Wall clock time and date at job start Tue Mar 31 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47477 * 2 1 4 4 C 1.53002 * 109.47316 * 120.00477 * 2 1 3 5 5 C 1.50694 * 109.46980 * 294.99565 * 4 2 1 6 6 O 1.20829 * 119.99963 * 0.02562 * 5 4 2 7 7 O 1.34229 * 120.00474 * 179.97438 * 5 4 2 8 8 C 1.45192 * 117.00470 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46975 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46888 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00416 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99811 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99401 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 120.00137 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47463 * 90.00343 * 14 12 10 16 16 H 1.48505 * 109.47215 * 210.00556 * 14 12 10 17 17 H 1.48500 * 109.47171 * 329.99947 * 14 12 10 18 18 C 1.50704 * 109.47032 * 240.00521 * 2 1 3 19 19 O 1.21256 * 119.99507 * 269.99839 * 18 2 1 20 20 C 1.47166 * 120.00398 * 89.99551 * 18 2 1 21 21 C 1.39846 * 120.17201 * 179.97438 * 20 18 2 22 22 C 1.37891 * 119.82489 * 179.75025 * 21 20 18 23 23 C 1.38412 * 120.16717 * 0.25583 * 22 21 20 24 24 C 1.38402 * 120.34971 * 359.97438 * 23 22 21 25 25 C 1.37883 * 120.17569 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.46915 * 299.99475 * 1 2 3 27 27 H 1.08994 * 109.47413 * 59.99739 * 1 2 3 28 28 H 1.09004 * 109.46784 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47220 * 55.00042 * 4 2 1 30 30 H 1.09003 * 109.46932 * 174.99925 * 4 2 1 31 31 H 1.09001 * 109.47259 * 299.99616 * 8 7 5 32 32 H 1.09002 * 109.47467 * 60.00259 * 8 7 5 33 33 H 1.09003 * 109.46881 * 299.99322 * 9 8 7 34 34 H 1.08997 * 109.47329 * 60.00366 * 9 8 7 35 35 H 0.97008 * 119.99317 * 180.02562 * 13 12 10 36 36 H 1.08002 * 120.09198 * 0.03340 * 21 20 18 37 37 H 1.07994 * 119.91964 * 180.28383 * 22 21 20 38 38 H 1.08001 * 119.81783 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.90871 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.08969 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6415 0.0569 2.4765 6 8 1.0135 1.0830 2.3637 7 8 1.9832 -0.3902 3.6952 8 6 1.5653 0.4102 4.8322 9 6 2.0428 -0.2530 6.1257 10 6 1.6085 0.5775 7.3059 11 1 1.0483 1.4875 7.1491 12 6 1.9272 0.1761 8.5859 13 7 1.5486 0.9012 9.6157 14 14 2.8967 -1.3972 8.8572 15 1 4.3495 -1.0896 8.8587 16 1 2.5159 -1.9945 10.1624 17 1 2.5954 -2.3587 7.7663 18 6 2.0323 -0.7103 -1.2306 19 8 2.2344 -1.9055 -1.2005 20 6 2.2775 0.0466 -2.4686 21 6 2.7441 -0.6089 -3.6124 22 6 2.9666 0.1064 -4.7701 23 6 2.7342 1.4705 -4.8003 24 6 2.2769 2.1272 -3.6711 25 6 2.0497 1.4260 -2.5059 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6055 -1.7199 1.2950 30 1 3.1264 -0.7995 1.2054 31 1 1.9990 1.4071 4.7538 32 1 0.4780 0.4867 4.8427 33 1 1.6093 -1.2500 6.2043 34 1 3.1301 -0.3291 6.1151 35 1 1.7731 0.6190 10.5163 36 1 2.9255 -1.6734 -3.5905 37 1 3.3225 -0.3991 -5.6556 38 1 2.9099 2.0252 -5.7102 39 1 2.0975 3.1918 -3.7028 40 1 1.6925 1.9397 -1.6256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732859643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:18 Heat of formation + Delta-G solvation = -113.691994 kcal Electronic energy + Delta-G solvation = -21761.373992 eV Core-core repulsion = 18312.880793 eV Total energy + Delta-G solvation = -3448.493199 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78137 -39.93810 -38.55851 -36.50638 -34.48422 -33.32195 -31.74175 -31.36555 -30.81376 -28.44543 -25.68588 -25.05779 -23.29775 -22.56062 -20.88021 -20.53947 -19.41462 -18.14921 -17.40332 -16.69081 -16.36460 -16.09231 -15.81471 -15.54499 -15.22394 -14.65249 -14.44486 -14.20654 -14.08536 -13.90142 -13.40792 -13.09548 -12.90360 -12.70798 -12.44935 -12.25468 -12.07347 -11.58526 -11.53221 -11.39578 -11.29324 -11.19356 -10.70542 -10.54769 -10.06824 -9.95839 -9.77612 -9.69911 -9.42988 -9.39749 -9.35659 -8.63059 -6.13815 -4.15030 0.26396 0.94403 2.05014 2.46053 2.96489 3.27802 3.35257 3.39960 3.40022 3.73933 4.30348 4.38183 4.40614 4.51123 4.60641 4.71574 4.82098 4.96803 5.00019 5.14182 5.19843 5.26706 5.38264 5.44241 5.47126 5.54829 5.62965 5.80018 5.90734 5.93804 5.95618 5.98298 6.00823 6.10191 6.43772 6.44439 6.79119 7.16557 7.19104 7.21479 7.61489 8.09724 8.38586 8.87622 9.45842 10.98666 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.002499 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.077602 B =11199.837093 C =11526.131149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 H 0.107 0.893 4 C -0.106 4.106 5 C 0.459 3.541 6 O -0.514 6.514 7 O -0.360 6.360 8 C 0.082 3.918 9 C -0.010 4.010 10 C -0.528 4.528 11 H 0.075 0.925 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.881 3.119 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.263 1.263 18 C 0.405 3.595 19 O -0.448 6.448 20 C -0.168 4.168 21 C -0.062 4.062 22 C -0.135 4.135 23 C -0.089 4.089 24 C -0.133 4.133 25 C -0.071 4.071 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.266 0.734 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -0.827 -29.850 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 H 0.125 0.875 4 C -0.144 4.144 5 C 0.303 3.697 6 O -0.403 6.403 7 O -0.277 6.277 8 C 0.010 3.990 9 C -0.048 4.048 10 C -0.565 4.565 11 H 0.093 0.907 12 C -0.131 4.131 13 N -0.535 5.535 14 Si 0.708 3.292 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.187 1.187 18 C 0.282 3.718 19 O -0.322 6.322 20 C -0.169 4.169 21 C -0.080 4.080 22 C -0.153 4.153 23 C -0.107 4.107 24 C -0.151 4.151 25 C -0.089 4.089 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.877 -1.146 -29.598 29.680 hybrid contribution 0.473 -0.472 0.304 0.734 sum 2.350 -1.618 -29.294 29.433 Atomic orbital electron populations 1.21885 0.91371 1.02938 1.04371 1.21439 0.99156 1.01586 0.91977 0.87458 1.21232 1.04034 1.00510 0.88604 1.23351 0.76631 0.84132 0.85613 1.90603 1.37623 1.24647 1.87470 1.86492 1.71952 1.53795 1.15418 1.23390 0.99734 0.93899 0.81978 1.19634 0.97223 0.97446 0.90479 1.20839 1.36897 1.09841 0.88962 0.90656 1.24944 0.95336 0.96999 0.95784 1.69902 1.46207 1.38655 0.98713 0.86745 0.80592 0.83996 0.77844 1.20059 1.21163 1.18738 1.22452 0.72834 0.88255 0.88269 1.90527 1.39634 1.16602 1.85441 1.20502 1.05686 0.94909 0.95778 1.21457 0.94338 1.00594 0.91627 1.21179 1.01399 0.94477 0.98229 1.21468 0.96186 0.94661 0.98428 1.21202 1.00439 1.00508 0.92951 1.21624 0.95695 0.92925 0.98658 0.89077 0.91940 0.92211 0.86852 0.87608 0.91681 0.91634 0.95361 0.95806 0.92433 0.84860 0.85371 0.85546 0.85200 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.92 37.16 0.33 -1.19 16 2 C -0.12 -1.27 1.81 -91.77 -0.17 -1.44 16 3 H 0.11 1.03 6.28 -51.93 -0.33 0.70 16 4 C -0.11 -1.27 4.80 -27.88 -0.13 -1.40 16 5 C 0.46 7.31 7.68 36.00 0.28 7.58 16 6 O -0.51 -8.98 13.72 -18.75 -0.26 -9.24 16 7 O -0.36 -6.75 10.22 -39.26 -0.40 -7.15 16 8 C 0.08 1.75 5.40 37.16 0.20 1.95 16 9 C -0.01 -0.25 4.42 -27.88 -0.12 -0.37 16 10 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 11 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 14 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 18 C 0.40 4.28 6.17 -30.68 -0.19 4.09 16 19 O -0.45 -5.79 16.27 5.58 0.09 -5.70 16 20 C -0.17 -1.54 5.87 -105.07 -0.62 -2.16 16 21 C -0.06 -0.53 9.60 -39.11 -0.38 -0.90 16 22 C -0.13 -0.90 10.03 -39.64 -0.40 -1.29 16 23 C -0.09 -0.54 10.04 -39.46 -0.40 -0.93 16 24 C -0.13 -0.86 10.03 -39.65 -0.40 -1.26 16 25 C -0.07 -0.54 9.37 -39.11 -0.37 -0.91 16 26 H 0.09 1.11 5.96 -51.93 -0.31 0.80 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.11 1.30 8.02 -51.93 -0.42 0.88 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 32 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 33 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 34 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.13 1.10 7.65 -52.49 -0.40 0.70 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.14 0.90 6.35 -52.49 -0.33 0.56 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -32.64 341.85 -7.62 -40.26 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.52 Total: -2.01 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.78 Total: -11.57 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.77 Total: -26.56 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.57 Total: -22.09 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.64 -7.62 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732859643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.431 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds