Wall clock time and date at job start Tue Mar 31 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46917 * 2 1 4 4 H 1.08997 * 109.46947 * 304.99892 * 3 2 1 5 5 C 1.53005 * 109.46893 * 185.00372 * 3 2 1 6 6 O 1.42899 * 109.47457 * 65.00339 * 3 2 1 7 7 C 1.35681 * 117.00213 * 211.60043 * 6 3 2 8 8 C 1.38598 * 120.15717 * 352.50524 * 7 6 3 9 9 C 1.38144 * 120.10994 * 180.25609 * 8 7 6 10 10 C 1.38584 * 120.44040 * 359.44958 * 9 8 7 11 11 C 1.37742 * 120.32638 * 0.55231 * 10 9 8 12 12 C 1.39967 * 119.87332 * 359.72867 * 11 10 9 13 13 C 1.46870 * 120.21472 * 179.97438 * 12 11 10 14 14 C 1.35199 * 120.00091 * 46.70184 * 13 12 11 15 15 C 1.41661 * 119.99918 * 12.35933 * 14 13 12 16 16 O 1.21695 * 120.00069 * 7.26911 * 15 14 13 17 17 O 1.34917 * 120.00235 * 187.27340 * 15 14 13 18 18 C 1.34811 * 117.00089 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00468 * 359.97438 * 18 17 15 20 20 C 1.38837 * 119.99744 * 179.97438 * 18 17 15 21 21 N 1.31401 * 120.00684 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47225 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47094 * 119.99978 * 22 20 18 25 25 H 1.48498 * 109.47515 * 240.00150 * 22 20 18 26 26 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47145 * 299.99920 * 1 2 3 28 28 H 1.09002 * 109.47777 * 59.99878 * 1 2 3 29 29 H 1.08996 * 109.47074 * 240.00225 * 2 1 3 30 30 H 1.09003 * 109.47520 * 119.99636 * 2 1 3 31 31 H 1.09007 * 109.46813 * 299.99587 * 5 3 2 32 32 H 1.09000 * 109.47143 * 59.99393 * 5 3 2 33 33 H 1.09000 * 109.46923 * 180.02562 * 5 3 2 34 34 H 1.07995 * 119.95030 * 359.97438 * 8 7 6 35 35 H 1.07995 * 119.77464 * 179.72424 * 9 8 7 36 36 H 1.08001 * 119.83377 * 180.29951 * 10 9 8 37 37 H 1.07994 * 120.06287 * 179.69809 * 11 10 9 38 38 H 1.08000 * 120.00582 * 226.70011 * 13 12 11 39 39 H 1.08005 * 120.00443 * 192.36075 * 14 13 12 40 40 H 0.96999 * 120.00862 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 1.6619 2.0815 1.2210 7 6 1.4180 3.4152 1.1686 8 6 1.6871 4.1272 0.0104 9 6 1.4433 5.4860 -0.0402 10 6 0.9184 6.1466 1.0592 11 6 0.6443 5.4567 2.2195 12 6 0.8915 4.0807 2.2874 13 6 0.6025 3.3379 3.5210 14 6 -0.5767 3.5172 4.1576 15 6 -1.6316 4.2088 3.5130 16 8 -1.5261 4.5253 2.3427 17 8 -2.7534 4.5167 4.1965 18 6 -3.7183 5.1757 3.5241 19 1 -3.5730 5.4335 2.4855 20 6 -4.8988 5.5230 4.1670 21 7 -5.0755 5.2099 5.4309 22 14 -6.2356 6.4368 3.2356 23 1 -5.7939 6.6694 1.8371 24 1 -7.4798 5.6259 3.2329 25 1 -6.4962 7.7410 3.8962 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9994 0.9054 0.7161 32 1 3.8531 0.9570 -1.0572 33 1 3.9281 2.4720 -0.1254 34 1 2.0923 3.6198 -0.8526 35 1 1.6592 6.0363 -0.9440 36 1 0.7271 7.2082 1.0073 37 1 0.2398 5.9766 3.0753 38 1 1.3318 2.6483 3.9197 39 1 -0.7145 3.1332 5.1577 40 1 -5.9002 5.4528 5.8801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729873059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:30 Heat of formation + Delta-G solvation = -72.354551 kcal Electronic energy + Delta-G solvation = -23108.272510 eV Core-core repulsion = 19661.571837 eV Total energy + Delta-G solvation = -3446.700673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.18346 -39.02394 -37.47829 -35.38366 -34.15887 -33.02952 -32.14444 -30.20488 -29.76124 -28.99100 -25.69580 -24.08974 -23.72484 -22.52624 -21.42718 -20.44644 -18.74083 -18.03833 -17.68843 -16.71774 -15.74971 -15.27214 -15.18734 -14.75264 -14.52788 -14.33161 -14.09544 -13.86008 -13.66171 -13.41734 -13.06116 -12.90350 -12.74828 -12.22761 -12.06154 -11.81465 -11.65241 -11.53343 -11.23269 -11.19210 -11.05384 -10.92208 -10.60104 -10.41614 -10.40687 -10.35103 -9.76585 -9.46374 -8.86806 -8.57065 -7.95915 -7.47772 -6.42611 -4.02098 1.21220 1.90401 2.27496 3.15545 3.19586 3.27291 3.33346 4.01682 4.19133 4.26896 4.57205 4.79934 4.90260 4.91535 5.07869 5.17513 5.19249 5.21475 5.34714 5.41429 5.45289 5.48849 5.67978 5.73345 5.79790 5.87554 5.91335 5.96237 6.04029 6.14045 6.28782 6.33143 6.44999 6.51085 6.78722 6.82885 6.97408 7.15374 7.24822 7.44611 7.74125 7.98045 8.83208 9.06718 9.93489 10.75382 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.004226 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.972316 B = 6624.335795 C = 7029.083619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.074 0.926 5 C -0.175 4.175 6 O -0.304 6.304 7 C 0.140 3.860 8 C -0.223 4.223 9 C -0.080 4.080 10 C -0.164 4.164 11 C -0.006 4.006 12 C -0.076 4.076 13 C -0.044 4.044 14 C -0.161 4.161 15 C 0.415 3.585 16 O -0.544 6.544 17 O -0.212 6.212 18 C -0.366 4.366 19 H 0.097 0.903 20 C 0.038 3.962 21 N -0.859 5.859 22 Si 0.941 3.059 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.104 -5.882 -9.270 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.092 0.908 5 C -0.233 4.233 6 O -0.218 6.218 7 C 0.095 3.905 8 C -0.242 4.242 9 C -0.099 4.099 10 C -0.182 4.182 11 C -0.024 4.024 12 C -0.076 4.076 13 C -0.064 4.064 14 C -0.180 4.180 15 C 0.265 3.735 16 O -0.444 6.444 17 O -0.119 6.119 18 C -0.443 4.443 19 H 0.115 0.885 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.201 1.201 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.918 -5.910 -9.219 18.506 hybrid contribution -0.804 0.433 -0.580 1.082 sum 14.114 -5.477 -9.799 18.034 Atomic orbital electron populations 1.21763 0.94882 1.01716 1.02917 1.21641 0.97059 0.94136 1.02730 1.22488 0.94700 0.93922 0.86701 0.90787 1.22317 0.95437 1.02945 1.02555 1.86027 1.82985 1.18935 1.33890 1.18965 0.95220 0.82359 0.93953 1.20953 1.09927 0.95527 0.97756 1.20836 0.97598 0.93590 0.97832 1.20808 1.03683 0.99970 0.93766 1.20963 0.91489 0.92050 0.97924 1.18152 1.03078 0.93284 0.93129 1.21985 0.95899 0.95615 0.92855 1.21486 0.92848 1.02958 1.00709 1.19762 0.84657 0.82649 0.86424 1.90753 1.81173 1.54870 1.17564 1.83993 1.23530 1.62270 1.42104 1.21331 0.93468 1.32820 0.96656 0.88516 1.25383 0.97767 0.97496 0.95953 1.69984 1.26330 1.43592 1.09701 0.85631 0.79577 0.78731 0.79468 1.18896 1.20166 1.20143 0.92605 0.91522 0.92886 0.90512 0.90914 0.91546 0.91349 0.91893 0.86091 0.86664 0.86451 0.86142 0.85133 0.85176 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.81 37.15 0.36 -1.47 16 2 C -0.12 -1.19 5.64 -26.73 -0.15 -1.34 16 3 C 0.08 0.90 2.19 -26.73 -0.06 0.84 16 4 H 0.07 0.86 5.99 -51.93 -0.31 0.54 16 5 C -0.18 -1.60 9.34 37.16 0.35 -1.25 16 6 O -0.30 -4.60 8.77 -18.75 -0.16 -4.76 16 7 C 0.14 2.35 6.68 -38.62 -0.26 2.10 16 8 C -0.22 -3.35 8.56 -39.48 -0.34 -3.69 16 9 C -0.08 -1.20 10.03 -39.49 -0.40 -1.60 16 10 C -0.16 -2.75 10.02 -39.64 -0.40 -3.14 16 11 C -0.01 -0.11 6.82 -39.12 -0.27 -0.38 16 12 C -0.08 -1.40 4.33 -104.93 -0.45 -1.86 16 13 C -0.04 -0.79 9.33 -37.17 -0.35 -1.13 16 14 C -0.16 -3.25 9.84 -39.36 -0.39 -3.63 16 15 C 0.41 10.54 6.81 32.04 0.22 10.76 16 16 O -0.54 -14.47 11.64 -19.42 -0.23 -14.70 16 17 O -0.21 -6.20 9.73 -22.02 -0.21 -6.41 16 18 C -0.37 -10.94 9.65 30.95 0.30 -10.64 16 19 H 0.10 2.91 6.86 -52.49 -0.36 2.55 16 20 C 0.04 1.09 5.50 -17.51 -0.10 0.99 16 21 N -0.86 -25.37 13.67 55.49 0.76 -24.61 16 22 Si 0.94 21.45 29.55 -169.99 -5.02 16.42 16 23 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.60 7.54 -51.93 -0.39 0.21 16 34 H 0.12 1.49 5.65 -52.49 -0.30 1.20 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.12 2.37 7.39 -52.49 -0.39 1.98 16 38 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -33.46 339.86 -7.18 -40.64 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.52 Total: 3.75 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.92 Total: -15.45 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 0.76 Total: -24.61 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.60 Total: -25.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.46 -7.18 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729873059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.714 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds