Wall clock time and date at job start Tue Mar 31 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47179 * 2 1 4 4 C 1.50703 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.33085 * 119.99574 * 124.72709 * 4 3 2 6 6 C 1.46952 * 119.99865 * 180.02562 * 5 4 3 7 7 O 1.21529 * 120.00199 * 359.97438 * 6 5 4 8 8 O 1.34804 * 119.99836 * 180.02562 * 6 5 4 9 9 C 1.45195 * 116.99954 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47425 * 180.02562 * 9 8 6 11 11 C 1.38299 * 119.93326 * 269.72908 * 10 9 8 12 12 C 1.38094 * 120.07343 * 179.72093 * 11 10 9 13 13 C 1.38883 * 119.92706 * 0.57279 * 12 11 10 14 14 O 1.35754 * 120.06806 * 179.68217 * 13 12 11 15 15 C 1.34831 * 116.99632 * 174.48134 * 14 13 12 16 16 H 1.07991 * 120.00561 * 5.06216 * 15 14 13 17 17 C 1.38664 * 119.99823 * 185.05265 * 15 14 13 18 18 N 1.31553 * 120.00060 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99612 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47319 * 89.99773 * 19 17 15 21 21 H 1.48505 * 109.46791 * 209.99642 * 19 17 15 22 22 H 1.48498 * 109.47716 * 329.99379 * 19 17 15 23 23 C 1.38875 * 119.86284 * 359.69573 * 13 12 11 24 24 C 1.38098 * 119.93029 * 0.02562 * 23 13 12 25 25 H 1.08998 * 109.47524 * 299.99676 * 1 2 3 26 26 H 1.09001 * 109.47279 * 60.00206 * 1 2 3 27 27 H 1.09003 * 109.47593 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47367 * 240.00082 * 2 1 3 29 29 H 1.09000 * 109.47294 * 120.00350 * 2 1 3 30 30 H 1.09004 * 109.47148 * 60.00258 * 3 2 1 31 31 H 1.08997 * 109.47541 * 299.99897 * 3 2 1 32 32 H 1.07992 * 120.00409 * 305.00693 * 4 3 2 33 33 H 1.07996 * 120.00215 * 359.97438 * 5 4 3 34 34 H 1.08999 * 109.47357 * 299.99972 * 9 8 6 35 35 H 1.09002 * 109.47026 * 59.99981 * 9 8 6 36 36 H 1.08008 * 119.96243 * 359.97371 * 11 10 9 37 37 H 1.07996 * 120.03919 * 180.27352 * 12 11 10 38 38 H 0.96994 * 119.99956 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.03828 * 179.97438 * 23 13 12 40 40 H 1.08005 * 119.96740 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2127 2.0989 -0.9465 6 6 5.6822 2.0984 -0.9462 7 8 6.2896 1.4990 -0.0809 8 8 6.3566 2.7638 -1.9053 9 6 7.8065 2.7205 -1.8423 10 6 8.3830 3.5146 -2.9860 11 6 8.6525 2.8926 -4.1914 12 6 9.1754 3.6187 -5.2432 13 6 9.4417 4.9727 -5.0857 14 8 9.9618 5.6879 -6.1157 15 6 10.0893 7.0178 -5.9345 16 1 9.8606 7.4565 -4.9746 17 6 10.5143 7.8225 -6.9808 18 7 10.6392 9.1201 -6.8039 19 14 10.9094 7.0638 -8.6414 20 1 9.6848 7.0452 -9.4811 21 1 11.9598 7.8684 -9.3158 22 1 11.3979 5.6750 -8.4477 23 6 9.1752 5.5933 -3.8723 24 6 8.6469 4.8628 -2.8261 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 4.0866 0.9060 0.7669 33 1 3.6730 2.6312 -1.7157 34 1 8.1421 3.1485 -0.8977 35 1 8.1425 1.6859 -1.9121 36 1 8.4500 1.8385 -4.3116 37 1 9.3815 3.1334 -6.1857 38 1 10.9361 9.6830 -7.5359 39 1 9.3816 6.6459 -3.7466 40 1 8.4398 5.3448 -1.8820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733449599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:08 Heat of formation + Delta-G solvation = -88.485712 kcal Electronic energy + Delta-G solvation = -21089.286604 eV Core-core repulsion = 17641.886432 eV Total energy + Delta-G solvation = -3447.400173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31211 -39.23285 -37.28588 -36.54566 -35.89433 -32.79499 -32.50510 -30.77398 -30.32559 -27.86042 -26.21954 -24.74381 -23.02504 -22.17912 -21.54578 -20.55675 -19.70008 -17.99685 -17.86228 -17.42003 -16.68718 -16.20839 -15.44655 -14.89514 -14.85505 -14.39193 -14.12346 -13.93287 -13.83407 -13.71941 -13.25236 -13.03143 -12.79732 -12.63050 -12.29555 -12.20941 -12.16971 -11.75974 -11.65760 -11.47840 -11.17463 -11.04266 -10.84226 -10.76885 -10.49260 -10.46901 -10.20496 -9.76564 -9.46431 -8.94306 -8.35405 -7.47960 -6.48838 -4.15553 0.93625 1.86775 2.05969 2.89432 2.97488 3.18492 3.22194 3.36107 4.17938 4.30149 4.46801 4.50511 4.60924 4.75355 4.80948 4.92428 5.03631 5.10884 5.14248 5.15002 5.18607 5.30836 5.37711 5.53283 5.58124 5.61325 5.66130 5.68247 5.83764 6.02186 6.04730 6.09379 6.23712 6.46060 6.49919 6.69307 6.92970 7.12780 7.19851 7.50794 7.72167 7.79706 7.95430 8.85639 9.46218 10.58271 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.002294 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.472112 B =12203.104858 C =12476.763409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.101 4.101 4 C -0.058 4.058 5 C -0.193 4.193 6 C 0.491 3.509 7 O -0.522 6.522 8 O -0.346 6.346 9 C 0.128 3.872 10 C -0.195 4.195 11 C -0.050 4.050 12 C -0.196 4.196 13 C 0.169 3.831 14 O -0.212 6.212 15 C -0.392 4.392 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.875 5.875 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.225 4.225 24 C -0.046 4.046 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.281 0.719 39 H 0.136 0.864 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 -15.114 11.415 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.138 4.138 4 C -0.077 4.077 5 C -0.211 4.211 6 C 0.338 3.662 7 O -0.414 6.414 8 O -0.263 6.263 9 C 0.055 3.945 10 C -0.196 4.196 11 C -0.069 4.069 12 C -0.215 4.215 13 C 0.116 3.884 14 O -0.116 6.116 15 C -0.467 4.467 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.512 5.512 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.244 4.244 24 C -0.065 4.065 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.154 0.846 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.898 -15.097 11.302 24.033 hybrid contribution 0.364 0.027 -0.608 0.709 sum -14.534 -15.070 10.694 23.510 Atomic orbital electron populations 1.21782 0.95338 1.01926 1.02036 1.21487 0.96115 0.95652 1.02728 1.20923 0.90996 0.98179 1.03702 1.23862 0.96340 0.92160 0.95303 1.22057 0.90077 1.05990 1.03020 1.21570 0.89809 0.75799 0.79057 1.90823 1.70826 1.42340 1.37415 1.86744 1.23107 1.66938 1.49475 1.21706 0.75087 0.99952 0.97707 1.18941 1.10332 0.94732 0.95624 1.20516 0.96311 0.98507 0.91552 1.20191 1.09085 0.92178 1.00031 1.19183 0.90475 0.91143 0.87610 1.83575 1.70039 1.21642 1.36335 1.20799 1.46774 0.77873 1.01242 0.87459 1.24495 0.95737 0.94475 0.99255 1.69640 1.44357 1.03293 1.33905 0.86167 0.78634 0.80072 0.81965 1.19780 1.20688 1.18313 1.21264 1.08081 1.01623 0.93440 1.20685 0.95433 0.92566 0.97796 0.92583 0.92507 0.92515 0.91541 0.91534 0.89647 0.90454 0.85435 0.84347 0.91086 0.91102 0.86688 0.86182 0.90907 0.84621 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.15 0.37 -0.34 16 2 C -0.12 -0.65 5.92 -26.74 -0.16 -0.81 16 3 C -0.10 -0.57 5.66 -27.88 -0.16 -0.73 16 4 C -0.06 -0.47 9.09 -36.10 -0.33 -0.80 16 5 C -0.19 -1.95 9.76 -37.85 -0.37 -2.32 16 6 C 0.49 6.78 7.91 34.26 0.27 7.05 16 7 O -0.52 -8.27 16.01 -19.29 -0.31 -8.58 16 8 O -0.35 -5.26 10.22 -40.78 -0.42 -5.68 16 9 C 0.13 1.91 5.60 36.00 0.20 2.12 16 10 C -0.20 -3.33 5.52 -104.58 -0.58 -3.91 16 11 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 12 C -0.20 -3.81 9.99 -39.40 -0.39 -4.21 16 13 C 0.17 3.84 6.65 -39.11 -0.26 3.58 16 14 O -0.21 -5.49 8.59 0.03 0.00 -5.49 16 15 C -0.39 -10.85 9.95 30.89 0.31 -10.54 16 16 H 0.11 3.03 5.44 -52.49 -0.29 2.74 16 17 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 18 N -0.87 -24.86 13.96 55.48 0.77 -24.08 16 19 Si 0.91 21.29 28.62 -169.99 -4.86 16.43 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.22 -4.79 9.17 -39.40 -0.36 -5.15 16 24 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.41 7.82 -51.93 -0.41 0.00 16 32 H 0.13 1.11 7.49 -52.49 -0.39 0.71 16 33 H 0.14 1.18 7.87 -52.49 -0.41 0.77 16 34 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 37 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 38 H 0.28 7.35 8.31 -40.82 -0.34 7.02 16 39 H 0.14 3.01 5.64 -52.48 -0.30 2.71 16 40 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -30.37 350.47 -7.43 -37.80 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.57 Total: 1.17 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.32 Total: -16.85 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.77 Total: -24.08 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.73 Total: -19.75 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.86 Total: 16.43 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.37 -7.43 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733449599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.686 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds