Wall clock time and date at job start Tue Mar 31 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47477 * 2 1 4 4 C 1.53002 * 109.47316 * 120.00477 * 2 1 3 5 5 C 1.50694 * 109.46980 * 294.99565 * 4 2 1 6 6 O 1.20829 * 119.99963 * 0.02562 * 5 4 2 7 7 O 1.34229 * 120.00474 * 179.97438 * 5 4 2 8 8 C 1.45192 * 117.00470 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46975 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.46888 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00416 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99811 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99401 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 120.00137 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47463 * 90.00343 * 14 12 10 16 16 H 1.48505 * 109.47215 * 210.00556 * 14 12 10 17 17 H 1.48500 * 109.47171 * 329.99947 * 14 12 10 18 18 C 1.50704 * 109.47032 * 240.00521 * 2 1 3 19 19 O 1.21256 * 119.99507 * 269.99839 * 18 2 1 20 20 C 1.47166 * 120.00398 * 89.99551 * 18 2 1 21 21 C 1.39846 * 120.17201 * 179.97438 * 20 18 2 22 22 C 1.37891 * 119.82489 * 179.75025 * 21 20 18 23 23 C 1.38412 * 120.16717 * 0.25583 * 22 21 20 24 24 C 1.38402 * 120.34971 * 359.97438 * 23 22 21 25 25 C 1.37883 * 120.17569 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.46915 * 299.99475 * 1 2 3 27 27 H 1.08994 * 109.47413 * 59.99739 * 1 2 3 28 28 H 1.09004 * 109.46784 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47220 * 55.00042 * 4 2 1 30 30 H 1.09003 * 109.46932 * 174.99925 * 4 2 1 31 31 H 1.09001 * 109.47259 * 299.99616 * 8 7 5 32 32 H 1.09002 * 109.47467 * 60.00259 * 8 7 5 33 33 H 1.09003 * 109.46881 * 299.99322 * 9 8 7 34 34 H 1.08997 * 109.47329 * 60.00366 * 9 8 7 35 35 H 0.97008 * 119.99317 * 180.02562 * 13 12 10 36 36 H 1.08002 * 120.09198 * 0.03340 * 21 20 18 37 37 H 1.07994 * 119.91964 * 180.28383 * 22 21 20 38 38 H 1.08001 * 119.81783 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.90871 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.08969 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6415 0.0569 2.4765 6 8 1.0135 1.0830 2.3637 7 8 1.9832 -0.3902 3.6952 8 6 1.5653 0.4102 4.8322 9 6 2.0428 -0.2530 6.1257 10 6 1.6085 0.5775 7.3059 11 1 1.0483 1.4875 7.1491 12 6 1.9272 0.1761 8.5859 13 7 1.5486 0.9012 9.6157 14 14 2.8967 -1.3972 8.8572 15 1 4.3495 -1.0896 8.8587 16 1 2.5159 -1.9945 10.1624 17 1 2.5954 -2.3587 7.7663 18 6 2.0323 -0.7103 -1.2306 19 8 2.2344 -1.9055 -1.2005 20 6 2.2775 0.0466 -2.4686 21 6 2.7441 -0.6089 -3.6124 22 6 2.9666 0.1064 -4.7701 23 6 2.7342 1.4705 -4.8003 24 6 2.2769 2.1272 -3.6711 25 6 2.0497 1.4260 -2.5059 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6055 -1.7199 1.2950 30 1 3.1264 -0.7995 1.2054 31 1 1.9990 1.4071 4.7538 32 1 0.4780 0.4867 4.8427 33 1 1.6093 -1.2500 6.2043 34 1 3.1301 -0.3291 6.1151 35 1 1.7731 0.6190 10.5163 36 1 2.9255 -1.6734 -3.5905 37 1 3.3225 -0.3991 -5.6556 38 1 2.9099 2.0252 -5.7102 39 1 2.0975 3.1918 -3.7028 40 1 1.6925 1.9397 -1.6256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732859643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:18 Heat of formation + Delta-G solvation = -131.243428 kcal Electronic energy + Delta-G solvation = -21762.135079 eV Core-core repulsion = 18312.880793 eV Total energy + Delta-G solvation = -3449.254286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.81317 -41.00840 -39.22219 -37.92461 -35.46530 -35.39882 -32.85852 -32.29056 -31.88474 -29.51906 -27.10666 -26.25853 -24.01976 -23.31367 -22.61366 -21.82012 -20.23919 -19.33122 -18.80748 -18.15920 -17.70091 -17.17886 -16.57792 -16.55489 -16.22370 -16.09641 -15.53235 -15.29557 -15.05474 -14.81253 -14.63021 -14.28119 -14.15631 -13.79408 -13.53868 -13.41178 -13.14885 -12.97900 -12.61702 -12.48925 -12.42807 -12.26952 -12.20063 -11.91822 -11.81940 -11.56590 -11.42854 -11.41368 -10.81802 -10.68474 -9.95748 -9.95166 -8.35172 -6.43008 -0.36737 0.42478 1.16222 1.34244 1.37514 1.39138 1.51787 1.67940 2.33594 2.84215 2.89563 2.99682 3.40304 3.77329 3.84494 3.87543 4.02397 4.14554 4.18135 4.19386 4.21851 4.34561 4.47968 4.52947 4.55089 4.58285 4.63134 4.78645 4.88854 4.95996 5.05048 5.09143 5.22213 5.28261 5.35827 5.46003 5.50082 5.51007 5.60272 5.95156 6.14904 6.39106 6.62964 6.71892 7.22050 8.80726 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.002499 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.077602 B =11199.837093 C =11526.131149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 H 0.117 0.883 4 C -0.099 4.099 5 C 0.459 3.541 6 O -0.529 6.529 7 O -0.365 6.365 8 C 0.094 3.906 9 C -0.006 4.006 10 C -0.541 4.541 11 H 0.037 0.963 12 C 0.011 3.989 13 N -0.943 5.943 14 Si 0.953 3.047 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.246 1.246 18 C 0.413 3.587 19 O -0.478 6.478 20 C -0.189 4.189 21 C -0.077 4.077 22 C -0.138 4.138 23 C -0.085 4.085 24 C -0.137 4.137 25 C -0.076 4.076 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.270 0.730 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -1.482 -32.198 32.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 H 0.135 0.865 4 C -0.136 4.136 5 C 0.304 3.696 6 O -0.419 6.419 7 O -0.281 6.281 8 C 0.020 3.980 9 C -0.043 4.043 10 C -0.579 4.579 11 H 0.055 0.945 12 C -0.187 4.187 13 N -0.583 5.583 14 Si 0.775 3.225 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.169 1.169 18 C 0.293 3.707 19 O -0.355 6.355 20 C -0.190 4.190 21 C -0.095 4.095 22 C -0.156 4.156 23 C -0.103 4.103 24 C -0.155 4.155 25 C -0.094 4.094 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.997 -1.785 -31.978 32.168 hybrid contribution 0.069 -0.136 0.912 0.925 sum 3.066 -1.922 -31.066 31.276 Atomic orbital electron populations 1.21831 0.91278 1.02890 1.04245 1.21451 0.99225 1.01917 0.91277 0.86513 1.21330 1.05121 1.00236 0.86953 1.24103 0.75887 0.84171 0.85430 1.90604 1.38292 1.25593 1.87453 1.86476 1.72339 1.53501 1.15827 1.22943 0.99150 0.93592 0.82282 1.19481 0.97646 0.96920 0.90287 1.21113 1.36514 1.09249 0.91024 0.94474 1.25944 0.96464 1.00941 0.95317 1.70043 1.47840 1.40946 0.99436 0.85618 0.79197 0.79329 0.78319 1.18792 1.20589 1.16933 1.22529 0.71759 0.87786 0.88654 1.90517 1.41360 1.17743 1.85908 1.20458 1.07559 0.95597 0.95388 1.21568 0.95017 1.00636 0.92329 1.21468 1.00854 0.94998 0.98243 1.21860 0.94581 0.94510 0.99322 1.21539 0.99738 1.01667 0.92547 1.21781 0.95646 0.92366 0.99637 0.91044 0.90133 0.92250 0.86133 0.85988 0.92164 0.92281 0.94824 0.94837 0.92063 0.85500 0.83285 0.82767 0.83008 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.92 71.98 0.64 -2.20 16 2 C -0.12 -2.35 1.81 -11.54 -0.02 -2.37 16 3 H 0.12 2.08 6.28 -2.39 -0.01 2.06 16 4 C -0.10 -2.24 4.80 29.85 0.14 -2.10 16 5 C 0.46 14.23 7.68 71.23 0.55 14.78 16 6 O -0.53 -18.32 13.72 21.95 0.30 -18.02 16 7 O -0.36 -13.31 10.22 -51.41 -0.53 -13.84 16 8 C 0.09 3.97 5.40 71.98 0.39 4.36 16 9 C -0.01 -0.28 4.42 29.85 0.13 -0.15 16 10 C -0.54 -31.32 9.66 25.60 0.25 -31.07 16 11 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 12 C 0.01 0.66 5.47 84.65 0.46 1.13 16 13 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 14 Si 0.95 43.70 27.47 68.60 1.88 45.58 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 17 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 18 C 0.41 8.40 6.17 28.03 0.17 8.57 16 19 O -0.48 -12.21 16.27 -2.96 -0.05 -12.26 16 20 C -0.19 -3.28 5.87 -20.15 -0.12 -3.40 16 21 C -0.08 -1.24 9.60 22.58 0.22 -1.02 16 22 C -0.14 -1.53 10.03 22.23 0.22 -1.31 16 23 C -0.08 -0.76 10.04 22.35 0.22 -0.54 16 24 C -0.14 -1.39 10.03 22.22 0.22 -1.17 16 25 C -0.08 -1.03 9.37 22.58 0.21 -0.82 16 26 H 0.07 1.71 5.96 -2.38 -0.01 1.70 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.12 2.61 8.02 -2.39 -0.02 2.59 16 30 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 2.58 8.13 -2.39 -0.02 2.56 16 32 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 33 H 0.03 1.57 7.20 -2.39 -0.02 1.55 16 34 H 0.03 1.53 7.57 -2.39 -0.02 1.52 16 35 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 36 H 0.13 2.09 7.65 -2.91 -0.02 2.07 16 37 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.15 0.50 8.06 -2.91 -0.02 0.47 16 39 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.14 1.63 6.35 -2.91 -0.02 1.61 16 Total: -1.00 -71.01 341.85 6.59 -64.42 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.98 Total: 9.73 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 3.70 Total: -17.31 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.30 Total: -58.32 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.27 Total: -44.12 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Total: -71.01 6.59 -64.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732859643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.818 kcal (2) G-P(sol) polarization free energy of solvation -71.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds