Wall clock time and date at job start Tue Mar 31 2020 06:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48504 * 109.47080 * 269.99750 * 3 2 1 5 5 H 1.48495 * 109.47347 * 30.00181 * 3 2 1 6 6 H 1.48508 * 109.46999 * 150.00168 * 3 2 1 7 7 C 1.37880 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00338 * 167.38712 * 7 2 1 9 9 C 1.50706 * 119.99821 * 347.39498 * 7 2 1 10 10 C 1.52996 * 115.54701 * 324.71220 * 9 7 2 11 11 O 1.45201 * 109.47555 * 306.37085 * 10 9 7 12 12 C 1.34227 * 116.99880 * 178.57100 * 11 10 9 13 13 O 1.20819 * 120.00694 * 4.23570 * 12 11 10 14 14 C 1.50705 * 119.99542 * 184.23055 * 12 11 10 15 15 H 1.09004 * 109.42247 * 24.44970 * 14 12 11 16 16 C 1.53026 * 109.42257 * 144.27113 * 14 12 11 17 17 C 1.53381 * 109.72990 * 191.79269 * 16 14 12 18 18 C 1.50881 * 108.19528 * 309.45566 * 17 16 14 19 19 C 1.34574 * 128.32699 * 196.68650 * 18 17 16 20 20 N 1.35202 * 107.61611 * 179.83583 * 19 18 17 21 21 H 0.96997 * 126.00074 * 180.02562 * 20 19 18 22 22 N 1.40314 * 107.99234 * 0.03923 * 20 19 18 23 23 C 1.30124 * 108.12546 * 0.02637 * 22 20 19 24 24 C 1.50951 * 128.28848 * 179.87102 * 23 22 20 25 25 C 1.52999 * 117.49815 * 110.38325 * 9 7 2 26 26 C 1.53002 * 117.49884 * 179.04460 * 9 7 2 27 27 H 0.97003 * 120.00070 * 5.04383 * 1 2 3 28 28 H 1.09004 * 109.47061 * 186.36797 * 10 9 7 29 29 H 1.09002 * 109.47432 * 66.37344 * 10 9 7 30 30 H 1.09005 * 109.42925 * 311.87170 * 16 14 12 31 31 H 1.09000 * 109.42857 * 71.71393 * 16 14 12 32 32 H 1.09006 * 109.72788 * 189.77946 * 17 16 14 33 33 H 1.08993 * 109.70671 * 69.12882 * 17 16 14 34 34 H 1.07999 * 126.19290 * 359.81663 * 19 18 17 35 35 H 1.08997 * 109.71593 * 77.06387 * 24 23 22 36 36 H 1.09002 * 109.75162 * 316.43853 * 24 23 22 37 37 H 1.09003 * 117.49464 * 214.99554 * 25 9 7 38 38 H 1.08996 * 117.50023 * 0.02562 * 25 9 7 39 39 H 1.09003 * 117.49518 * 359.97438 * 26 9 7 40 40 H 1.08997 * 117.49723 * 144.99002 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0650 -1.2053 -0.2048 9 6 1.2782 -2.4836 0.2837 10 6 0.1469 -2.3914 1.3096 11 8 0.6505 -1.7933 2.5331 12 6 -0.2297 -1.6130 3.5304 13 8 -1.3639 -2.0129 3.4149 14 6 0.1970 -0.9116 4.7942 15 1 1.0466 -0.2632 4.5798 16 6 -0.9642 -0.0680 5.3249 17 6 -0.4606 0.8700 6.4290 18 6 0.3184 0.0482 7.4262 19 6 0.6732 0.3764 8.6822 20 7 1.3575 -0.6683 9.2002 21 1 1.7366 -0.7157 10.0918 22 7 1.4230 -1.6716 8.2215 23 6 0.8030 -1.2434 7.1606 24 6 0.6027 -1.9537 5.8438 25 6 1.1017 -3.4655 -0.8763 26 6 2.0944 -3.7772 0.2465 27 1 -0.4850 0.8368 -0.0739 28 1 -0.2324 -3.3907 1.5230 29 1 -0.6579 -1.7753 0.9086 30 1 -1.3847 0.5229 4.5110 31 1 -1.7339 -0.7248 5.7302 32 1 -1.3082 1.3432 6.9248 33 1 0.1861 1.6332 5.9962 34 1 0.4516 1.3060 9.1852 35 1 -0.1853 -2.7000 5.9447 36 1 1.5313 -2.4379 5.5415 37 1 0.1796 -4.0459 -0.9085 38 1 1.5113 -3.1790 -1.8449 39 1 3.1567 -3.6955 0.0160 40 1 1.8255 -4.5624 0.9529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:26 Heat of formation + Delta-G solvation = 3.181713 kcal Electronic energy + Delta-G solvation = -23244.017117 eV Core-core repulsion = 19832.884693 eV Total energy + Delta-G solvation = -3411.132424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54488 -39.64962 -37.03061 -36.03409 -34.89707 -32.27765 -32.14244 -30.78532 -28.58767 -26.77601 -25.46670 -24.71546 -22.47148 -21.21341 -21.10125 -19.93871 -19.15968 -18.70923 -17.70162 -16.83346 -16.56128 -15.47315 -15.38186 -15.10400 -14.60217 -14.26436 -14.02786 -13.75823 -13.58772 -13.11859 -13.00416 -12.78483 -12.10820 -11.95358 -11.77291 -11.56799 -11.34040 -11.16326 -10.95504 -10.83057 -10.76412 -10.48305 -10.31783 -10.27038 -9.84790 -9.48156 -9.42802 -9.31787 -9.09689 -8.74080 -8.50279 -8.08886 -6.04357 -4.06731 1.80264 2.64680 2.71439 2.99640 3.27437 3.35200 3.40617 3.56223 4.37684 4.46434 4.63227 4.87265 4.95162 5.07432 5.13400 5.35257 5.40553 5.50959 5.55735 5.59302 5.68831 5.84106 5.93093 6.00012 6.07877 6.14201 6.19676 6.24320 6.39450 6.49848 6.58686 6.64770 6.67401 6.84435 7.00139 7.17977 7.28168 7.42041 7.58751 7.60463 7.90939 8.36299 8.69228 8.88287 9.52481 10.97971 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.004663 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.320599 B = 6003.867992 C = 6633.356402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.076 3.924 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.483 4.483 8 H 0.062 0.938 9 C 0.049 3.951 10 C 0.115 3.885 11 O -0.324 6.324 12 C 0.463 3.537 13 O -0.525 6.525 14 C -0.076 4.076 15 H 0.105 0.895 16 C -0.102 4.102 17 C -0.040 4.040 18 C -0.233 4.233 19 C 0.058 3.942 20 N -0.488 5.488 21 H 0.438 0.562 22 N -0.287 5.287 23 C 0.092 3.908 24 C -0.028 4.028 25 C -0.193 4.193 26 C -0.209 4.209 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.176 0.824 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 2.076 15.763 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.048 3.952 10 C 0.042 3.958 11 O -0.238 6.238 12 C 0.305 3.695 13 O -0.415 6.415 14 C -0.096 4.096 15 H 0.124 0.876 16 C -0.140 4.140 17 C -0.078 4.078 18 C -0.244 4.244 19 C -0.088 4.088 20 N -0.196 5.196 21 H 0.281 0.719 22 N -0.110 5.110 23 C -0.077 4.077 24 C -0.067 4.067 25 C -0.231 4.231 26 C -0.247 4.247 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.193 0.807 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.180 1.124 16.271 16.310 hybrid contribution 0.150 1.454 0.053 1.462 sum -0.030 2.577 16.324 16.526 Atomic orbital electron populations 1.69812 1.06080 1.26942 1.49131 1.24914 0.94717 0.99089 0.93955 0.86580 0.80175 0.83144 0.78133 1.20736 1.20994 1.19590 1.20409 0.94553 0.89009 1.48010 0.91996 1.18881 0.94196 0.89456 0.92648 1.22783 0.98724 0.94555 0.79776 1.86494 1.40796 1.72717 1.23794 1.23210 0.83949 0.76847 0.85469 1.90576 1.21185 1.48005 1.81744 1.20923 1.01305 0.97292 0.90065 0.87641 1.21453 0.96485 0.97815 0.98227 1.20021 0.98113 0.96216 0.93444 1.20189 1.10492 0.97437 0.96276 1.22035 0.97502 0.94051 0.95171 1.46310 1.46342 1.12143 1.14832 0.71883 1.77020 1.23809 1.11929 0.98221 1.22182 0.96256 0.94314 0.94903 1.19979 1.03487 0.96241 0.87029 1.22965 0.99107 1.06236 0.94817 1.22964 0.96852 1.02175 1.02671 0.92722 0.95498 0.87078 0.90532 0.90602 0.90716 0.90783 0.80734 0.89017 0.88770 0.91506 0.89821 0.90339 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.27 10.86 55.43 0.60 -23.67 16 2 C 0.08 2.04 5.16 -17.82 -0.09 1.95 16 3 Si 0.89 20.74 29.56 -169.99 -5.02 15.72 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.48 -13.05 8.76 -34.44 -0.30 -13.35 16 8 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 9 C 0.05 1.22 2.11 -155.66 -0.33 0.89 16 10 C 0.11 2.83 4.55 37.16 0.17 3.00 16 11 O -0.32 -7.64 9.86 -39.25 -0.39 -8.02 16 12 C 0.46 9.54 6.90 36.01 0.25 9.79 16 13 O -0.52 -11.82 16.23 -18.74 -0.30 -12.13 16 14 C -0.08 -1.21 2.56 -91.56 -0.23 -1.45 16 15 H 0.11 1.68 8.10 -51.93 -0.42 1.26 16 16 C -0.10 -1.43 4.71 -26.52 -0.12 -1.55 16 17 C -0.04 -0.44 6.28 -27.60 -0.17 -0.62 16 18 C -0.23 -2.80 5.89 -104.98 -0.62 -3.41 16 19 C 0.06 0.54 11.95 -17.36 -0.21 0.33 16 20 N -0.49 -4.87 7.37 30.35 0.22 -4.65 16 21 H 0.44 2.77 8.96 -182.44 -1.64 1.13 16 22 N -0.29 -3.99 12.68 33.75 0.43 -3.56 16 23 C 0.09 1.29 7.10 -82.34 -0.58 0.70 16 24 C -0.03 -0.41 5.59 -27.57 -0.15 -0.56 16 25 C -0.19 -4.34 9.96 -26.69 -0.27 -4.61 16 26 C -0.21 -4.56 9.92 -26.69 -0.26 -4.83 16 27 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 28 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 29 H 0.11 3.02 6.08 -51.93 -0.32 2.71 16 30 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 31 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.09 1.31 8.12 -51.93 -0.42 0.89 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 39 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -31.64 336.04 -9.31 -40.96 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.98 Total: 4.00 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.93 Total: -13.71 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 1.25 Total: -31.88 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.69 Total: -20.15 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.64 -9.31 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.139 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds