Wall clock time and date at job start Tue Mar 31 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 C 1.50700 * 109.47405 * 270.28028 * 8 7 6 10 10 O 1.20820 * 119.99963 * 359.97438 * 9 8 7 11 11 O 1.34229 * 119.99797 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99604 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47060 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47276 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47097 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99792 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99964 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99948 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00192 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46811 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47110 * 119.99799 * 19 17 15 22 22 H 1.48498 * 109.47280 * 239.99938 * 19 17 15 23 23 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 24 24 C 1.37892 * 120.16928 * 359.71584 * 23 7 6 25 25 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46978 * 299.99439 * 1 2 3 27 27 H 1.08999 * 109.47274 * 59.99793 * 1 2 3 28 28 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 29 29 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 30 30 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 31 31 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 32 32 H 1.09004 * 109.47073 * 299.99193 * 12 11 9 33 33 H 1.09001 * 109.47625 * 59.99330 * 12 11 9 34 34 H 1.09004 * 109.46697 * 299.99642 * 13 12 11 35 35 H 1.08996 * 109.47378 * 59.99814 * 13 12 11 36 36 H 1.08994 * 109.46740 * 299.99927 * 14 13 12 37 37 H 1.09005 * 109.46623 * 59.99769 * 14 13 12 38 38 H 0.97000 * 120.00261 * 180.02562 * 18 17 15 39 39 H 1.07999 * 119.91764 * 179.69813 * 23 7 6 40 40 H 1.08001 * 120.08323 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 6 4.6331 -5.4121 -1.4246 10 8 4.2405 -4.7315 -2.3424 11 8 5.2926 -6.5550 -1.6707 12 6 5.4995 -6.9099 -3.0634 13 6 6.2634 -8.2330 -3.1445 14 6 6.4808 -8.6073 -4.6121 15 6 7.2338 -9.9103 -4.6920 16 1 7.5275 -10.4205 -3.7866 17 6 7.5477 -10.4508 -5.9208 18 7 7.1905 -9.8291 -7.0233 19 14 8.4805 -12.0663 -6.0199 20 1 8.7636 -12.5592 -4.6480 21 1 7.6598 -13.0680 -6.7468 22 1 9.7599 -11.8556 -6.7436 23 6 2.2439 -3.6777 -0.0029 24 6 1.5473 -2.4877 -0.0019 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 4.1856 -0.3457 0.0012 29 1 5.4036 -2.4818 -0.0110 30 1 5.3337 -4.8486 0.5109 31 1 3.7922 -5.7387 0.5095 32 1 4.5342 -7.0163 -3.5584 33 1 6.0761 -6.1270 -3.5561 34 1 7.2287 -8.1261 -2.6496 35 1 5.6872 -9.0161 -2.6518 36 1 5.5154 -8.7142 -5.1066 37 1 7.0569 -7.8242 -5.1052 38 1 7.4110 -10.2096 -7.8879 39 1 1.7082 -4.6154 -0.0043 40 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733867373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:58 Heat of formation + Delta-G solvation = -137.802813 kcal Electronic energy + Delta-G solvation = -21189.937697 eV Core-core repulsion = 17740.398975 eV Total energy + Delta-G solvation = -3449.538723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.67557 -40.91977 -39.36149 -37.77860 -35.93143 -34.34065 -33.64876 -32.35732 -31.09020 -29.42439 -28.41989 -25.39853 -24.07442 -23.58843 -22.16357 -21.86262 -20.73887 -18.83164 -18.43305 -18.14236 -17.81015 -17.20165 -16.76964 -16.50747 -16.18015 -16.02511 -15.77403 -15.27309 -15.02093 -14.69550 -14.57641 -14.11439 -13.94511 -13.75094 -13.46419 -13.06322 -13.00973 -12.98823 -12.83273 -12.76620 -12.50078 -12.33972 -12.07292 -11.96363 -11.80448 -11.42630 -11.40481 -11.21644 -10.82072 -10.58547 -9.98750 -9.88588 -8.22317 -6.33838 -0.45567 0.39099 1.18030 1.25750 1.41680 1.41888 1.55499 1.79576 2.41213 2.79100 3.06687 3.11687 3.49691 3.73032 3.83581 3.94593 4.00057 4.07083 4.08619 4.25426 4.33032 4.42050 4.51456 4.56873 4.63462 4.64491 4.80219 4.83513 4.92255 5.02465 5.08356 5.08591 5.25266 5.38479 5.43846 5.46611 5.54517 5.63563 5.80061 5.86920 6.18737 6.48293 6.71254 6.82858 7.35884 8.90075 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043482 B = 0.002088 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.795876 B =13408.643093 C =13576.064392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.395 3.605 3 O -0.508 6.508 4 C -0.190 4.190 5 C -0.080 4.080 6 C -0.127 4.127 7 C -0.053 4.053 8 C -0.071 4.071 9 C 0.456 3.544 10 O -0.541 6.541 11 O -0.356 6.356 12 C 0.079 3.921 13 C -0.094 4.094 14 C 0.024 3.976 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.970 3.030 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.279 1.279 23 C -0.123 4.123 24 C -0.066 4.066 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.069 0.931 36 H -0.004 1.004 37 H -0.005 1.005 38 H 0.264 0.736 39 H 0.153 0.847 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 14.162 20.243 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.276 3.724 3 O -0.387 6.387 4 C -0.191 4.191 5 C -0.098 4.098 6 C -0.145 4.145 7 C -0.053 4.053 8 C -0.108 4.108 9 C 0.301 3.699 10 O -0.430 6.430 11 O -0.273 6.273 12 C 0.005 3.995 13 C -0.131 4.131 14 C -0.013 4.013 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.182 1.182 21 H -0.204 1.204 22 H -0.205 1.205 23 C -0.141 4.141 24 C -0.083 4.083 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.143 0.857 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.169 0.831 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.171 0.829 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -13.387 14.867 19.767 28.124 hybrid contribution 0.717 -0.497 -0.996 1.324 sum -12.670 14.370 18.772 26.821 Atomic orbital electron populations 1.22291 0.90324 1.06855 1.05879 1.23153 0.93588 0.86774 0.68836 1.90525 1.73351 1.35712 1.39118 1.20789 0.94602 0.95858 1.07881 1.21483 0.94047 0.98604 0.95709 1.21211 1.01033 0.91672 1.00549 1.19814 0.94590 0.93754 0.97121 1.20551 1.05271 0.96098 0.88831 1.24362 0.73754 0.78057 0.93729 1.90691 1.49289 1.54589 1.48460 1.86481 1.69133 1.40338 1.31335 1.23088 1.00387 0.97758 0.78234 1.21455 0.99651 0.93717 0.98317 1.18950 0.95478 0.95591 0.91274 1.21661 1.36143 1.07234 0.92872 0.91540 1.26035 0.97000 1.01674 0.95408 1.70109 1.48098 1.41062 0.98188 0.85325 0.77980 0.78587 0.78704 1.18247 1.20411 1.20519 1.21408 0.93226 0.99807 0.99633 1.21833 1.01802 0.90223 0.94452 0.87256 0.87403 0.87992 0.85706 0.84426 0.83903 0.83110 0.91995 0.92317 0.91439 0.91243 0.98516 0.98681 0.92708 0.82892 0.81241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 10.19 71.24 0.73 -0.91 16 2 C 0.39 7.10 7.23 28.03 0.20 7.30 16 3 O -0.51 -13.28 17.09 -2.97 -0.05 -13.33 16 4 C -0.19 -3.46 5.87 -20.15 -0.12 -3.57 16 5 C -0.08 -1.66 9.60 22.58 0.22 -1.44 16 6 C -0.13 -2.40 9.68 22.23 0.22 -2.19 16 7 C -0.05 -0.90 4.38 -19.79 -0.09 -0.99 16 8 C -0.07 -1.05 5.93 29.10 0.17 -0.87 16 9 C 0.46 11.95 7.95 71.24 0.57 12.52 16 10 O -0.54 -18.28 15.78 21.98 0.35 -17.93 16 11 O -0.36 -10.64 10.22 -51.41 -0.53 -11.17 16 12 C 0.08 2.83 5.47 71.98 0.39 3.23 16 13 C -0.09 -3.79 5.53 30.60 0.17 -3.62 16 14 C 0.02 1.27 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.33 9.11 25.60 0.23 -30.10 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 18 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 19 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 C -0.12 -1.78 9.68 22.23 0.22 -1.57 16 24 C -0.07 -0.86 9.45 22.58 0.21 -0.65 16 25 H 0.11 0.33 5.61 -2.39 -0.01 0.32 16 26 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.12 2.66 7.65 -2.91 -0.02 2.64 16 29 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 30 H 0.14 1.44 8.08 -2.39 -0.02 1.42 16 31 H 0.15 1.29 8.08 -2.38 -0.02 1.27 16 32 H 0.06 2.27 8.13 -2.38 -0.02 2.25 16 33 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 34 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 38 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.17 0.93 5.93 -2.91 -0.02 0.91 16 Total: -1.00 -76.14 350.37 6.85 -69.29 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.03 Total: 5.04 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 3.73 Total: -21.19 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.28 Total: -56.43 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.23 Total: -42.42 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -76.14 6.85 -69.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733867373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.512 kcal (2) G-P(sol) polarization free energy of solvation -76.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds