Wall clock time and date at job start Tue Mar 31 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99815 * 2 1 4 4 C 1.38747 * 120.05768 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94320 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05673 * 359.72783 * 5 4 3 7 7 C 1.38247 * 120.10756 * 0.54904 * 6 5 4 8 8 C 1.50706 * 119.96927 * 179.72131 * 7 6 5 9 9 C 1.50697 * 110.01538 * 352.24156 * 8 7 6 10 10 O 1.21216 * 120.00018 * 120.70056 * 9 8 7 11 11 O 1.34311 * 120.00181 * 300.69402 * 9 8 7 12 12 C 1.34918 * 117.00410 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99587 * 0.02562 * 12 11 9 14 14 C 1.38754 * 120.00122 * 180.02562 * 12 11 9 15 15 N 1.31445 * 119.99962 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47200 * 89.99941 * 16 14 12 18 18 H 1.48502 * 109.46694 * 210.00061 * 16 14 12 19 19 H 1.48503 * 109.46933 * 329.99985 * 16 14 12 20 20 C 1.54263 * 110.03279 * 230.79541 * 8 7 6 21 21 C 1.54887 * 104.19476 * 217.10693 * 20 8 7 22 22 C 1.54892 * 102.74850 * 37.94274 * 21 20 8 23 23 C 1.53874 * 110.02905 * 113.62697 * 8 7 6 24 24 C 1.38164 * 120.05815 * 359.45301 * 7 6 5 25 25 H 1.09001 * 109.47339 * 60.00185 * 1 2 3 26 26 H 1.09003 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47109 * 300.00204 * 1 2 3 28 28 H 1.08001 * 120.02728 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.97039 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.94578 * 180.29001 * 6 5 4 31 31 H 0.97000 * 119.99692 * 179.97438 * 15 14 12 32 32 H 1.09001 * 110.48897 * 335.78248 * 20 8 7 33 33 H 1.08996 * 110.48494 * 98.42807 * 20 8 7 34 34 H 1.08994 * 110.75834 * 279.62831 * 21 20 8 35 35 H 1.09001 * 110.91266 * 156.33098 * 21 20 8 36 36 H 1.09006 * 110.48668 * 203.37571 * 22 21 20 37 37 H 1.09004 * 110.59749 * 80.79536 * 22 21 20 38 38 H 1.08994 * 110.03583 * 238.56994 * 23 8 7 39 39 H 1.09005 * 110.03343 * 359.95457 * 23 8 7 40 40 H 1.08000 * 120.02828 * 180.25455 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6758 0.0046 7 6 4.0559 2.5171 -0.0006 8 6 5.5608 2.5981 -0.0007 9 6 6.0003 4.0277 -0.1859 10 8 6.6835 4.5659 0.6585 11 8 5.6352 4.7053 -1.2865 12 6 6.0627 5.9808 -1.3905 13 1 6.6704 6.4120 -0.6088 14 6 5.7214 6.7384 -2.5017 15 7 4.9813 6.2137 -3.4529 16 14 6.3138 8.5042 -2.6460 17 1 7.6264 8.5308 -3.3400 18 1 5.3266 9.2954 -3.4236 19 1 6.4593 9.0899 -1.2892 20 6 6.1374 1.7166 -1.1278 21 6 7.4269 1.1143 -0.5168 22 6 7.0148 0.8423 0.9513 23 6 6.1187 2.0422 1.3212 24 6 3.4311 1.2848 -0.0001 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2128 2.3203 -0.0005 29 1 1.3340 4.5114 -0.0011 30 1 3.7922 4.6380 0.0089 31 1 4.7424 6.7435 -4.2295 32 1 5.4348 0.9261 -1.3912 33 1 6.3763 2.3227 -2.0016 34 1 8.2469 1.8310 -0.5613 35 1 7.6992 0.1864 -1.0198 36 1 7.8941 0.8102 1.5947 37 1 6.4545 -0.0897 1.0259 38 1 6.7080 2.8060 1.8284 39 1 5.3009 1.7146 1.9631 40 1 4.0206 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731264172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:09 Heat of formation + Delta-G solvation = -100.158955 kcal Electronic energy + Delta-G solvation = -23764.969611 eV Core-core repulsion = 20317.063248 eV Total energy + Delta-G solvation = -3447.906362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.46530 -39.35515 -37.64817 -36.49927 -34.92400 -32.16259 -31.45050 -30.26218 -28.40389 -27.67424 -27.11576 -25.30732 -22.90362 -21.66672 -21.26282 -20.38503 -18.83244 -17.83906 -17.61184 -16.20935 -15.97857 -15.71522 -15.64219 -15.27439 -15.00610 -14.37971 -14.12420 -13.81559 -13.49521 -13.22813 -12.96399 -12.56863 -12.51811 -12.20423 -11.73974 -11.46498 -11.38713 -11.25624 -11.07202 -10.84297 -10.73491 -10.72620 -10.55135 -10.50469 -10.40419 -10.26269 -10.15490 -9.75479 -8.91581 -8.55267 -8.45156 -7.87017 -6.38508 -4.06766 1.61518 1.81755 3.10821 3.19652 3.25009 3.33253 3.56169 3.93743 4.07293 4.50991 4.84520 4.95738 4.97976 5.06122 5.11870 5.18341 5.22447 5.28617 5.40133 5.44538 5.69363 5.78981 5.80701 5.82552 5.90008 5.95810 6.04199 6.15159 6.20006 6.26005 6.35464 6.51227 6.54951 6.62809 6.72195 6.79221 6.94215 7.05613 7.06492 7.41832 7.60481 7.97019 8.72433 9.10015 9.89231 10.78675 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.005822 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.238204 B = 4807.783026 C = 6101.932405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.212 4.212 5 C -0.077 4.077 6 C -0.127 4.127 7 C -0.022 4.022 8 C -0.006 4.006 9 C 0.412 3.588 10 O -0.551 6.551 11 O -0.205 6.205 12 C -0.385 4.385 13 H 0.094 0.906 14 C 0.045 3.955 15 N -0.861 5.861 16 Si 0.939 3.061 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.143 4.143 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.268 0.732 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 -11.342 5.455 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.231 4.231 5 C -0.095 4.095 6 C -0.145 4.145 7 C -0.023 4.023 8 C -0.007 4.007 9 C 0.258 3.742 10 O -0.448 6.448 11 O -0.112 6.112 12 C -0.462 4.462 13 H 0.112 0.888 14 C -0.160 4.160 15 N -0.497 5.497 16 Si 0.763 3.237 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.148 4.148 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.162 4.162 25 H 0.072 0.928 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.153 0.847 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.961 -11.312 5.446 13.898 hybrid contribution -0.119 1.143 -0.244 1.175 sum -6.080 -10.169 5.202 12.940 Atomic orbital electron populations 1.22978 0.78966 1.03377 1.01250 1.86025 1.20912 1.27264 1.89299 1.18833 0.92083 0.83844 0.98126 1.21140 0.99496 0.92495 1.09956 1.20900 0.94539 0.96828 0.97249 1.21347 0.93834 0.99035 1.00269 1.19315 0.93573 0.92471 0.96914 1.19883 0.91395 0.91703 0.97699 1.22715 0.80948 0.88527 0.82049 1.90520 1.39817 1.69939 1.44508 1.83940 1.63564 1.26032 1.37632 1.21217 1.33179 0.84802 1.06954 0.88828 1.25285 0.96209 0.99893 0.94569 1.70007 1.34171 1.37075 1.08489 0.85748 0.78471 0.80613 0.78836 1.19929 1.20388 1.19129 1.22548 0.96751 0.98294 0.97205 1.22526 0.97807 1.00480 0.95488 1.22344 0.99086 0.97729 0.96589 1.22313 0.99529 0.98264 0.94950 1.20045 0.91019 0.97825 1.07283 0.92797 0.88667 0.92919 0.85976 0.85859 0.84735 0.92168 0.90418 0.89894 0.91245 0.91418 0.91636 0.91787 0.88815 0.91324 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.44 10.50 -19.43 -0.20 -4.65 16 3 C 0.12 1.81 6.69 -39.22 -0.26 1.55 16 4 C -0.21 -3.21 9.04 -39.43 -0.36 -3.56 16 5 C -0.08 -1.32 10.04 -39.60 -0.40 -1.72 16 6 C -0.13 -2.56 8.83 -39.56 -0.35 -2.91 16 7 C -0.02 -0.42 4.60 -104.64 -0.48 -0.91 16 8 C -0.01 -0.11 0.72 -155.69 -0.11 -0.22 16 9 C 0.41 10.18 5.07 36.00 0.18 10.37 16 10 O -0.55 -14.75 14.45 -19.06 -0.28 -15.02 16 11 O -0.20 -5.75 8.07 -20.70 -0.17 -5.91 16 12 C -0.39 -11.23 9.65 30.92 0.30 -10.94 16 13 H 0.09 2.77 6.86 -52.49 -0.36 2.41 16 14 C 0.04 1.25 5.49 -17.53 -0.10 1.15 16 15 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 16 Si 0.94 21.23 29.55 -169.99 -5.02 16.20 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 20 C -0.11 -1.94 5.76 -25.07 -0.14 -2.08 16 21 C -0.13 -1.86 6.91 -24.74 -0.17 -2.03 16 22 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16 23 C -0.11 -1.91 5.90 -25.61 -0.15 -2.06 16 24 C -0.14 -2.37 8.35 -39.43 -0.33 -2.70 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 28 H 0.12 1.48 6.30 -52.49 -0.33 1.15 16 29 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 30 H 0.13 3.14 5.89 -52.49 -0.31 2.84 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.08 1.21 6.44 -51.93 -0.33 0.88 16 33 H 0.08 1.66 7.64 -51.93 -0.40 1.26 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.77 6.39 -51.93 -0.33 1.44 16 39 H 0.07 1.06 7.49 -51.93 -0.39 0.67 16 40 H 0.13 1.91 7.32 -52.49 -0.38 1.53 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -32.63 327.94 -6.82 -39.45 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.30 Total: 5.80 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.55 Total: -16.61 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.76 Total: -24.20 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.65 Total: -25.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.63 -6.82 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731264172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.706 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds