Wall clock time and date at job start Tue Mar 31 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35689 * 116.99682 * 2 1 4 4 C 1.38612 * 120.15926 * 0.02562 * 3 2 1 5 5 C 1.38122 * 120.10780 * 179.97438 * 4 3 2 6 6 C 1.38583 * 120.44283 * 0.02562 * 5 4 3 7 7 C 1.37737 * 120.32434 * 0.02562 * 6 5 4 8 8 C 1.39958 * 119.87520 * 359.68541 * 7 6 5 9 9 C 1.46904 * 120.21416 * 180.31800 * 8 7 6 10 10 C 1.50697 * 119.99982 * 255.26992 * 9 8 7 11 11 C 1.35119 * 119.99807 * 75.27409 * 9 8 7 12 12 C 1.41755 * 120.00311 * 359.97438 * 11 9 8 13 13 O 1.21655 * 120.00182 * 0.02562 * 12 11 9 14 14 O 1.34930 * 120.00372 * 180.02562 * 12 11 9 15 15 C 1.42898 * 117.00502 * 180.02562 * 14 12 11 16 16 H 1.08996 * 109.47147 * 29.99536 * 15 14 12 17 17 C 1.53004 * 109.46941 * 270.00130 * 15 14 12 18 18 C 1.50696 * 109.47519 * 150.00071 * 15 14 12 19 19 H 1.08001 * 120.00320 * 34.99184 * 18 15 14 20 20 C 1.37874 * 120.00288 * 214.99793 * 18 15 14 21 21 N 1.31508 * 120.00226 * 184.91416 * 20 18 15 22 22 Si 1.86802 * 119.99711 * 4.91208 * 20 18 15 23 23 H 1.48498 * 109.47269 * 84.83742 * 22 20 18 24 24 H 1.48507 * 109.47122 * 204.83373 * 22 20 18 25 25 H 1.48503 * 109.47138 * 324.83035 * 22 20 18 26 26 H 1.09002 * 109.47233 * 299.99221 * 1 2 3 27 27 H 1.08992 * 109.47099 * 59.99981 * 1 2 3 28 28 H 1.09004 * 109.46589 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.94604 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.77900 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.83777 * 179.97438 * 6 5 4 32 32 H 1.07996 * 120.06257 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47213 * 89.99754 * 10 9 8 34 34 H 1.09000 * 109.47371 * 210.00097 * 10 9 8 35 35 H 1.09001 * 109.47113 * 329.99938 * 10 9 8 36 36 H 1.08002 * 119.99741 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.47526 * 175.03687 * 17 15 14 38 38 H 1.09007 * 109.47037 * 295.03088 * 17 15 14 39 39 H 1.08991 * 109.47510 * 55.02650 * 17 15 14 40 40 H 0.97007 * 119.99828 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2932 2.3736 0.0005 5 6 1.9213 3.6037 0.0011 6 6 3.3047 3.6858 0.0005 7 6 4.0693 2.5401 -0.0011 8 6 3.4469 1.2866 0.0045 9 6 4.2551 0.0599 0.0099 10 6 4.3926 -0.7574 -1.2487 11 6 4.8753 -0.3356 1.1434 12 6 4.7464 0.4335 2.3272 13 8 4.0771 1.4494 2.3228 14 8 5.3661 0.0389 3.4590 15 6 5.1923 0.8615 4.6145 16 1 4.2195 1.3509 4.5691 17 6 6.2949 1.9214 4.6564 18 6 5.2682 0.0084 5.8544 19 1 5.9377 -0.8384 5.8872 20 6 4.4828 0.3089 6.9471 21 7 4.6182 -0.3749 8.0622 22 14 3.2265 1.6875 6.8434 23 1 1.9665 1.1658 6.2558 24 1 2.9565 2.2145 8.2053 25 1 3.7579 2.7781 5.9870 26 1 -0.3634 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 0.2146 2.3190 0.0005 30 1 1.3304 4.5077 0.0011 31 1 3.7856 4.6528 0.0005 32 1 5.1471 2.6090 -0.0019 33 1 5.2556 -0.4088 -1.8159 34 1 4.5293 -1.8068 -0.9874 35 1 3.4922 -0.6479 -1.8532 36 1 5.4698 -1.2372 1.1472 37 1 6.1126 2.6028 5.4874 38 1 7.2613 1.4354 4.7905 39 1 6.2966 2.4812 3.7212 40 1 4.0653 -0.1637 8.8308 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:16 Heat of formation + Delta-G solvation = -99.468471 kcal Electronic energy + Delta-G solvation = -23477.536458 eV Core-core repulsion = 20029.660037 eV Total energy + Delta-G solvation = -3447.876421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.68591 -40.85125 -38.58343 -37.64444 -35.90079 -35.14280 -32.63692 -31.32801 -30.87074 -29.35112 -28.13131 -27.47871 -24.81284 -23.59907 -22.95471 -21.78383 -20.27030 -19.48884 -18.69337 -18.50701 -17.58476 -17.12259 -16.72684 -16.62992 -16.40324 -15.78610 -15.31308 -14.99211 -14.83368 -14.69454 -14.52222 -14.27427 -13.94057 -13.67302 -13.50591 -13.32647 -13.19021 -13.02676 -12.90059 -12.76809 -12.58861 -12.45019 -12.04639 -11.96262 -11.75064 -11.42044 -11.33194 -11.09750 -10.87763 -10.26847 -9.57904 -9.00156 -8.48443 -6.57252 -0.10652 0.45392 0.54776 1.21488 1.24167 1.35993 2.12864 2.17515 2.26683 2.35543 2.81692 2.91941 3.54935 3.92396 3.99804 4.08064 4.23650 4.26642 4.35078 4.39571 4.42695 4.47749 4.55620 4.58405 4.63680 4.68098 4.72628 4.78236 4.83604 4.95230 5.04530 5.19687 5.30903 5.31926 5.38890 5.43844 5.50207 5.61642 5.74391 5.86308 6.20373 6.45349 6.50360 7.02586 7.16464 8.67380 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016456 B = 0.005273 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.065116 B = 5308.557344 C = 5613.772324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.122 3.878 4 C -0.216 4.216 5 C -0.085 4.085 6 C -0.163 4.163 7 C -0.054 4.054 8 C -0.099 4.099 9 C 0.053 3.947 10 C -0.115 4.115 11 C -0.226 4.226 12 C 0.474 3.526 13 O -0.534 6.534 14 O -0.360 6.360 15 C 0.184 3.816 16 H 0.032 0.968 17 C -0.145 4.145 18 C -0.531 4.531 19 H 0.046 0.954 20 C 0.035 3.965 21 N -0.924 5.924 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.264 1.264 25 H -0.253 1.253 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.159 0.841 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 5.037 -22.829 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.076 3.924 4 C -0.235 4.235 5 C -0.103 4.103 6 C -0.181 4.181 7 C -0.073 4.073 8 C -0.100 4.100 9 C 0.052 3.948 10 C -0.171 4.171 11 C -0.245 4.245 12 C 0.324 3.676 13 O -0.428 6.428 14 O -0.277 6.277 15 C 0.129 3.871 16 H 0.050 0.950 17 C -0.203 4.203 18 C -0.568 4.568 19 H 0.064 0.936 20 C -0.166 4.166 21 N -0.562 5.562 22 Si 0.753 3.247 23 H -0.199 1.199 24 H -0.188 1.188 25 H -0.176 1.176 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.136 0.864 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.142 0.858 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.177 0.823 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.938 5.104 -22.578 24.165 hybrid contribution -0.689 0.481 0.939 1.260 sum -7.627 5.585 -21.639 23.614 Atomic orbital electron populations 1.23311 0.76655 1.05450 1.01996 1.85978 1.23267 1.26856 1.88630 1.19132 0.91109 0.85115 0.97007 1.21374 1.00810 0.92121 1.09187 1.21293 0.94792 0.97644 0.96577 1.21161 0.94354 0.98649 1.03909 1.21014 0.99711 0.90828 0.95704 1.18310 0.90302 0.94024 1.07371 1.21517 0.86908 0.91086 0.95281 1.21059 1.04249 0.99416 0.92355 1.21401 1.09110 1.04054 0.89948 1.20798 0.76796 0.84438 0.85598 1.90844 1.39525 1.26833 1.85578 1.86314 1.67273 1.54294 1.19788 1.20288 0.95966 0.89649 0.81160 0.95047 1.22137 0.99707 0.97955 1.00461 1.20973 1.24610 1.14840 0.96420 0.93593 1.25641 0.97862 0.98542 0.94536 1.69962 1.40848 1.42078 1.03354 0.86008 0.79709 0.80478 0.78512 1.19909 1.18822 1.17648 0.93167 0.90640 0.86413 0.83556 0.83407 0.84167 0.85762 0.87476 0.88958 0.90144 0.82300 0.92048 0.92202 0.93457 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -9.21 9.95 -90.08 -0.90 -10.11 16 3 C 0.12 3.60 6.71 22.89 0.15 3.75 16 4 C -0.22 -5.52 9.03 22.33 0.20 -5.32 16 5 C -0.09 -2.04 10.03 22.32 0.22 -1.82 16 6 C -0.16 -4.20 10.02 22.23 0.22 -3.98 16 7 C -0.05 -1.59 7.96 22.57 0.18 -1.41 16 8 C -0.10 -3.03 3.29 -20.06 -0.07 -3.10 16 9 C 0.05 1.47 5.01 -18.31 -0.09 1.38 16 10 C -0.11 -2.03 10.04 71.24 0.72 -1.32 16 11 C -0.23 -7.48 9.62 22.42 0.22 -7.26 16 12 C 0.47 20.61 7.62 68.69 0.52 21.13 16 13 O -0.53 -24.63 11.91 19.33 0.23 -24.40 16 14 O -0.36 -18.02 9.73 -58.46 -0.57 -18.59 16 15 C 0.18 9.79 2.17 29.85 0.06 9.86 16 16 H 0.03 1.75 4.27 -2.39 -0.01 1.74 16 17 C -0.14 -6.69 9.51 71.98 0.68 -6.01 16 18 C -0.53 -32.30 9.23 25.60 0.24 -32.06 16 19 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 20 C 0.03 2.08 5.47 84.65 0.46 2.55 16 21 N -0.92 -57.61 13.96 21.45 0.30 -57.31 16 22 Si 0.93 46.20 26.99 68.60 1.85 48.05 16 23 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.25 -12.13 6.82 99.48 0.68 -11.45 16 26 H 0.05 0.96 7.66 -2.39 -0.02 0.94 16 27 H 0.08 1.02 7.66 -2.39 -0.02 1.00 16 28 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.15 2.89 6.30 -2.91 -0.02 2.88 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.12 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 35 H 0.08 1.37 8.11 -2.39 -0.02 1.35 16 36 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 37 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.28 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -76.11 340.48 6.76 -69.35 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.00 Total: 15.12 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 4.84 Total: -22.12 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.30 Total: -57.31 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -1.24 Total: -53.09 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.85 Total: 48.05 kcal Total: -76.11 6.76 -69.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.118 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds