Wall clock time and date at job start Tue Mar 31 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99815 * 2 1 4 4 C 1.38747 * 120.05768 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94320 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05673 * 359.72783 * 5 4 3 7 7 C 1.38247 * 120.10756 * 0.54904 * 6 5 4 8 8 C 1.50706 * 119.96927 * 179.72131 * 7 6 5 9 9 C 1.50697 * 110.01538 * 352.24156 * 8 7 6 10 10 O 1.21216 * 120.00018 * 120.70056 * 9 8 7 11 11 O 1.34311 * 120.00181 * 300.69402 * 9 8 7 12 12 C 1.34918 * 117.00410 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99587 * 0.02562 * 12 11 9 14 14 C 1.38754 * 120.00122 * 180.02562 * 12 11 9 15 15 N 1.31445 * 119.99962 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47200 * 89.99941 * 16 14 12 18 18 H 1.48502 * 109.46694 * 210.00061 * 16 14 12 19 19 H 1.48503 * 109.46933 * 329.99985 * 16 14 12 20 20 C 1.54263 * 110.03279 * 230.79541 * 8 7 6 21 21 C 1.54887 * 104.19476 * 217.10693 * 20 8 7 22 22 C 1.54892 * 102.74850 * 37.94274 * 21 20 8 23 23 C 1.53874 * 110.02905 * 113.62697 * 8 7 6 24 24 C 1.38164 * 120.05815 * 359.45301 * 7 6 5 25 25 H 1.09001 * 109.47339 * 60.00185 * 1 2 3 26 26 H 1.09003 * 109.47311 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47109 * 300.00204 * 1 2 3 28 28 H 1.08001 * 120.02728 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.97039 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.94578 * 180.29001 * 6 5 4 31 31 H 0.97000 * 119.99692 * 179.97438 * 15 14 12 32 32 H 1.09001 * 110.48897 * 335.78248 * 20 8 7 33 33 H 1.08996 * 110.48494 * 98.42807 * 20 8 7 34 34 H 1.08994 * 110.75834 * 279.62831 * 21 20 8 35 35 H 1.09001 * 110.91266 * 156.33098 * 21 20 8 36 36 H 1.09006 * 110.48668 * 203.37571 * 22 21 20 37 37 H 1.09004 * 110.59749 * 80.79536 * 22 21 20 38 38 H 1.08994 * 110.03583 * 238.56994 * 23 8 7 39 39 H 1.09005 * 110.03343 * 359.95457 * 23 8 7 40 40 H 1.08000 * 120.02828 * 180.25455 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6758 0.0046 7 6 4.0559 2.5171 -0.0006 8 6 5.5608 2.5981 -0.0007 9 6 6.0003 4.0277 -0.1859 10 8 6.6835 4.5659 0.6585 11 8 5.6352 4.7053 -1.2865 12 6 6.0627 5.9808 -1.3905 13 1 6.6704 6.4120 -0.6088 14 6 5.7214 6.7384 -2.5017 15 7 4.9813 6.2137 -3.4529 16 14 6.3138 8.5042 -2.6460 17 1 7.6264 8.5308 -3.3400 18 1 5.3266 9.2954 -3.4236 19 1 6.4593 9.0899 -1.2892 20 6 6.1374 1.7166 -1.1278 21 6 7.4269 1.1143 -0.5168 22 6 7.0148 0.8423 0.9513 23 6 6.1187 2.0422 1.3212 24 6 3.4311 1.2848 -0.0001 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2128 2.3203 -0.0005 29 1 1.3340 4.5114 -0.0011 30 1 3.7922 4.6380 0.0089 31 1 4.7424 6.7435 -4.2295 32 1 5.4348 0.9261 -1.3912 33 1 6.3763 2.3227 -2.0016 34 1 8.2469 1.8310 -0.5613 35 1 7.6992 0.1864 -1.0198 36 1 7.8941 0.8102 1.5947 37 1 6.4545 -0.0897 1.0259 38 1 6.7080 2.8060 1.8284 39 1 5.3009 1.7146 1.9631 40 1 4.0206 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731264172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:09 Heat of formation + Delta-G solvation = -119.237734 kcal Electronic energy + Delta-G solvation = -23765.796929 eV Core-core repulsion = 20317.063248 eV Total energy + Delta-G solvation = -3448.733680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.02921 -40.77945 -39.23462 -37.84595 -36.92751 -34.31694 -32.78866 -31.51985 -29.74976 -29.06846 -28.08280 -27.34356 -24.39644 -23.06108 -22.79720 -21.64596 -20.36295 -19.84248 -19.22808 -17.85352 -17.37343 -17.27843 -16.77385 -16.57939 -16.35935 -16.27569 -15.74847 -15.47659 -14.76521 -14.58458 -14.31653 -14.18374 -13.83757 -13.64720 -13.29587 -13.17939 -12.75114 -12.68041 -12.48320 -12.26155 -12.20187 -12.11745 -12.06594 -11.99231 -11.93149 -11.76173 -11.64067 -11.44434 -10.88706 -10.69183 -9.77656 -9.16019 -8.53655 -6.33337 0.29679 0.46625 1.27060 1.30877 1.47596 1.60296 2.07842 2.35619 2.69200 2.73189 2.96376 3.52693 3.60929 3.71325 3.87551 4.11146 4.19820 4.31892 4.37627 4.41003 4.45846 4.47841 4.53773 4.57640 4.63729 4.70257 4.78748 4.81928 4.94116 5.03056 5.04363 5.10678 5.20169 5.23850 5.28202 5.28565 5.47475 5.48653 5.65013 5.71909 5.82771 6.46768 6.64234 6.90939 7.78252 8.66252 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.005822 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.238204 B = 4807.783026 C = 6101.932405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.125 3.875 4 C -0.203 4.203 5 C -0.082 4.082 6 C -0.167 4.167 7 C -0.035 4.035 8 C -0.006 4.006 9 C 0.411 3.589 10 O -0.581 6.581 11 O -0.228 6.228 12 C -0.423 4.423 13 H 0.076 0.924 14 C 0.001 3.999 15 N -0.897 5.897 16 Si 1.011 2.989 17 H -0.260 1.260 18 H -0.259 1.259 19 H -0.265 1.265 20 C -0.109 4.109 21 C -0.122 4.122 22 C -0.108 4.108 23 C -0.112 4.112 24 C -0.143 4.143 25 H 0.061 0.939 26 H 0.123 0.877 27 H 0.065 0.935 28 H 0.159 0.841 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.278 0.722 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -13.742 5.584 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.080 3.920 4 C -0.222 4.222 5 C -0.100 4.100 6 C -0.186 4.186 7 C -0.035 4.035 8 C -0.007 4.007 9 C 0.259 3.741 10 O -0.479 6.479 11 O -0.136 6.136 12 C -0.499 4.499 13 H 0.094 0.906 14 C -0.200 4.200 15 N -0.534 5.534 16 Si 0.831 3.169 17 H -0.185 1.185 18 H -0.183 1.183 19 H -0.190 1.190 20 C -0.147 4.147 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.161 4.161 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.084 0.916 28 H 0.176 0.824 29 H 0.153 0.847 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.355 -13.741 5.579 16.554 hybrid contribution 0.184 1.794 -0.236 1.819 sum -7.171 -11.947 5.343 14.923 Atomic orbital electron populations 1.23375 0.76426 1.05726 1.02246 1.86034 1.23446 1.25854 1.88673 1.18916 0.91979 0.84822 0.96327 1.21443 1.01292 0.91229 1.08218 1.21049 0.93290 0.98636 0.96981 1.21147 0.95568 0.97627 1.04231 1.19268 0.92889 0.93213 0.98114 1.20084 0.92521 0.88050 1.00030 1.23928 0.79313 0.90406 0.80495 1.90473 1.41047 1.71302 1.45119 1.83967 1.64414 1.25911 1.39273 1.21373 1.34696 0.86065 1.07720 0.90602 1.26433 0.95642 1.04494 0.93392 1.70095 1.34936 1.39231 1.09123 0.84717 0.78778 0.74366 0.79089 1.18470 1.18300 1.18971 1.22581 0.98826 0.98054 0.95225 1.22544 0.95491 1.01225 0.96651 1.22358 0.99331 0.97302 0.95560 1.22337 1.00254 0.98859 0.93455 1.20146 0.91961 0.97208 1.06795 0.92039 0.85850 0.91594 0.82371 0.84721 0.89533 0.91317 0.87786 0.93563 0.93571 0.87800 0.90066 0.88385 0.91735 0.89713 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.72 10.50 -92.43 -0.97 -8.69 16 3 C 0.12 3.57 6.69 22.51 0.15 3.72 16 4 C -0.20 -5.70 9.04 22.36 0.20 -5.50 16 5 C -0.08 -2.83 10.04 22.25 0.22 -2.60 16 6 C -0.17 -7.18 8.83 22.28 0.20 -6.98 16 7 C -0.03 -1.33 4.60 -19.88 -0.09 -1.43 16 8 C -0.01 -0.23 0.72 -52.95 -0.04 -0.27 16 9 C 0.41 21.94 5.07 71.24 0.36 22.30 16 10 O -0.58 -33.67 14.45 20.76 0.30 -33.37 16 11 O -0.23 -13.85 8.07 14.89 0.12 -13.73 16 12 C -0.42 -26.41 9.65 67.94 0.66 -25.75 16 13 H 0.08 4.85 6.86 -2.91 -0.02 4.83 16 14 C 0.00 0.07 5.49 84.87 0.47 0.53 16 15 N -0.90 -53.94 13.67 21.62 0.30 -53.65 16 16 Si 1.01 44.58 29.55 68.60 2.03 46.61 16 17 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 C -0.11 -3.85 5.76 31.67 0.18 -3.67 16 21 C -0.12 -3.44 6.91 31.89 0.22 -3.22 16 22 C -0.11 -2.70 6.83 31.67 0.22 -2.48 16 23 C -0.11 -3.75 5.90 31.32 0.18 -3.57 16 24 C -0.14 -4.46 8.35 22.37 0.19 -4.27 16 25 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 26 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 28 H 0.16 3.21 6.30 -2.91 -0.02 3.19 16 29 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.09 4.50 5.89 -2.91 -0.02 4.48 16 31 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.10 3.07 6.44 -2.39 -0.02 3.06 16 33 H 0.05 1.95 7.64 -2.39 -0.02 1.93 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 2.54 6.39 -2.39 -0.02 2.53 16 39 H 0.08 2.54 7.49 -2.38 -0.02 2.52 16 40 H 0.15 3.96 7.32 -2.91 -0.02 3.94 16 Total: -1.00 -77.49 327.94 7.05 -70.43 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 1.05 Total: 24.23 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 4.23 Total: -31.84 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.30 Total: -53.65 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: -0.55 Total: -55.79 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -77.49 7.05 -70.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731264172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.804 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds