Wall clock time and date at job start Tue Mar 31 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48504 * 109.47080 * 269.99750 * 3 2 1 5 5 H 1.48495 * 109.47347 * 30.00181 * 3 2 1 6 6 H 1.48508 * 109.46999 * 150.00168 * 3 2 1 7 7 C 1.37880 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00338 * 167.38712 * 7 2 1 9 9 C 1.50706 * 119.99821 * 347.39498 * 7 2 1 10 10 C 1.52996 * 115.54701 * 324.71220 * 9 7 2 11 11 O 1.45201 * 109.47555 * 306.37085 * 10 9 7 12 12 C 1.34227 * 116.99880 * 178.57100 * 11 10 9 13 13 O 1.20819 * 120.00694 * 4.23570 * 12 11 10 14 14 C 1.50705 * 119.99542 * 184.23055 * 12 11 10 15 15 H 1.09004 * 109.42247 * 24.44970 * 14 12 11 16 16 C 1.53026 * 109.42257 * 144.27113 * 14 12 11 17 17 C 1.53381 * 109.72990 * 191.79269 * 16 14 12 18 18 C 1.50881 * 108.19528 * 309.45566 * 17 16 14 19 19 C 1.34574 * 128.32699 * 196.68650 * 18 17 16 20 20 N 1.35202 * 107.61611 * 179.83583 * 19 18 17 21 21 H 0.96997 * 126.00074 * 180.02562 * 20 19 18 22 22 N 1.40314 * 107.99234 * 0.03923 * 20 19 18 23 23 C 1.30124 * 108.12546 * 0.02637 * 22 20 19 24 24 C 1.50951 * 128.28848 * 179.87102 * 23 22 20 25 25 C 1.52999 * 117.49815 * 110.38325 * 9 7 2 26 26 C 1.53002 * 117.49884 * 179.04460 * 9 7 2 27 27 H 0.97003 * 120.00070 * 5.04383 * 1 2 3 28 28 H 1.09004 * 109.47061 * 186.36797 * 10 9 7 29 29 H 1.09002 * 109.47432 * 66.37344 * 10 9 7 30 30 H 1.09005 * 109.42925 * 311.87170 * 16 14 12 31 31 H 1.09000 * 109.42857 * 71.71393 * 16 14 12 32 32 H 1.09006 * 109.72788 * 189.77946 * 17 16 14 33 33 H 1.08993 * 109.70671 * 69.12882 * 17 16 14 34 34 H 1.07999 * 126.19290 * 359.81663 * 19 18 17 35 35 H 1.08997 * 109.71593 * 77.06387 * 24 23 22 36 36 H 1.09002 * 109.75162 * 316.43853 * 24 23 22 37 37 H 1.09003 * 117.49464 * 214.99554 * 25 9 7 38 38 H 1.08996 * 117.50023 * 0.02562 * 25 9 7 39 39 H 1.09003 * 117.49518 * 359.97438 * 26 9 7 40 40 H 1.08997 * 117.49723 * 144.99002 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0650 -1.2053 -0.2048 9 6 1.2782 -2.4836 0.2837 10 6 0.1469 -2.3914 1.3096 11 8 0.6505 -1.7933 2.5331 12 6 -0.2297 -1.6130 3.5304 13 8 -1.3639 -2.0129 3.4149 14 6 0.1970 -0.9116 4.7942 15 1 1.0466 -0.2632 4.5798 16 6 -0.9642 -0.0680 5.3249 17 6 -0.4606 0.8700 6.4290 18 6 0.3184 0.0482 7.4262 19 6 0.6732 0.3764 8.6822 20 7 1.3575 -0.6683 9.2002 21 1 1.7366 -0.7157 10.0918 22 7 1.4230 -1.6716 8.2215 23 6 0.8030 -1.2434 7.1606 24 6 0.6027 -1.9537 5.8438 25 6 1.1017 -3.4655 -0.8763 26 6 2.0944 -3.7772 0.2465 27 1 -0.4850 0.8368 -0.0739 28 1 -0.2324 -3.3907 1.5230 29 1 -0.6579 -1.7753 0.9086 30 1 -1.3847 0.5229 4.5110 31 1 -1.7339 -0.7248 5.7302 32 1 -1.3082 1.3432 6.9248 33 1 0.1861 1.6332 5.9962 34 1 0.4516 1.3060 9.1852 35 1 -0.1853 -2.7000 5.9447 36 1 1.5313 -2.4379 5.5415 37 1 0.1796 -4.0459 -0.9085 38 1 1.5113 -3.1790 -1.8449 39 1 3.1567 -3.6955 0.0160 40 1 1.8255 -4.5624 0.9529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:25 Heat of formation + Delta-G solvation = -14.527921 kcal Electronic energy + Delta-G solvation = -23244.785064 eV Core-core repulsion = 19832.884693 eV Total energy + Delta-G solvation = -3411.900371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.46521 -41.29832 -38.73081 -37.40377 -36.63872 -34.16458 -33.22203 -31.82558 -29.56204 -28.55435 -27.42333 -25.99674 -23.66885 -22.97875 -21.96886 -21.36104 -21.09138 -19.82056 -18.71315 -18.45083 -18.27186 -17.19609 -16.99464 -16.50267 -16.13968 -15.66283 -15.33466 -14.93926 -14.87776 -14.66504 -14.14572 -13.91345 -13.66235 -13.63148 -13.34150 -12.99872 -12.82630 -12.75729 -12.41859 -12.33506 -12.28108 -12.12082 -11.93897 -11.62979 -11.34124 -11.28132 -11.08736 -11.06172 -10.63682 -10.37828 -10.03323 -9.33774 -8.05853 -6.14790 0.97577 1.29283 1.42725 1.46152 1.56414 1.74784 1.84661 2.13267 2.44505 3.03544 3.41686 3.57477 3.62255 3.82605 3.90123 4.09781 4.22052 4.27229 4.32698 4.40124 4.42618 4.58222 4.60892 4.64643 4.76189 4.78964 4.92058 4.92365 4.96534 5.05111 5.13932 5.19931 5.23380 5.32069 5.41965 5.52783 5.64908 5.84509 5.84681 6.36049 6.51663 6.72345 6.79987 6.99007 7.46622 8.95038 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.004663 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.320599 B = 6003.867992 C = 6633.356402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.035 3.965 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.502 4.502 8 H 0.055 0.945 9 C 0.010 3.990 10 C 0.124 3.876 11 O -0.340 6.340 12 C 0.458 3.542 13 O -0.548 6.548 14 C -0.066 4.066 15 H 0.105 0.895 16 C -0.100 4.100 17 C -0.029 4.029 18 C -0.260 4.260 19 C 0.084 3.916 20 N -0.475 5.475 21 H 0.454 0.546 22 N -0.323 5.323 23 C 0.072 3.928 24 C -0.022 4.022 25 C -0.187 4.187 26 C -0.188 4.188 27 H 0.262 0.738 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.224 0.776 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 3.349 17.790 18.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.165 4.165 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.009 3.991 10 C 0.050 3.950 11 O -0.254 6.254 12 C 0.303 3.697 13 O -0.440 6.440 14 C -0.086 4.086 15 H 0.124 0.876 16 C -0.137 4.137 17 C -0.067 4.067 18 C -0.271 4.271 19 C -0.062 4.062 20 N -0.185 5.185 21 H 0.301 0.699 22 N -0.146 5.146 23 C -0.095 4.095 24 C -0.061 4.061 25 C -0.225 4.225 26 C -0.225 4.225 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.240 0.760 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.481 2.379 18.310 18.470 hybrid contribution -0.056 1.014 -0.521 1.142 sum 0.424 3.393 17.788 18.114 Atomic orbital electron populations 1.69950 1.07183 1.27385 1.49893 1.25563 0.95394 1.01877 0.93704 0.85709 0.79051 0.79635 0.78275 1.20181 1.20526 1.19281 1.20641 0.94406 0.90452 1.48401 0.92684 1.19024 0.95618 0.90138 0.94272 1.22499 0.97949 0.94139 0.80375 1.86503 1.41806 1.73068 1.24045 1.24177 0.83405 0.76198 0.85963 1.90548 1.22102 1.49085 1.82225 1.21004 1.02120 0.97409 0.88049 0.87646 1.21466 0.95536 0.97858 0.98867 1.19968 0.99061 0.95334 0.92288 1.20373 1.11977 0.96975 0.97802 1.22692 0.94765 0.94727 0.94025 1.46367 1.45674 1.11495 1.14988 0.69940 1.76932 1.24829 1.13807 0.99062 1.22062 0.97438 0.95462 0.94548 1.19816 1.03029 0.95731 0.87533 1.22966 0.99991 1.05135 0.94370 1.22981 0.96921 1.00469 1.02106 0.92903 0.94905 0.90066 0.91832 0.91043 0.88023 0.90241 0.76003 0.89505 0.89237 0.90153 0.90000 0.89692 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.88 10.86 21.45 0.23 -50.65 16 2 C 0.04 1.89 5.16 84.66 0.44 2.33 16 3 Si 0.95 42.65 29.56 68.60 2.03 44.67 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.50 -27.40 8.76 25.60 0.22 -27.18 16 8 H 0.05 2.99 7.85 -2.91 -0.02 2.96 16 9 C 0.01 0.50 2.11 -52.93 -0.11 0.39 16 10 C 0.12 6.26 4.55 71.98 0.33 6.59 16 11 O -0.34 -16.45 9.86 -51.38 -0.51 -16.96 16 12 C 0.46 19.49 6.90 71.24 0.49 19.98 16 13 O -0.55 -25.55 16.23 21.98 0.36 -25.20 16 14 C -0.07 -2.14 2.56 -11.41 -0.03 -2.17 16 15 H 0.11 3.39 8.10 -2.38 -0.02 3.37 16 16 C -0.10 -2.75 4.71 30.73 0.14 -2.60 16 17 C -0.03 -0.57 6.28 30.03 0.19 -0.38 16 18 C -0.26 -5.59 5.89 -20.10 -0.12 -5.71 16 19 C 0.08 1.24 11.95 83.33 1.00 2.23 16 20 N -0.47 -8.07 7.37 -57.88 -0.43 -8.49 16 21 H 0.45 4.28 8.96 -213.19 -1.91 2.37 16 22 N -0.32 -8.52 12.68 -47.13 -0.60 -9.12 16 23 C 0.07 1.95 7.10 43.44 0.31 2.26 16 24 C -0.02 -0.64 5.59 30.05 0.17 -0.47 16 25 C -0.19 -8.30 9.96 30.62 0.30 -8.00 16 26 C -0.19 -7.99 9.92 30.62 0.30 -7.69 16 27 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 28 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 29 H 0.08 4.59 6.08 -2.39 -0.01 4.58 16 30 H 0.06 1.89 8.09 -2.38 -0.02 1.87 16 31 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 32 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.22 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.09 2.56 8.12 -2.39 -0.02 2.55 16 36 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 39 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -69.34 336.04 3.87 -65.47 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -0.85 Total: 20.69 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 3.63 Total: -20.42 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -0.79 Total: -68.26 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -0.15 Total: -42.16 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -69.34 3.87 -65.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.944 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds