Wall clock time and date at job start Tue Mar 31 2020 05:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47179 * 2 1 4 4 C 1.50703 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.33085 * 119.99574 * 124.72709 * 4 3 2 6 6 C 1.46952 * 119.99865 * 180.02562 * 5 4 3 7 7 O 1.21529 * 120.00199 * 359.97438 * 6 5 4 8 8 O 1.34804 * 119.99836 * 180.02562 * 6 5 4 9 9 C 1.45195 * 116.99954 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47425 * 180.02562 * 9 8 6 11 11 C 1.38299 * 119.93326 * 269.72908 * 10 9 8 12 12 C 1.38094 * 120.07343 * 179.72093 * 11 10 9 13 13 C 1.38883 * 119.92706 * 0.57279 * 12 11 10 14 14 O 1.35754 * 120.06806 * 179.68217 * 13 12 11 15 15 C 1.34831 * 116.99632 * 174.48134 * 14 13 12 16 16 H 1.07991 * 120.00561 * 5.06216 * 15 14 13 17 17 C 1.38664 * 119.99823 * 185.05265 * 15 14 13 18 18 N 1.31553 * 120.00060 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99612 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47319 * 89.99773 * 19 17 15 21 21 H 1.48505 * 109.46791 * 209.99642 * 19 17 15 22 22 H 1.48498 * 109.47716 * 329.99379 * 19 17 15 23 23 C 1.38875 * 119.86284 * 359.69573 * 13 12 11 24 24 C 1.38098 * 119.93029 * 0.02562 * 23 13 12 25 25 H 1.08998 * 109.47524 * 299.99676 * 1 2 3 26 26 H 1.09001 * 109.47279 * 60.00206 * 1 2 3 27 27 H 1.09003 * 109.47593 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47367 * 240.00082 * 2 1 3 29 29 H 1.09000 * 109.47294 * 120.00350 * 2 1 3 30 30 H 1.09004 * 109.47148 * 60.00258 * 3 2 1 31 31 H 1.08997 * 109.47541 * 299.99897 * 3 2 1 32 32 H 1.07992 * 120.00409 * 305.00693 * 4 3 2 33 33 H 1.07996 * 120.00215 * 359.97438 * 5 4 3 34 34 H 1.08999 * 109.47357 * 299.99972 * 9 8 6 35 35 H 1.09002 * 109.47026 * 59.99981 * 9 8 6 36 36 H 1.08008 * 119.96243 * 359.97371 * 11 10 9 37 37 H 1.07996 * 120.03919 * 180.27352 * 12 11 10 38 38 H 0.96994 * 119.99956 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.03828 * 179.97438 * 23 13 12 40 40 H 1.08005 * 119.96740 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2127 2.0989 -0.9465 6 6 5.6822 2.0984 -0.9462 7 8 6.2896 1.4990 -0.0809 8 8 6.3566 2.7638 -1.9053 9 6 7.8065 2.7205 -1.8423 10 6 8.3830 3.5146 -2.9860 11 6 8.6525 2.8926 -4.1914 12 6 9.1754 3.6187 -5.2432 13 6 9.4417 4.9727 -5.0857 14 8 9.9618 5.6879 -6.1157 15 6 10.0893 7.0178 -5.9345 16 1 9.8606 7.4565 -4.9746 17 6 10.5143 7.8225 -6.9808 18 7 10.6392 9.1201 -6.8039 19 14 10.9094 7.0638 -8.6414 20 1 9.6848 7.0452 -9.4811 21 1 11.9598 7.8684 -9.3158 22 1 11.3979 5.6750 -8.4477 23 6 9.1752 5.5933 -3.8723 24 6 8.6469 4.8628 -2.8261 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 4.0866 0.9060 0.7669 33 1 3.6730 2.6312 -1.7157 34 1 8.1421 3.1485 -0.8977 35 1 8.1425 1.6859 -1.9121 36 1 8.4500 1.8385 -4.3116 37 1 9.3815 3.1334 -6.1857 38 1 10.9361 9.6830 -7.5359 39 1 9.3816 6.6459 -3.7466 40 1 8.4398 5.3448 -1.8820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733449599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:07 Heat of formation + Delta-G solvation = -103.693134 kcal Electronic energy + Delta-G solvation = -21089.946048 eV Core-core repulsion = 17641.886432 eV Total energy + Delta-G solvation = -3448.059616 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.46160 -40.87464 -38.73629 -37.57122 -36.80196 -34.51690 -33.42355 -32.24854 -31.88115 -28.64461 -27.75582 -26.31320 -23.90044 -23.75396 -22.20808 -22.00176 -20.51149 -19.87853 -19.17866 -18.87578 -17.79801 -17.40952 -16.63657 -16.30303 -15.91511 -15.75013 -15.68420 -15.34123 -14.94289 -14.57995 -14.47980 -14.35180 -14.14404 -13.98118 -13.76058 -13.39424 -13.13133 -12.70948 -12.65652 -12.52607 -12.38285 -12.28545 -12.08839 -11.96738 -11.70849 -11.65243 -11.46332 -11.31530 -10.92864 -10.46328 -9.88858 -9.16911 -8.52110 -6.25590 0.11071 0.36704 0.50241 1.32094 1.35513 1.52138 1.85888 1.95243 2.27087 2.75381 2.99505 3.11268 3.64731 3.85548 3.87851 3.97586 4.06618 4.12465 4.19855 4.24895 4.26611 4.40984 4.51506 4.63303 4.69549 4.70164 4.87806 4.90418 4.98843 5.15813 5.18168 5.21437 5.27167 5.35963 5.44541 5.45285 5.49525 5.51139 5.62954 5.74089 5.83978 6.14246 6.72874 6.81433 7.52696 8.59022 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.002294 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.472112 B =12203.104858 C =12476.763409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.099 4.099 4 C -0.030 4.030 5 C -0.215 4.215 6 C 0.491 3.509 7 O -0.549 6.549 8 O -0.357 6.357 9 C 0.128 3.872 10 C -0.174 4.174 11 C -0.043 4.043 12 C -0.192 4.192 13 C 0.133 3.867 14 O -0.239 6.239 15 C -0.403 4.403 16 H 0.083 0.917 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.262 1.262 23 C -0.240 4.240 24 C -0.049 4.049 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.137 0.863 38 H 0.286 0.714 39 H 0.114 0.886 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.096 -17.911 12.070 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.136 4.136 4 C -0.049 4.049 5 C -0.234 4.234 6 C 0.339 3.661 7 O -0.442 6.442 8 O -0.274 6.274 9 C 0.055 3.945 10 C -0.175 4.175 11 C -0.061 4.061 12 C -0.211 4.211 13 C 0.083 3.917 14 O -0.145 6.145 15 C -0.479 4.479 16 H 0.100 0.900 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.259 4.259 24 C -0.067 4.067 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.140 0.860 33 H 0.172 0.828 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.174 0.826 37 H 0.155 0.845 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.740 -17.923 11.988 27.298 hybrid contribution 0.721 0.628 -0.461 1.062 sum -16.018 -17.296 11.527 26.241 Atomic orbital electron populations 1.21778 0.94690 1.02207 1.02365 1.21486 0.96654 0.95208 1.02627 1.21001 0.88955 0.98758 1.04863 1.24098 0.97697 0.89542 0.93563 1.22088 0.87979 1.08427 1.04920 1.22162 0.90964 0.74823 0.78121 1.90811 1.71511 1.43608 1.38296 1.86713 1.22812 1.67549 1.50276 1.21680 0.75471 1.00509 0.96839 1.19301 1.07732 0.94163 0.96271 1.20972 0.94384 1.00277 0.90437 1.20521 1.08163 0.90796 1.01628 1.19736 0.91919 0.92472 0.87601 1.83524 1.72821 1.20504 1.37698 1.20726 1.47282 0.79197 1.00663 0.89965 1.25310 0.95784 0.94881 1.02812 1.69723 1.46493 1.04498 1.35249 0.85205 0.78876 0.78987 0.77586 1.18994 1.19209 1.18572 1.21272 1.09160 1.01078 0.94377 1.20941 0.94613 0.93269 0.97841 0.92043 0.92410 0.92325 0.92053 0.91324 0.88110 0.89604 0.85980 0.82810 0.90297 0.89373 0.82622 0.84541 0.90464 0.86827 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 71.98 0.71 -0.32 16 2 C -0.12 -0.99 5.92 30.59 0.18 -0.81 16 3 C -0.10 -0.83 5.66 29.85 0.17 -0.66 16 4 C -0.03 -0.42 9.09 24.53 0.22 -0.20 16 5 C -0.22 -3.85 9.76 23.40 0.23 -3.62 16 6 C 0.49 12.49 7.91 70.10 0.55 13.04 16 7 O -0.55 -16.33 16.01 19.74 0.32 -16.01 16 8 O -0.36 -9.89 10.22 -57.16 -0.58 -10.47 16 9 C 0.13 3.41 5.60 71.23 0.40 3.81 16 10 C -0.17 -5.46 5.52 -19.84 -0.11 -5.57 16 11 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 12 C -0.19 -7.18 9.99 22.39 0.22 -6.96 16 13 C 0.13 6.13 6.65 22.58 0.15 6.28 16 14 O -0.24 -12.79 8.59 -22.79 -0.20 -12.99 16 15 C -0.40 -23.50 9.95 67.92 0.68 -22.83 16 16 H 0.08 5.03 5.44 -2.92 -0.02 5.01 16 17 C 0.01 0.64 5.49 84.84 0.47 1.10 16 18 N -0.92 -54.44 13.96 21.62 0.30 -54.13 16 19 Si 0.97 44.83 28.62 68.60 1.96 46.79 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 23 C -0.24 -10.50 9.17 22.39 0.21 -10.30 16 24 C -0.05 -1.72 9.69 22.25 0.22 -1.50 16 25 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.63 7.82 -2.39 -0.02 0.61 16 32 H 0.12 1.85 7.49 -2.91 -0.02 1.83 16 33 H 0.15 2.23 7.87 -2.91 -0.02 2.20 16 34 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 35 H 0.09 2.10 8.08 -2.39 -0.02 2.08 16 36 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 38 H 0.29 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.11 5.44 5.64 -2.91 -0.02 5.42 16 40 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -68.16 350.47 7.34 -60.82 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.03 Total: 15.64 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 4.51 Total: -29.64 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.30 Total: -54.13 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.46 Total: -39.48 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.96 Total: 46.79 kcal Total: -68.16 7.34 -60.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733449599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.873 kcal (2) G-P(sol) polarization free energy of solvation -68.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds