Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46917 * 2 1 4 4 H 1.08997 * 109.46947 * 304.99892 * 3 2 1 5 5 C 1.53005 * 109.46893 * 185.00372 * 3 2 1 6 6 O 1.42899 * 109.47457 * 65.00339 * 3 2 1 7 7 C 1.35681 * 117.00213 * 211.60043 * 6 3 2 8 8 C 1.38598 * 120.15717 * 352.50524 * 7 6 3 9 9 C 1.38144 * 120.10994 * 180.25609 * 8 7 6 10 10 C 1.38584 * 120.44040 * 359.44958 * 9 8 7 11 11 C 1.37742 * 120.32638 * 0.55231 * 10 9 8 12 12 C 1.39967 * 119.87332 * 359.72867 * 11 10 9 13 13 C 1.46870 * 120.21472 * 179.97438 * 12 11 10 14 14 C 1.35199 * 120.00091 * 46.70184 * 13 12 11 15 15 C 1.41661 * 119.99918 * 12.35933 * 14 13 12 16 16 O 1.21695 * 120.00069 * 7.26911 * 15 14 13 17 17 O 1.34917 * 120.00235 * 187.27340 * 15 14 13 18 18 C 1.34811 * 117.00089 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00468 * 359.97438 * 18 17 15 20 20 C 1.38837 * 119.99744 * 179.97438 * 18 17 15 21 21 N 1.31401 * 120.00684 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47225 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47094 * 119.99978 * 22 20 18 25 25 H 1.48498 * 109.47515 * 240.00150 * 22 20 18 26 26 H 1.09001 * 109.47121 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47145 * 299.99920 * 1 2 3 28 28 H 1.09002 * 109.47777 * 59.99878 * 1 2 3 29 29 H 1.08996 * 109.47074 * 240.00225 * 2 1 3 30 30 H 1.09003 * 109.47520 * 119.99636 * 2 1 3 31 31 H 1.09007 * 109.46813 * 299.99587 * 5 3 2 32 32 H 1.09000 * 109.47143 * 59.99393 * 5 3 2 33 33 H 1.09000 * 109.46923 * 180.02562 * 5 3 2 34 34 H 1.07995 * 119.95030 * 359.97438 * 8 7 6 35 35 H 1.07995 * 119.77464 * 179.72424 * 9 8 7 36 36 H 1.08001 * 119.83377 * 180.29951 * 10 9 8 37 37 H 1.07994 * 120.06287 * 179.69809 * 11 10 9 38 38 H 1.08000 * 120.00582 * 226.70011 * 13 12 11 39 39 H 1.08005 * 120.00443 * 192.36075 * 14 13 12 40 40 H 0.96999 * 120.00862 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 1.6619 2.0815 1.2210 7 6 1.4180 3.4152 1.1686 8 6 1.6871 4.1272 0.0104 9 6 1.4433 5.4860 -0.0402 10 6 0.9184 6.1466 1.0592 11 6 0.6443 5.4567 2.2195 12 6 0.8915 4.0807 2.2874 13 6 0.6025 3.3379 3.5210 14 6 -0.5767 3.5172 4.1576 15 6 -1.6316 4.2088 3.5130 16 8 -1.5261 4.5253 2.3427 17 8 -2.7534 4.5167 4.1965 18 6 -3.7183 5.1757 3.5241 19 1 -3.5730 5.4335 2.4855 20 6 -4.8988 5.5230 4.1670 21 7 -5.0755 5.2099 5.4309 22 14 -6.2356 6.4368 3.2356 23 1 -5.7939 6.6694 1.8371 24 1 -7.4798 5.6259 3.2329 25 1 -6.4962 7.7410 3.8962 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9994 0.9054 0.7161 32 1 3.8531 0.9570 -1.0572 33 1 3.9281 2.4720 -0.1254 34 1 2.0923 3.6198 -0.8526 35 1 1.6592 6.0363 -0.9440 36 1 0.7271 7.2082 1.0073 37 1 0.2398 5.9766 3.0753 38 1 1.3318 2.6483 3.9197 39 1 -0.7145 3.1332 5.1577 40 1 -5.9002 5.4528 5.8801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729873059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = -91.317780 kcal Electronic energy + Delta-G solvation = -23109.094817 eV Core-core repulsion = 19661.571837 eV Total energy + Delta-G solvation = -3447.522980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.53282 -40.82963 -38.80132 -37.29405 -35.17823 -34.60890 -34.28721 -31.27872 -30.93252 -30.30768 -27.72905 -25.37604 -24.97688 -23.74915 -22.89700 -21.53193 -20.38497 -19.85993 -19.34805 -18.38533 -17.10833 -16.82860 -16.42861 -16.37058 -16.15566 -15.90634 -15.61693 -15.03140 -14.88319 -14.63421 -14.51529 -14.11696 -13.87400 -13.68433 -13.49365 -13.29385 -13.05590 -12.76215 -12.66214 -12.42646 -12.34454 -12.18441 -12.03495 -12.02678 -11.91766 -11.53914 -11.45475 -11.05994 -10.72175 -10.63685 -9.35122 -8.87909 -8.53774 -6.28494 -0.28024 0.59040 0.82484 1.32636 1.38623 1.51467 2.15060 2.24494 2.31417 2.91912 3.04421 3.09135 3.71257 3.78099 3.89662 4.00646 4.08549 4.14199 4.26260 4.38120 4.44443 4.54777 4.59978 4.67746 4.69608 4.74034 4.86833 4.97540 5.00170 5.02646 5.11099 5.14298 5.17588 5.26705 5.34998 5.39105 5.44892 5.58640 5.72461 5.85410 5.90733 6.55517 6.75191 6.91576 7.84602 8.67613 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.004226 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.972316 B = 6624.335795 C = 7029.083619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C 0.067 3.933 4 H 0.075 0.925 5 C -0.169 4.169 6 O -0.317 6.317 7 C 0.143 3.857 8 C -0.222 4.222 9 C -0.071 4.071 10 C -0.180 4.180 11 C -0.028 4.028 12 C -0.120 4.120 13 C 0.008 3.992 14 C -0.205 4.205 15 C 0.422 3.578 16 O -0.560 6.560 17 O -0.249 6.249 18 C -0.409 4.409 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.904 5.904 22 Si 1.017 2.983 23 H -0.265 1.265 24 H -0.260 1.260 25 H -0.259 1.259 26 H 0.069 0.931 27 H 0.029 0.971 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.170 0.830 39 H 0.150 0.850 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.876 -6.721 -11.759 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C 0.012 3.988 4 H 0.093 0.907 5 C -0.226 4.226 6 O -0.231 6.231 7 C 0.097 3.903 8 C -0.241 4.241 9 C -0.088 4.088 10 C -0.198 4.198 11 C -0.047 4.047 12 C -0.121 4.121 13 C -0.011 4.011 14 C -0.224 4.224 15 C 0.274 3.726 16 O -0.459 6.459 17 O -0.159 6.159 18 C -0.485 4.485 19 H 0.099 0.901 20 C -0.208 4.208 21 N -0.542 5.542 22 Si 0.836 3.164 23 H -0.189 1.189 24 H -0.185 1.185 25 H -0.183 1.183 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.188 0.812 39 H 0.167 0.833 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.725 -6.768 -11.710 21.509 hybrid contribution -1.022 0.574 0.009 1.172 sum 15.703 -6.194 -11.701 20.539 Atomic orbital electron populations 1.21765 0.96605 1.02090 1.00931 1.21688 0.95393 0.93588 1.04416 1.22866 0.96542 0.94207 0.85207 0.90707 1.22282 0.93152 1.03105 1.04056 1.86013 1.82806 1.18021 1.36275 1.19046 0.94086 0.83309 0.93815 1.21364 1.08963 0.95660 0.98085 1.21289 0.95414 0.93872 0.98261 1.21087 1.04075 1.00907 0.93743 1.20937 0.92704 0.92762 0.98269 1.18385 1.05502 0.93596 0.94577 1.22511 0.94773 0.92671 0.91118 1.21473 0.92711 1.05773 1.02415 1.20675 0.84535 0.81013 0.86399 1.90716 1.81474 1.55247 1.18470 1.84016 1.24819 1.63949 1.43076 1.21438 0.95035 1.35484 0.96494 0.90141 1.26561 0.99574 0.97703 0.96951 1.70071 1.27618 1.45125 1.11348 0.84582 0.76166 0.77900 0.77785 1.18900 1.18471 1.18311 0.91154 0.95194 0.93094 0.87266 0.90692 0.91456 0.88646 0.92293 0.82889 0.82913 0.85163 0.88578 0.81235 0.83263 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.81 71.98 0.71 -2.78 16 2 C -0.11 -1.95 5.64 30.59 0.17 -1.78 16 3 C 0.07 1.33 2.19 30.60 0.07 1.40 16 4 H 0.08 1.47 5.99 -2.39 -0.01 1.46 16 5 C -0.17 -2.41 9.34 71.98 0.67 -1.74 16 6 O -0.32 -8.95 8.77 -89.99 -0.79 -9.74 16 7 C 0.14 4.59 6.68 22.89 0.15 4.75 16 8 C -0.22 -6.07 8.56 22.33 0.19 -5.88 16 9 C -0.07 -1.94 10.03 22.33 0.22 -1.71 16 10 C -0.18 -5.95 10.02 22.23 0.22 -5.73 16 11 C -0.03 -1.10 6.82 22.57 0.15 -0.95 16 12 C -0.12 -4.44 4.33 -20.07 -0.09 -4.53 16 13 C 0.01 0.27 9.33 23.83 0.22 0.49 16 14 C -0.20 -8.55 9.84 22.41 0.22 -8.33 16 15 C 0.42 22.68 6.81 68.67 0.47 23.15 16 16 O -0.56 -31.25 11.64 19.20 0.22 -31.02 16 17 O -0.25 -15.55 9.73 9.88 0.10 -15.45 16 18 C -0.41 -25.76 9.65 67.96 0.66 -25.10 16 19 H 0.08 5.15 6.86 -2.91 -0.02 5.13 16 20 C -0.01 -0.48 5.50 84.90 0.47 -0.01 16 21 N -0.90 -55.25 13.67 21.64 0.30 -54.95 16 22 Si 1.02 44.89 29.55 68.60 2.03 46.92 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.03 0.87 7.82 -2.38 -0.02 0.85 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.91 7.54 -2.39 -0.02 0.89 16 34 H 0.15 3.14 5.65 -2.91 -0.02 3.12 16 35 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.10 4.07 7.39 -2.91 -0.02 4.05 16 38 H 0.17 4.53 8.06 -2.91 -0.02 4.50 16 39 H 0.15 5.52 8.06 -2.91 -0.02 5.50 16 40 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -77.63 339.86 7.39 -70.24 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.03 Total: 22.77 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 4.51 Total: -28.75 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.30 Total: -54.95 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.47 Total: -56.22 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -77.63 7.39 -70.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729873059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.081 kcal (2) G-P(sol) polarization free energy of solvation -77.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds