Wall clock time and date at job start Tue Mar 31 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47396 * 2 1 4 4 H 1.09004 * 109.46959 * 54.99825 * 3 2 1 5 5 C 1.52995 * 109.47312 * 175.00362 * 3 2 1 6 6 O 1.42904 * 109.46894 * 295.00315 * 3 2 1 7 7 C 1.35684 * 116.99770 * 155.05797 * 6 3 2 8 8 C 1.38601 * 120.16493 * 5.69571 * 7 6 3 9 9 C 1.38129 * 120.11398 * 179.72059 * 8 7 6 10 10 C 1.38580 * 120.44716 * 0.23206 * 9 8 7 11 11 C 1.37742 * 120.31950 * 359.97438 * 10 9 8 12 12 C 1.39964 * 119.88014 * 0.02562 * 11 10 9 13 13 C 1.46873 * 120.21743 * 180.02562 * 12 11 10 14 14 C 1.35202 * 119.99921 * 45.44505 * 13 12 11 15 15 C 1.41661 * 119.99750 * 10.57872 * 14 13 12 16 16 O 1.21694 * 120.00354 * 6.84603 * 15 14 13 17 17 O 1.34921 * 119.99576 * 186.84173 * 15 14 13 18 18 C 1.34813 * 116.99515 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00437 * 359.97438 * 18 17 15 20 20 C 1.38832 * 119.99885 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00677 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00080 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47027 * 90.00162 * 22 20 18 24 24 H 1.48494 * 109.47463 * 210.00515 * 22 20 18 25 25 H 1.48503 * 109.47193 * 330.00682 * 22 20 18 26 26 H 1.09005 * 109.47149 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46980 * 299.99739 * 1 2 3 28 28 H 1.08998 * 109.47308 * 59.99703 * 1 2 3 29 29 H 1.09004 * 109.46980 * 240.00261 * 2 1 3 30 30 H 1.08998 * 109.47308 * 120.00297 * 2 1 3 31 31 H 1.09000 * 109.46737 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47034 * 299.99390 * 5 3 2 33 33 H 1.08991 * 109.47645 * 60.00041 * 5 3 2 34 34 H 1.08001 * 119.94254 * 359.97438 * 8 7 6 35 35 H 1.08000 * 119.77893 * 180.25558 * 9 8 7 36 36 H 1.07994 * 119.84365 * 180.02562 * 10 9 8 37 37 H 1.08003 * 120.05994 * 180.02562 * 11 10 9 38 38 H 1.07996 * 120.00191 * 225.44460 * 13 12 11 39 39 H 1.07997 * 119.99883 * 190.58050 * 14 13 12 40 40 H 0.96995 * 120.01073 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4443 0.1256 6 8 1.6619 2.0814 -1.2211 7 6 1.5535 3.4338 -1.2008 8 6 1.9179 4.1447 -0.0682 9 6 1.8125 5.5219 -0.0507 10 6 1.3384 6.2041 -1.1599 11 6 0.9671 5.5153 -2.2935 12 6 1.0684 4.1197 -2.3260 13 6 0.6751 3.3780 -3.5311 14 6 1.0758 3.8061 -4.7493 15 6 2.0509 4.8282 -4.8554 16 8 2.6183 5.2337 -3.8581 17 8 2.3506 5.3520 -6.0621 18 6 3.2876 6.3207 -6.0931 19 1 3.7607 6.6440 -5.1777 20 6 3.6437 6.9036 -7.3018 21 7 4.5573 7.8475 -7.3323 22 14 2.8249 6.3451 -8.8852 23 1 1.6117 7.1655 -9.1313 24 1 3.7718 6.5099 -10.0171 25 1 2.4399 4.9158 -8.7660 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.9280 2.4720 0.1261 32 1 3.8532 0.9571 1.0570 33 1 3.9994 0.9054 -0.7161 34 1 2.2888 3.6214 0.8007 35 1 2.1019 6.0708 0.8332 36 1 1.2604 7.2809 -1.1357 37 1 0.5986 6.0513 -3.1557 38 1 0.0658 2.4905 -3.4442 39 1 0.6525 3.3689 -5.6415 40 1 4.8064 8.2545 -8.1767 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729873058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:27 Heat of formation + Delta-G solvation = -68.372367 kcal Electronic energy + Delta-G solvation = -23036.404771 eV Core-core repulsion = 19589.876779 eV Total energy + Delta-G solvation = -3446.527993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25551 -39.22313 -37.54976 -35.56560 -34.24396 -33.13248 -32.31562 -30.29670 -29.76225 -29.07223 -25.87644 -24.13474 -23.66232 -22.55685 -21.38044 -20.51540 -18.74956 -18.08098 -17.86861 -16.90847 -15.85572 -15.35506 -15.18070 -14.88920 -14.72004 -14.40182 -13.97248 -13.83549 -13.75091 -13.49651 -13.16753 -12.92857 -12.53579 -12.33238 -12.19102 -11.95804 -11.93839 -11.66939 -11.33134 -11.25360 -11.11955 -10.96564 -10.66420 -10.48174 -10.42519 -10.31018 -9.69075 -9.59145 -8.99693 -8.67166 -7.93973 -7.53361 -6.38750 -4.06328 1.11759 1.89285 2.22599 3.22153 3.25604 3.29070 3.39381 4.08083 4.20263 4.24739 4.51506 4.54573 4.73932 4.85039 5.02237 5.10022 5.15773 5.16620 5.30299 5.37910 5.40146 5.45873 5.64361 5.68243 5.71023 5.75054 5.81539 5.91942 6.03357 6.08843 6.12708 6.16461 6.35139 6.44284 6.72436 6.74278 6.90933 7.06307 7.16546 7.70013 7.79649 8.04379 8.71746 9.01596 9.75824 10.69318 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.004054 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.341712 B = 6904.811504 C = 7375.539107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.071 0.929 5 C -0.182 4.182 6 O -0.305 6.305 7 C 0.144 3.856 8 C -0.227 4.227 9 C -0.075 4.075 10 C -0.167 4.167 11 C 0.005 3.995 12 C -0.090 4.090 13 C -0.032 4.032 14 C -0.172 4.172 15 C 0.427 3.573 16 O -0.528 6.528 17 O -0.249 6.249 18 C -0.367 4.367 19 H 0.110 0.890 20 C 0.062 3.938 21 N -0.870 5.870 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.808 -12.756 14.463 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C 0.025 3.975 4 H 0.089 0.911 5 C -0.239 4.239 6 O -0.219 6.219 7 C 0.099 3.901 8 C -0.245 4.245 9 C -0.093 4.093 10 C -0.186 4.186 11 C -0.013 4.013 12 C -0.091 4.091 13 C -0.051 4.051 14 C -0.191 4.191 15 C 0.277 3.723 16 O -0.426 6.426 17 O -0.157 6.157 18 C -0.442 4.442 19 H 0.128 0.872 20 C -0.142 4.142 21 N -0.509 5.509 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.183 1.183 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.551 -12.635 14.393 20.974 hybrid contribution 0.129 0.026 -0.660 0.673 sum -8.422 -12.609 13.732 20.457 Atomic orbital electron populations 1.21756 0.95191 1.01656 1.02443 1.21623 0.96776 0.94153 1.03036 1.22444 0.94982 0.93705 0.86356 0.91060 1.22383 0.95439 1.03473 1.02614 1.86035 1.83734 1.17061 1.35061 1.18946 0.95713 0.81872 0.93600 1.20966 1.09962 0.95294 0.98308 1.20866 0.97048 0.93391 0.98015 1.20823 1.04125 0.99715 0.93887 1.20958 0.92791 0.91579 0.95971 1.18147 1.05682 0.92905 0.92368 1.22017 0.96092 0.96356 0.90639 1.21418 0.99601 0.99815 0.98254 1.19545 0.85672 0.84595 0.82482 1.90789 1.53482 1.61781 1.36515 1.83642 1.52233 1.47686 1.32178 1.20718 1.14679 1.11257 0.97576 0.87214 1.24608 0.95805 0.95163 0.98614 1.69591 1.29176 1.24072 1.28054 0.86200 0.79153 0.80452 0.81087 1.19824 1.20779 1.18325 0.92617 0.92930 0.91795 0.90757 0.90342 0.91520 0.91379 0.91391 0.86015 0.86583 0.86345 0.86098 0.85023 0.85168 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.15 0.36 -0.92 16 2 C -0.12 -1.03 5.64 -26.73 -0.15 -1.18 16 3 C 0.08 0.89 2.22 -26.73 -0.06 0.83 16 4 H 0.07 0.72 6.33 -51.93 -0.33 0.39 16 5 C -0.18 -1.91 9.17 37.15 0.34 -1.57 16 6 O -0.30 -4.45 8.79 -18.75 -0.16 -4.62 16 7 C 0.14 2.36 6.62 -38.62 -0.26 2.10 16 8 C -0.23 -3.36 8.23 -39.49 -0.33 -3.68 16 9 C -0.07 -1.12 10.03 -39.50 -0.40 -1.52 16 10 C -0.17 -2.81 10.02 -39.64 -0.40 -3.21 16 11 C 0.01 0.10 6.66 -39.12 -0.26 -0.16 16 12 C -0.09 -1.63 4.45 -104.93 -0.47 -2.09 16 13 C -0.03 -0.53 9.35 -37.17 -0.35 -0.88 16 14 C -0.17 -3.23 9.86 -39.36 -0.39 -3.62 16 15 C 0.43 10.39 6.77 32.04 0.22 10.60 16 16 O -0.53 -13.90 11.31 -19.42 -0.22 -14.12 16 17 O -0.25 -6.74 8.56 -22.04 -0.19 -6.93 16 18 C -0.37 -11.01 10.11 30.95 0.31 -10.70 16 19 H 0.11 3.62 7.09 -52.49 -0.37 3.25 16 20 C 0.06 1.79 5.50 -17.51 -0.10 1.70 16 21 N -0.87 -25.89 13.96 55.49 0.77 -25.11 16 22 Si 0.91 21.67 28.62 -169.99 -4.86 16.80 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.62 7.82 -51.93 -0.41 0.22 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.80 6.89 -51.93 -0.36 0.44 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.12 1.48 5.42 -52.49 -0.28 1.20 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 2.35 7.17 -52.48 -0.38 1.97 16 38 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 40 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -33.15 337.11 -6.98 -40.13 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.49 Total: 3.07 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -1.91 Total: -14.30 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.77 Total: -25.11 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.57 Total: -25.66 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.15 -6.98 -40.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729873058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.243 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds