Wall clock time and date at job start Tue Mar 31 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47451 * 2 1 4 4 H 1.08997 * 109.46688 * 54.99930 * 3 2 1 5 5 C 1.52997 * 109.47305 * 175.00437 * 3 2 1 6 6 O 1.42902 * 109.46820 * 295.00498 * 3 2 1 7 7 C 1.35678 * 117.00121 * 155.17794 * 6 3 2 8 8 C 1.38603 * 120.16299 * 5.41363 * 7 6 3 9 9 C 1.38131 * 120.11732 * 180.02562 * 8 7 6 10 10 C 1.38590 * 120.44197 * 359.97438 * 9 8 7 11 11 C 1.37732 * 120.32456 * 359.97438 * 10 9 8 12 12 C 1.39977 * 119.87730 * 359.75902 * 11 10 9 13 13 C 1.46871 * 120.21501 * 180.25911 * 12 11 10 14 14 C 1.35190 * 120.00289 * 0.25113 * 13 12 11 15 15 C 1.41660 * 120.00304 * 179.97438 * 14 13 12 16 16 O 1.21705 * 119.99693 * 0.02562 * 15 14 13 17 17 O 1.34911 * 120.00432 * 180.02562 * 15 14 13 18 18 C 1.34820 * 117.00396 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99529 * 0.02562 * 18 17 15 20 20 C 1.38830 * 120.00052 * 179.97438 * 18 17 15 21 21 N 1.31401 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99815 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46965 * 90.00239 * 22 20 18 24 24 H 1.48503 * 109.46960 * 210.00297 * 22 20 18 25 25 H 1.48504 * 109.47055 * 330.00105 * 22 20 18 26 26 H 1.09001 * 109.47420 * 59.99538 * 1 2 3 27 27 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46643 * 299.99884 * 1 2 3 29 29 H 1.09006 * 109.46643 * 240.00116 * 2 1 3 30 30 H 1.09001 * 109.47420 * 120.00462 * 2 1 3 31 31 H 1.09004 * 109.47074 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.46890 * 299.99873 * 5 3 2 33 33 H 1.09005 * 109.47120 * 59.99801 * 5 3 2 34 34 H 1.08000 * 119.94014 * 0.02562 * 8 7 6 35 35 H 1.07998 * 119.77977 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.83821 * 179.97438 * 10 9 8 37 37 H 1.07998 * 120.06320 * 180.02562 * 11 10 9 38 38 H 1.08003 * 119.99612 * 180.25792 * 13 12 11 39 39 H 1.08003 * 120.00098 * 0.02562 * 14 13 12 40 40 H 0.97006 * 120.00259 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 8 1.6619 2.0814 -1.2210 7 6 1.5559 3.4339 -1.2015 8 6 1.9172 4.1444 -0.0676 9 6 1.8084 5.5213 -0.0485 10 6 1.3390 6.2040 -1.1594 11 6 0.9758 5.5163 -2.2961 12 6 1.0859 4.1213 -2.3322 13 6 0.7061 3.3810 -3.5425 14 6 0.2533 4.0471 -4.6282 15 6 -0.1125 3.3331 -5.7957 16 8 -0.0195 2.1199 -5.8212 17 8 -0.5639 3.9979 -6.8794 18 6 -0.8953 3.2585 -7.9570 19 1 -0.7943 2.1837 -7.9261 20 6 -1.3673 3.8787 -9.1059 21 7 -1.4907 5.1864 -9.1433 22 14 -1.8272 2.8541 -10.5987 23 1 -3.2599 2.4728 -10.5150 24 1 -1.5972 3.6470 -11.8331 25 1 -0.9899 1.6282 -10.6346 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.9283 2.4720 0.1251 32 1 3.8533 0.9569 1.0570 33 1 3.9995 0.9052 -0.7163 34 1 2.2845 3.6206 0.8026 35 1 2.0919 6.0695 0.8378 36 1 1.2574 7.2807 -1.1337 37 1 0.6109 6.0526 -3.1596 38 1 0.7885 2.3043 -3.5650 39 1 0.1712 5.1238 -4.6058 40 1 -1.8202 5.6198 -9.9462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729873057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:25 Heat of formation + Delta-G solvation = -106.042853 kcal Electronic energy + Delta-G solvation = -22210.983711 eV Core-core repulsion = 18762.822204 eV Total energy + Delta-G solvation = -3448.161507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47854 -41.02372 -38.90862 -37.47469 -35.27171 -34.95185 -34.33830 -31.31707 -30.96168 -30.47344 -27.77429 -25.57232 -25.03163 -23.89433 -22.63599 -21.67770 -20.28326 -19.96155 -19.37165 -18.60375 -17.26294 -16.72414 -16.57623 -16.50462 -16.27779 -16.12455 -15.78403 -14.98848 -14.82539 -14.64178 -14.44874 -14.38430 -13.97917 -13.64463 -13.42731 -13.25906 -13.17813 -12.87316 -12.68320 -12.44459 -12.30883 -12.17835 -12.05577 -12.03387 -11.94799 -11.60853 -11.49686 -11.36503 -11.17055 -10.72836 -9.64700 -8.95112 -8.58292 -6.34141 -0.56099 0.44637 0.88935 1.32661 1.41284 1.51190 2.13503 2.17709 2.22654 2.85375 2.90432 3.00780 3.66734 3.78187 3.79628 3.91804 4.00617 4.08544 4.20026 4.29587 4.37587 4.42573 4.50675 4.60782 4.64558 4.70588 4.81359 4.91478 4.94628 5.00643 5.03457 5.10581 5.17161 5.23309 5.28602 5.37101 5.49578 5.52000 5.59494 5.79751 5.83319 6.46583 6.62608 6.85936 7.72822 8.62887 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.003410 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.289399 B = 8209.617916 C = 9348.046517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.071 3.929 4 H 0.092 0.908 5 C -0.177 4.177 6 O -0.325 6.325 7 C 0.149 3.851 8 C -0.216 4.216 9 C -0.056 4.056 10 C -0.162 4.162 11 C -0.070 4.070 12 C -0.137 4.137 13 C 0.010 3.990 14 C -0.205 4.205 15 C 0.427 3.573 16 O -0.595 6.595 17 O -0.240 6.240 18 C -0.421 4.421 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.899 5.899 22 Si 1.022 2.978 23 H -0.258 1.258 24 H -0.256 1.256 25 H -0.264 1.264 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.148 0.852 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.363 -1.530 24.520 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.015 3.985 4 H 0.109 0.891 5 C -0.235 4.235 6 O -0.239 6.239 7 C 0.103 3.897 8 C -0.234 4.234 9 C -0.074 4.074 10 C -0.180 4.180 11 C -0.088 4.088 12 C -0.138 4.138 13 C -0.009 4.009 14 C -0.223 4.223 15 C 0.280 3.720 16 O -0.497 6.497 17 O -0.148 6.148 18 C -0.497 4.497 19 H 0.099 0.901 20 C -0.206 4.206 21 N -0.536 5.536 22 Si 0.840 3.160 23 H -0.182 1.182 24 H -0.179 1.179 25 H -0.188 1.188 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.166 0.834 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.288 -1.784 24.202 25.644 hybrid contribution -0.286 -0.473 -0.983 1.128 sum 8.002 -2.257 23.218 24.662 Atomic orbital electron populations 1.21772 0.95829 1.02255 1.01492 1.21697 0.96253 0.93603 1.04001 1.22886 0.96215 0.94308 0.85044 0.89061 1.22384 0.93834 1.03327 1.03915 1.86121 1.83131 1.16714 1.37913 1.19322 0.93611 0.82961 0.93801 1.21517 1.07842 0.95956 0.98066 1.21556 0.93815 0.93164 0.98843 1.21346 1.02160 1.01619 0.92840 1.21562 0.96019 0.91533 0.99639 1.18397 1.08950 0.93835 0.92582 1.22144 0.88964 0.99343 0.90481 1.21176 1.08314 1.01390 0.91451 1.20577 0.78852 0.86700 0.85859 1.90623 1.57249 1.16994 1.84839 1.83994 1.68912 1.40487 1.21443 1.21515 1.46027 0.91906 0.90262 0.90129 1.26648 0.95035 0.97713 1.01164 1.70059 1.42787 1.10071 1.30667 0.84586 0.79332 0.77335 0.74796 1.18227 1.17944 1.18820 0.94885 0.91623 0.91623 0.92082 0.86976 0.91752 0.88220 0.92631 0.82427 0.81836 0.82849 0.84637 0.86618 0.83405 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.81 71.98 0.71 -2.17 16 2 C -0.12 -1.88 5.64 30.59 0.17 -1.71 16 3 C 0.07 1.20 2.22 30.59 0.07 1.27 16 4 H 0.09 1.21 6.32 -2.39 -0.02 1.19 16 5 C -0.18 -2.40 9.17 71.98 0.66 -1.74 16 6 O -0.32 -8.63 8.52 -89.96 -0.77 -9.40 16 7 C 0.15 3.89 6.62 22.89 0.15 4.04 16 8 C -0.22 -3.90 8.23 22.33 0.18 -3.72 16 9 C -0.06 -0.86 10.03 22.33 0.22 -0.64 16 10 C -0.16 -3.01 10.02 22.23 0.22 -2.79 16 11 C -0.07 -1.80 9.41 22.57 0.21 -1.59 16 12 C -0.14 -4.22 5.88 -20.06 -0.12 -4.34 16 13 C 0.01 0.39 9.17 23.83 0.22 0.60 16 14 C -0.20 -9.14 9.33 22.41 0.21 -8.93 16 15 C 0.43 24.51 7.64 68.67 0.52 25.04 16 16 O -0.60 -36.72 15.36 19.17 0.29 -36.43 16 17 O -0.24 -15.46 9.73 9.85 0.10 -15.36 16 18 C -0.42 -27.36 9.65 67.96 0.66 -26.70 16 19 H 0.08 5.31 6.86 -2.91 -0.02 5.29 16 20 C -0.01 -0.30 5.50 84.90 0.47 0.16 16 21 N -0.90 -55.07 13.67 21.64 0.30 -54.77 16 22 Si 1.02 45.14 29.55 68.60 2.03 47.17 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 26 H 0.03 0.81 7.82 -2.39 -0.02 0.80 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 0.87 6.90 -2.38 -0.02 0.86 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.16 1.92 5.42 -2.91 -0.02 1.90 16 35 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.14 3.46 6.17 -2.91 -0.02 3.45 16 38 H 0.12 4.97 7.03 -2.91 -0.02 4.95 16 39 H 0.15 5.80 6.08 -2.91 -0.02 5.79 16 40 H 0.28 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -81.90 342.35 7.55 -74.35 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.05 Total: 17.66 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 4.56 Total: -23.21 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.30 Total: -54.77 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: -0.38 Total: -61.19 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -81.90 7.55 -74.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729873057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.694 kcal (2) G-P(sol) polarization free energy of solvation -81.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds