Wall clock time and date at job start Tue Mar 31 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 C 1.50700 * 109.47405 * 270.28028 * 8 7 6 10 10 O 1.20820 * 119.99963 * 359.97438 * 9 8 7 11 11 O 1.34229 * 119.99797 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99604 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47060 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47276 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47097 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99792 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99964 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99948 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46811 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47110 * 119.99799 * 19 17 15 22 22 H 1.48498 * 109.47280 * 239.99938 * 19 17 15 23 23 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 24 24 C 1.37892 * 120.16928 * 359.71584 * 23 7 6 25 25 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46978 * 299.99439 * 1 2 3 27 27 H 1.08999 * 109.47274 * 59.99793 * 1 2 3 28 28 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 29 29 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 30 30 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 31 31 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 32 32 H 1.09004 * 109.47073 * 299.99193 * 12 11 9 33 33 H 1.09001 * 109.47625 * 59.99330 * 12 11 9 34 34 H 1.09004 * 109.46697 * 299.99642 * 13 12 11 35 35 H 1.08996 * 109.47378 * 59.99814 * 13 12 11 36 36 H 1.08994 * 109.46740 * 299.99927 * 14 13 12 37 37 H 1.09005 * 109.46623 * 59.99769 * 14 13 12 38 38 H 0.97000 * 120.00261 * 180.02562 * 18 17 15 39 39 H 1.07999 * 119.91764 * 179.69813 * 23 7 6 40 40 H 1.08001 * 120.08323 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 6 4.6331 -5.4121 -1.4246 10 8 4.2405 -4.7315 -2.3424 11 8 5.2926 -6.5550 -1.6707 12 6 5.4995 -6.9099 -3.0634 13 6 6.2634 -8.2330 -3.1445 14 6 6.4808 -8.6073 -4.6121 15 6 7.2338 -9.9103 -4.6920 16 1 7.5275 -10.4205 -3.7866 17 6 7.5477 -10.4508 -5.9208 18 7 7.1905 -9.8291 -7.0233 19 14 8.4805 -12.0663 -6.0199 20 1 8.7636 -12.5592 -4.6480 21 1 7.6598 -13.0680 -6.7468 22 1 9.7599 -11.8556 -6.7436 23 6 2.2439 -3.6777 -0.0029 24 6 1.5473 -2.4877 -0.0019 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 4.1856 -0.3457 0.0012 29 1 5.4036 -2.4818 -0.0110 30 1 5.3337 -4.8486 0.5109 31 1 3.7922 -5.7387 0.5095 32 1 4.5342 -7.0163 -3.5584 33 1 6.0761 -6.1270 -3.5561 34 1 7.2287 -8.1261 -2.6496 35 1 5.6872 -9.0161 -2.6518 36 1 5.5154 -8.7142 -5.1066 37 1 7.0569 -7.8242 -5.1052 38 1 7.4110 -10.2096 -7.8879 39 1 1.7082 -4.6154 -0.0043 40 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733867373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:58 Heat of formation + Delta-G solvation = -119.030897 kcal Electronic energy + Delta-G solvation = -21189.123686 eV Core-core repulsion = 17740.398975 eV Total energy + Delta-G solvation = -3448.724711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67547 -40.04658 -38.57748 -36.49577 -34.03028 -33.55230 -31.81888 -31.62994 -30.44937 -28.38288 -26.89754 -23.90610 -23.02845 -22.81962 -20.84439 -20.35593 -20.02945 -17.57556 -17.44451 -16.65977 -16.54874 -15.97241 -15.94522 -15.44161 -15.32213 -14.73485 -14.50266 -14.39404 -14.10456 -13.90758 -13.31892 -12.82218 -12.65843 -12.56081 -12.40770 -12.19451 -12.14772 -11.98221 -11.82526 -11.34030 -11.00794 -10.68317 -10.66748 -10.42922 -10.42665 -10.11113 -9.75943 -9.55763 -9.32182 -9.19988 -9.13191 -8.41473 -6.05872 -4.09035 0.25477 1.05828 1.99389 2.27270 2.85676 3.28353 3.35859 3.39969 3.51662 3.67238 4.21528 4.32827 4.41448 4.54806 4.64100 4.79034 4.92004 4.94704 4.99918 5.08669 5.18180 5.20612 5.30148 5.45933 5.52782 5.54150 5.59389 5.65778 5.89823 5.97706 6.03332 6.14303 6.43993 6.50432 6.53216 6.80809 6.95149 7.15175 7.57727 7.68249 7.86856 7.92505 8.33314 8.97516 9.55458 11.05576 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043482 B = 0.002088 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.795876 B =13408.643093 C =13576.064392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.396 3.604 3 O -0.462 6.462 4 C -0.174 4.174 5 C -0.059 4.059 6 C -0.115 4.115 7 C -0.039 4.039 8 C -0.082 4.082 9 C 0.457 3.543 10 O -0.504 6.504 11 O -0.358 6.358 12 C 0.069 3.931 13 C -0.109 4.109 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.116 4.116 24 C -0.072 4.072 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.131 0.869 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.648 15.551 18.409 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.275 3.725 3 O -0.338 6.338 4 C -0.175 4.175 5 C -0.077 4.077 6 C -0.133 4.133 7 C -0.039 4.039 8 C -0.119 4.119 9 C 0.299 3.701 10 O -0.392 6.392 11 O -0.275 6.275 12 C -0.004 4.004 13 C -0.147 4.147 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.146 4.146 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.134 4.134 24 C -0.090 4.090 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.149 0.851 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.426 16.263 17.902 27.192 hybrid contribution 0.466 -0.990 -0.442 1.181 sum -11.960 15.273 17.460 26.099 Atomic orbital electron populations 1.22246 0.93748 1.04930 1.05003 1.22523 0.91715 0.87599 0.70651 1.90541 1.72132 1.34394 1.36716 1.20533 0.94673 0.94798 1.07511 1.21374 0.93166 0.98591 0.94566 1.21037 1.00408 0.91517 1.00331 1.19624 0.93844 0.93747 0.96730 1.20396 1.03403 0.95780 0.92362 1.23318 0.75347 0.79460 0.91954 1.90697 1.47839 1.53830 1.46803 1.86490 1.68489 1.39081 1.33418 1.23519 1.01149 0.99145 0.76604 1.21770 0.98734 0.92226 1.01927 1.19062 0.97385 0.96800 0.88142 1.21205 1.36023 1.06321 0.92383 0.92353 1.25042 0.96030 0.97683 0.95800 1.69976 1.46771 1.39081 0.97503 0.86484 0.79579 0.83500 0.78134 1.19665 1.20966 1.20970 1.21021 0.93367 0.98559 1.00460 1.21461 1.00102 0.91292 0.96182 0.89695 0.88740 0.88664 0.84793 0.85174 0.86426 0.86399 0.91498 0.91505 0.92120 0.92125 0.96233 0.96231 0.92926 0.85133 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.06 10.19 36.00 0.37 -0.69 16 2 C 0.40 3.64 7.23 -30.69 -0.22 3.42 16 3 O -0.46 -5.81 17.09 5.57 0.10 -5.72 16 4 C -0.17 -1.64 5.87 -105.06 -0.62 -2.25 16 5 C -0.06 -0.59 9.60 -39.11 -0.38 -0.97 16 6 C -0.12 -1.11 9.68 -39.65 -0.38 -1.50 16 7 C -0.04 -0.37 4.38 -104.50 -0.46 -0.83 16 8 C -0.08 -0.72 5.93 -29.04 -0.17 -0.90 16 9 C 0.46 6.36 7.95 36.01 0.29 6.65 16 10 O -0.50 -8.65 15.78 -18.74 -0.30 -8.95 16 11 O -0.36 -5.63 10.22 -39.26 -0.40 -6.04 16 12 C 0.07 1.24 5.47 37.16 0.20 1.44 16 13 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 19 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C -0.12 -1.00 9.68 -39.64 -0.38 -1.38 16 24 C -0.07 -0.57 9.45 -39.10 -0.37 -0.94 16 25 H 0.08 0.28 5.61 -51.93 -0.29 -0.01 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.13 1.29 7.65 -52.49 -0.40 0.89 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.12 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.12 0.76 8.08 -51.92 -0.42 0.34 16 32 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 33 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.14 0.64 5.93 -52.49 -0.31 0.33 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -34.27 350.37 -8.04 -42.31 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.61 Total: -4.05 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.82 Total: -13.26 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.60 Total: -20.70 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.27 -8.04 -42.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733867373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.720 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds