Wall clock time and date at job start Tue Mar 31 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47451 * 2 1 4 4 H 1.08997 * 109.46688 * 54.99930 * 3 2 1 5 5 C 1.52997 * 109.47305 * 175.00437 * 3 2 1 6 6 O 1.42902 * 109.46820 * 295.00498 * 3 2 1 7 7 C 1.35678 * 117.00121 * 155.17794 * 6 3 2 8 8 C 1.38603 * 120.16299 * 5.41363 * 7 6 3 9 9 C 1.38131 * 120.11732 * 180.02562 * 8 7 6 10 10 C 1.38590 * 120.44197 * 359.97438 * 9 8 7 11 11 C 1.37732 * 120.32456 * 359.97438 * 10 9 8 12 12 C 1.39977 * 119.87730 * 359.75902 * 11 10 9 13 13 C 1.46871 * 120.21501 * 180.25911 * 12 11 10 14 14 C 1.35190 * 120.00289 * 0.25113 * 13 12 11 15 15 C 1.41660 * 120.00304 * 179.97438 * 14 13 12 16 16 O 1.21705 * 119.99693 * 0.02562 * 15 14 13 17 17 O 1.34911 * 120.00432 * 180.02562 * 15 14 13 18 18 C 1.34820 * 117.00396 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99529 * 0.02562 * 18 17 15 20 20 C 1.38830 * 120.00052 * 179.97438 * 18 17 15 21 21 N 1.31401 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99815 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46965 * 90.00239 * 22 20 18 24 24 H 1.48503 * 109.46960 * 210.00297 * 22 20 18 25 25 H 1.48504 * 109.47055 * 330.00105 * 22 20 18 26 26 H 1.09001 * 109.47420 * 59.99538 * 1 2 3 27 27 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46643 * 299.99884 * 1 2 3 29 29 H 1.09006 * 109.46643 * 240.00116 * 2 1 3 30 30 H 1.09001 * 109.47420 * 120.00462 * 2 1 3 31 31 H 1.09004 * 109.47074 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.46890 * 299.99873 * 5 3 2 33 33 H 1.09005 * 109.47120 * 59.99801 * 5 3 2 34 34 H 1.08000 * 119.94014 * 0.02562 * 8 7 6 35 35 H 1.07998 * 119.77977 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.83821 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.06320 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.99612 * 180.25792 * 13 12 11 39 39 H 1.08003 * 120.00098 * 0.02562 * 14 13 12 40 40 H 0.97006 * 120.00259 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 8 1.6619 2.0814 -1.2210 7 6 1.5559 3.4339 -1.2015 8 6 1.9172 4.1444 -0.0676 9 6 1.8084 5.5213 -0.0485 10 6 1.3390 6.2040 -1.1594 11 6 0.9758 5.5163 -2.2961 12 6 1.0859 4.1213 -2.3322 13 6 0.7061 3.3810 -3.5425 14 6 0.2533 4.0471 -4.6282 15 6 -0.1125 3.3331 -5.7957 16 8 -0.0195 2.1199 -5.8212 17 8 -0.5639 3.9979 -6.8794 18 6 -0.8953 3.2585 -7.9570 19 1 -0.7943 2.1837 -7.9261 20 6 -1.3673 3.8787 -9.1059 21 7 -1.4907 5.1864 -9.1433 22 14 -1.8272 2.8541 -10.5987 23 1 -3.2599 2.4728 -10.5150 24 1 -1.5972 3.6470 -11.8331 25 1 -0.9899 1.6282 -10.6346 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.9283 2.4720 0.1251 32 1 3.8533 0.9569 1.0570 33 1 3.9995 0.9052 -0.7163 34 1 2.2845 3.6206 0.8026 35 1 2.0919 6.0695 0.8378 36 1 1.2574 7.2807 -1.1337 37 1 0.6109 6.0526 -3.1596 38 1 0.7885 2.3043 -3.5650 39 1 0.1712 5.1238 -4.6058 40 1 -1.8202 5.6198 -9.9462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729873057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:25 Heat of formation + Delta-G solvation = -85.841459 kcal Electronic energy + Delta-G solvation = -22210.107713 eV Core-core repulsion = 18762.822204 eV Total energy + Delta-G solvation = -3447.285509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46059 -38.95316 -37.90663 -35.40084 -34.37285 -33.52989 -32.14598 -30.36444 -30.05534 -29.29140 -25.74942 -24.27895 -24.04874 -22.83713 -21.32555 -20.74295 -18.68858 -18.32731 -17.70026 -16.91999 -15.91808 -15.62870 -15.43721 -14.90529 -14.67660 -14.36851 -14.34300 -14.04895 -13.80990 -13.59487 -13.36888 -13.16476 -12.63814 -12.54273 -12.11432 -11.97838 -11.88279 -11.62059 -11.29401 -11.25306 -11.17038 -10.95665 -10.81843 -10.66716 -10.52270 -10.41112 -9.95937 -9.78836 -8.98730 -8.60647 -8.56503 -7.74378 -6.43072 -4.02454 0.75512 1.40263 2.28430 3.05746 3.18041 3.20174 3.26976 3.79035 4.00544 4.28930 4.40554 4.57333 4.61951 4.72633 4.81840 4.92103 5.01435 5.10095 5.18967 5.23405 5.30913 5.33525 5.38622 5.42168 5.57948 5.66690 5.72361 5.76122 5.86017 5.93663 6.00570 6.13139 6.17231 6.28494 6.47691 6.52274 6.73231 6.95763 7.16997 7.39043 7.44199 7.97051 8.79825 9.05805 9.90351 10.74816 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.003410 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.289399 B = 8209.617916 C = 9348.046517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C 0.080 3.920 4 H 0.073 0.927 5 C -0.182 4.182 6 O -0.298 6.298 7 C 0.148 3.852 8 C -0.215 4.215 9 C -0.081 4.081 10 C -0.158 4.158 11 C -0.070 4.070 12 C -0.087 4.087 13 C -0.048 4.048 14 C -0.154 4.154 15 C 0.421 3.579 16 O -0.562 6.562 17 O -0.209 6.209 18 C -0.369 4.369 19 H 0.098 0.902 20 C 0.039 3.961 21 N -0.859 5.859 22 Si 0.945 3.055 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.265 1.265 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 -2.165 21.319 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.023 3.977 4 H 0.091 0.909 5 C -0.239 4.239 6 O -0.211 6.211 7 C 0.102 3.898 8 C -0.234 4.234 9 C -0.099 4.099 10 C -0.176 4.176 11 C -0.088 4.088 12 C -0.087 4.087 13 C -0.067 4.067 14 C -0.173 4.173 15 C 0.272 3.728 16 O -0.463 6.463 17 O -0.116 6.116 18 C -0.446 4.446 19 H 0.115 0.885 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.769 3.231 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.190 1.190 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.222 -2.430 20.966 22.308 hybrid contribution -0.122 -0.253 -0.471 0.548 sum 7.100 -2.683 20.495 21.855 Atomic orbital electron populations 1.21775 0.94952 1.02030 1.02550 1.21635 0.97050 0.93745 1.03216 1.22539 0.94989 0.94157 0.85975 0.90921 1.22396 0.95295 1.03180 1.03013 1.86130 1.83117 1.16486 1.35343 1.19121 0.94524 0.82589 0.93584 1.21164 1.08555 0.95355 0.98318 1.20988 0.97342 0.93412 0.98156 1.20974 1.02954 1.00095 0.93627 1.21410 0.96583 0.92335 0.98484 1.18434 1.04526 0.92775 0.92988 1.22024 0.94432 1.00206 0.90057 1.21369 1.02842 1.00512 0.92551 1.19603 0.81101 0.86709 0.85360 1.90677 1.55978 1.15448 1.84189 1.83978 1.67219 1.39855 1.20554 1.21330 1.42359 0.92199 0.88664 0.88479 1.25404 0.96431 0.96200 0.98549 1.69980 1.42113 1.08333 1.29080 0.85650 0.79176 0.79145 0.79126 1.19807 1.20272 1.18979 0.91508 0.92382 0.93002 0.90491 0.90212 0.91758 0.91105 0.91177 0.85367 0.86015 0.85734 0.84462 0.84542 0.85575 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.81 37.16 0.36 -1.13 16 2 C -0.12 -1.04 5.64 -26.73 -0.15 -1.19 16 3 C 0.08 0.77 2.22 -26.73 -0.06 0.71 16 4 H 0.07 0.62 6.32 -51.93 -0.33 0.29 16 5 C -0.18 -1.49 9.17 37.16 0.34 -1.15 16 6 O -0.30 -4.03 8.52 -18.74 -0.16 -4.19 16 7 C 0.15 2.04 6.62 -38.62 -0.26 1.78 16 8 C -0.22 -2.39 8.23 -39.49 -0.32 -2.71 16 9 C -0.08 -0.83 10.03 -39.49 -0.40 -1.23 16 10 C -0.16 -1.78 10.02 -39.64 -0.40 -2.17 16 11 C -0.07 -0.95 9.41 -39.12 -0.37 -1.32 16 12 C -0.09 -1.34 5.88 -104.93 -0.62 -1.96 16 13 C -0.05 -0.89 9.17 -37.18 -0.34 -1.24 16 14 C -0.15 -3.22 9.33 -39.36 -0.37 -3.58 16 15 C 0.42 11.23 7.64 32.04 0.24 11.47 16 16 O -0.56 -16.12 15.36 -19.43 -0.30 -16.42 16 17 O -0.21 -6.27 9.73 -22.03 -0.21 -6.48 16 18 C -0.37 -11.26 9.65 30.95 0.30 -10.96 16 19 H 0.10 2.97 6.86 -52.49 -0.36 2.61 16 20 C 0.04 1.11 5.50 -17.52 -0.10 1.01 16 21 N -0.86 -25.46 13.67 55.49 0.76 -24.70 16 22 Si 0.94 21.56 29.55 -169.99 -5.02 16.54 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.54 6.90 -51.93 -0.36 0.19 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.13 1.12 5.42 -52.49 -0.28 0.84 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.77 6.17 -52.49 -0.32 1.45 16 38 H 0.14 2.73 7.03 -52.48 -0.37 2.36 16 39 H 0.13 2.33 6.08 -52.48 -0.32 2.01 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -34.47 342.35 -7.17 -41.64 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.27 Total: 2.12 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -2.12 Total: -13.67 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.76 Total: -24.70 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.67 Total: -27.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.47 -7.17 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729873057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.199 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds