 * 14 13 12 16 16 O 1.21697 * 119.99784 * 359.97438 * 15 14 13 17 17 O 1.34912 * 120.00250 * 179.97438 * 15 14 13 18 18 C 1.34817 * 117.00249 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99618 * 0.02562 * 18 17 15 20 20 C 1.38834 * 120.00375 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99568 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46811 * 90.00487 * 22 20 18 24 24 H 1.48501 * 109.46850 * 210.00311 * 22 20 18 25 25 H 1.48493 * 109.47176 * 330.00325 * 22 20 18 26 26 H 1.08994 * 109.47011 * 60.00168 * 1 2 3 27 27 H 1.09001 * 109.46583 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46950 * 300.00035 * 1 2 3 29 29 H 1.08995 * 109.47293 * 240.00252 * 2 1 3 30 30 H 1.09004 * 109.47187 * 119.99350 * 2 1 3 31 31 H 1.09001 * 109.46852 * 300.00038 * 5 3 2 32 32 H 1.09002 * 109.47354 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.46962 * 59.99768 * 5 3 2 34 34 H 1.08002 * 119.94773 * 0.02562 * 8 7 6 35 35 H 1.08000 * 119.78256 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.83596 * 180.02562 * 10 9 8 37 37 H 1.08002 * 120.05646 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.00400 * 180.25492 * 13 12 11 39 39 H 1.07999 * 120.00155 * 359.97438 * 14 13 12 40 40 H 0.97005 * 119.99556 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 1.6620 2.0815 1.2210 7 6 1.5533 3.4338 1.2007 8 6 1.9133 4.1443 0.0665 9 6 1.8028 5.5211 0.0471 10 6 1.3319 6.2035 1.1577 11 6 0.9681 5.5154 2.2940 12 6 1.0695 4.1198 2.3265 13 6 0.6784 3.3782 3.5323 14 6 0.2138 4.0431 4.6139 15 6 -0.1630 3.3279 5.7773 16 8 -0.0688 2.1148 5.8029 17 8 -0.6261 3.9914 6.8567 18 6 -0.9675 3.2510 7.9304 19 1 -0.8641 2.1763 7.9002 20 6 -1.4509 3.8700 9.0753 21 7 -1.5762 5.1775 9.1122 22 14 -1.9233 2.8440 10.5631 23 1 -0.7421 2.6835 11.4488 24 1 -3.0121 3.5252 11.3086 25 1 -2.3910 1.5079 10.1148 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8901 31 1 3.9995 0.9054 0.7161 32 1 3.9281 2.4721 -0.1262 33 1 3.8532 0.9571 -1.0572 34 1 2.2808 3.6208 -0.8037 35 1 2.0852 6.0695 -0.8395 36 1 1.2491 7.2800 1.1316 37 1 0.6014 6.0515 3.1569 38 1 0.7619 2.3016 3.5551 39 1 0.1306 5.1197 4.5914 40 1 -1.9143 5.6099 9.9119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729873056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:22 Heat of formation + Delta-G solvation = -106.022966 kcal Electronic energy + Delta-G solvation = -22212.349277 eV Core-core repulsion = 18764.188632 eV Total energy + Delta-G solvation = -3448.160645 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47856 -41.02445 -38.90865 -37.47532 -35.27121 -34.95221 -34.33782 -31.31631 -30.96326 -30.47244 -27.77376 -25.57216 -25.03154 -23.89439 -22.63631 -21.67894 -20.28344 -19.96155 -19.37133 -18.60371 -17.26331 -16.72266 -16.57615 -16.50609 -16.27746 -16.12362 -15.78284 -14.98989 -14.82535 -14.64330 -14.44962 -14.38273 -13.98097 -13.64482 -13.42380 -13.25700 -13.18062 -12.87455 -12.68353 -12.44529 -12.30885 -12.17812 -12.05585 -12.03434 -11.94578 -11.61018 -11.49359 -11.36673 -11.17073 -10.72808 -9.64725 -8.95155 -8.58334 -6.34123 -0.56113 0.44583 0.88935 1.32668 1.41283 1.51210 2.13530 2.17747 2.22691 2.85401 2.90405 3.00772 3.66756 3.78110 3.79659 3.91810 4.00604 4.08564 4.20037 4.29588 4.37590 4.42602 4.50665 4.60772 4.64583 4.70582 4.81430 4.91477 4.94606 5.00647 5.03356 5.10556 5.17176 5.23329 5.28589 5.37102 5.49562 5.51989 5.59484 5.79767 5.83304 6.46619 6.62614 6.85916 7.72836 8.62868 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.003411 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.816730 B = 8205.972318 C = 9345.815447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.071 3.929 4 H 0.092 0.908 5 C -0.177 4.177 6 O -0.325 6.325 7 C 0.149 3.851 8 C -0.215 4.215 9 C -0.056 4.056 10 C -0.162 4.162 11 C -0.070 4.070 12 C -0.137 4.137 13 C 0.010 3.990 14 C -0.205 4.205 15 C 0.427 3.573 16 O -0.595 6.595 17 O -0.240 6.240 18 C -0.421 4.421 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.899 5.899 22 Si 1.022 2.978 23 H -0.258 1.258 24 H -0.256 1.256 25 H -0.264 1.264 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.148 0.852 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.593 -1.506 -24.435 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C 0.015 3.985 4 H 0.109 0.891 5 C -0.234 4.234 6 O -0.239 6.239 7 C 0.103 3.897 8 C -0.234 4.234 9 C -0.074 4.074 10 C -0.180 4.180 11 C -0.088 4.088 12 C -0.138 4.138 13 C -0.009 4.009 14 C -0.223 4.223 15 C 0.280 3.720 16 O -0.497 6.497 17 O -0.148 6.148 18 C -0.497 4.497 19 H 0.099 0.901 20 C -0.206 4.206 21 N -0.536 5.536 22 Si 0.840 3.160 23 H -0.182 1.182 24 H -0.179 1.179 25 H -0.188 1.188 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.166 0.834 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.511 -1.761 -24.119 25.637 hybrid contribution -0.284 -0.472 0.985 1.128 sum 8.227 -2.233 -23.135 24.655 Atomic orbital electron populations 1.21772 0.95842 1.02251 1.01486 1.21698 0.96240 0.93612 1.04002 1.22888 0.96225 0.94303 0.85042 0.89069 1.22381 0.93823 1.03328 1.03914 1.86121 1.83149 1.16738 1.37877 1.19320 0.93559 0.82972 0.93849 1.21516 1.07888 0.95960 0.98011 1.21558 0.93808 0.93166 0.98850 1.21348 1.02167 1.01627 0.92817 1.21561 0.96050 0.91521 0.99626 1.18396 1.08732 0.93826 0.92802 1.22146 0.88997 0.99345 0.90448 1.21179 1.08179 1.01382 0.91591 1.20577 0.78894 0.86708 0.85809 1.90620 1.57465 1.17006 1.84605 1.83994 1.68491 1.40497 1.21856 1.21517 1.45558 0.91900 0.90734 0.90130 1.26651 0.95074 0.97731 1.01114 1.70063 1.42700 1.10117 1.30703 0.84583 0.79029 0.77356 0.75068 1.18238 1.17942 1.18815 0.91618 0.91628 0.94903 0.86975 0.92075 0.92617 0.91750 0.88231 0.82427 0.81835 0.82847 0.84637 0.86616 0.83405 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.81 71.98 0.71 -2.18 16 2 C -0.12 -1.89 5.64 30.60 0.17 -1.71 16 3 C 0.07 1.20 2.22 30.59 0.07 1.27 16 4 H 0.09 1.21 6.31 -2.39 -0.02 1.20 16 5 C -0.18 -2.40 9.17 71.98 0.66 -1.74 16 6 O -0.32 -8.64 8.52 -90.02 -0.77 -9.40 16 7 C 0.15 3.89 6.62 22.89 0.15 4.04 16 8 C -0.22 -3.90 8.24 22.33 0.18 -3.72 16 9 C -0.06 -0.86 10.03 22.33 0.22 -0.64 16 10 C -0.16 -3.01 10.02 22.24 0.22 -2.79 16 11 C -0.07 -1.80 9.41 22.57 0.21 -1.59 16 12 C -0.14 -4.22 5.88 -20.07 -0.12 -4.34 16 13 C 0.01 0.38 9.17 23.83 0.22 0.60 16 14 C -0.20 -9.14 9.33 22.42 0.21 -8.93 16 15 C 0.43 24.51 7.64 68.67 0.52 25.04 16 16 O -0.60 -36.71 15.36 19.20 0.29 -36.42 16 17 O -0.24 -15.46 9.73 9.88 0.10 -15.36 16 18 C -0.42 -27.36 9.65 67.96 0.66 -26.70 16 19 H 0.08 5.31 6.86 -2.91 -0.02 5.29 16 20 C -0.01 -0.31 5.50 84.90 0.47 0.16 16 21 N -0.90 -55.07 13.67 21.64 0.30 -54.78 16 22 Si 1.02 45.15 29.55 68.60 2.03 47.17 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 0.81 7.82 -2.39 -0.02 0.79 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.87 6.91 -2.39 -0.02 0.86 16 33 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.16 1.92 5.42 -2.91 -0.02 1.90 16 35 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.14 3.46 6.17 -2.91 -0.02 3.45 16 38 H 0.12 4.97 7.03 -2.91 -0.02 4.95 16 39 H 0.15 5.80 6.08 -2.91 -0.02 5.79 16 40 H 0.28 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -81.90 342.37 7.55 -74.35 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.04 Total: 17.66 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 4.56 Total: -23.22 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.30 Total: -54.78 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: -0.38 Total: -61.19 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -81.90 7.55 -74.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729873056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.676 kcal (2) G-P(sol) polarization free energy of solvation -81.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds