Wall clock time and date at job start Tue Mar 31 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48502 * 109.47268 * 89.99663 * 3 2 1 5 5 H 1.48503 * 109.47086 * 209.99442 * 3 2 1 6 6 H 1.48497 * 109.47021 * 329.99603 * 3 2 1 7 7 C 1.37881 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00166 * 185.82770 * 7 2 1 9 9 C 1.50698 * 119.99883 * 5.82924 * 7 2 1 10 10 C 1.52997 * 115.55189 * 270.08450 * 9 7 2 11 11 O 1.45198 * 109.47432 * 294.41679 * 10 9 7 12 12 C 1.34222 * 117.00311 * 184.53967 * 11 10 9 13 13 O 1.20830 * 119.99988 * 4.93122 * 12 11 10 14 14 C 1.50703 * 120.00139 * 184.93356 * 12 11 10 15 15 H 1.09000 * 109.42232 * 310.57948 * 14 12 11 16 16 C 1.53027 * 109.42531 * 190.74855 * 14 12 11 17 17 C 1.53380 * 109.72248 * 168.19122 * 16 14 12 18 18 C 1.50878 * 108.19535 * 50.53358 * 17 16 14 19 19 C 1.34578 * 128.32822 * 163.25915 * 18 17 16 20 20 N 1.35198 * 107.61755 * 180.29285 * 19 18 17 21 21 H 0.97008 * 126.00024 * 179.97438 * 20 19 18 22 22 N 1.40316 * 107.99500 * 359.95506 * 20 19 18 23 23 C 1.30123 * 108.12256 * 359.96572 * 22 20 19 24 24 C 1.50945 * 128.28949 * 180.13317 * 23 22 20 25 25 C 1.53002 * 117.49849 * 124.41255 * 9 7 2 26 26 C 1.53007 * 117.49858 * 55.75527 * 9 7 2 27 27 H 0.97000 * 120.00195 * 354.99350 * 1 2 3 28 28 H 1.09003 * 109.47082 * 54.41627 * 10 9 7 29 29 H 1.08999 * 109.47159 * 174.41268 * 10 9 7 30 30 H 1.09005 * 109.42916 * 288.26642 * 16 14 12 31 31 H 1.08996 * 109.42973 * 48.10946 * 16 14 12 32 32 H 1.09002 * 109.71683 * 290.86387 * 17 16 14 33 33 H 1.08997 * 109.72279 * 170.21406 * 17 16 14 34 34 H 1.07999 * 126.18964 * 0.32302 * 19 18 17 35 35 H 1.09009 * 109.71321 * 43.66750 * 24 23 22 36 36 H 1.09002 * 109.71912 * 283.03128 * 24 23 22 37 37 H 1.08995 * 117.49949 * 0.02562 * 25 9 7 38 38 H 1.09006 * 117.49929 * 145.02112 * 25 9 7 39 39 H 1.09005 * 117.49872 * 214.98153 * 26 9 7 40 40 H 1.08999 * 117.49666 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4401 -0.6999 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0804 -1.1965 0.0955 9 6 1.2568 -2.4958 -0.1314 10 6 0.8062 -3.1343 1.1839 11 8 1.9717 -3.5324 1.9530 12 6 1.7487 -4.1966 3.0978 13 8 0.6236 -4.5156 3.4018 14 6 2.9014 -4.5443 4.0041 15 1 3.6931 -5.0133 3.4199 16 6 2.4237 -5.5168 5.0848 17 6 3.6327 -6.1028 5.8247 18 6 4.5204 -4.9613 6.2551 19 6 5.5030 -4.9690 7.1746 20 7 6.0200 -3.7210 7.2314 21 1 6.7438 -3.4294 7.8078 22 7 5.3262 -2.9220 6.3100 23 6 4.4307 -3.6632 5.7252 24 6 3.4393 -3.2658 4.6586 25 6 1.6673 -3.4342 -1.2681 26 6 0.3453 -2.6668 -1.3484 27 1 -0.4850 0.8368 0.0733 28 1 0.2221 -2.4137 1.7562 29 1 0.1944 -4.0110 0.9714 30 1 1.7868 -4.9872 5.7933 31 1 1.8562 -6.3237 4.6213 32 1 4.1844 -6.7671 5.1595 33 1 3.2948 -6.6565 6.7007 34 1 5.8212 -5.8184 7.7608 35 1 3.9339 -2.6487 3.9084 36 1 2.6174 -2.7096 5.1093 37 1 2.4784 -3.1102 -1.9201 38 1 1.6160 -4.5065 -1.0789 39 1 -0.5752 -3.2344 -1.2120 40 1 0.2868 -1.8378 -2.0537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:28 Heat of formation + Delta-G solvation = -18.976901 kcal Electronic energy + Delta-G solvation = -22905.776433 eV Core-core repulsion = 19493.683140 eV Total energy + Delta-G solvation = -3412.093293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45454 -41.40813 -38.75148 -37.42763 -36.78098 -33.99656 -33.18986 -31.82686 -29.55232 -28.76568 -27.36780 -26.01205 -23.67775 -22.93047 -21.94721 -21.37166 -21.17321 -19.84854 -18.75605 -18.35243 -18.17267 -17.38871 -17.05785 -16.53683 -16.13766 -15.71470 -15.22124 -15.14405 -14.84933 -14.60315 -14.20372 -13.85747 -13.69829 -13.65853 -13.48538 -12.94428 -12.86697 -12.86001 -12.39444 -12.38644 -12.20019 -12.07418 -11.90720 -11.64486 -11.61416 -11.31020 -11.19038 -10.79001 -10.46044 -10.38003 -10.07361 -9.30992 -8.12185 -6.23919 1.00161 1.18954 1.41027 1.42747 1.52445 1.76913 1.81495 2.07220 2.42301 3.14710 3.35374 3.47586 3.65438 3.82251 3.91733 4.08775 4.15723 4.26578 4.35953 4.41024 4.46216 4.49271 4.62883 4.66301 4.67750 4.81033 4.85040 4.98408 4.99129 5.07324 5.20100 5.20449 5.27710 5.37562 5.47531 5.60887 5.69210 5.73740 5.76168 6.37210 6.54081 6.74517 6.81139 6.84617 7.44444 8.95619 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017526 B = 0.004296 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.219909 B = 6516.181008 C = 7626.450378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.026 3.974 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.282 1.282 7 C -0.503 4.503 8 H 0.054 0.946 9 C 0.002 3.998 10 C 0.128 3.872 11 O -0.346 6.346 12 C 0.456 3.544 13 O -0.543 6.543 14 C -0.062 4.062 15 H 0.126 0.874 16 C -0.099 4.099 17 C -0.027 4.027 18 C -0.258 4.258 19 C 0.083 3.917 20 N -0.477 5.477 21 H 0.452 0.548 22 N -0.330 5.330 23 C 0.071 3.929 24 C -0.029 4.029 25 C -0.179 4.179 26 C -0.141 4.141 27 H 0.261 0.739 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.225 0.775 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.888 -13.696 14.223 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.208 1.208 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.002 3.998 10 C 0.054 3.946 11 O -0.262 6.262 12 C 0.301 3.699 13 O -0.434 6.434 14 C -0.081 4.081 15 H 0.144 0.856 16 C -0.136 4.136 17 C -0.065 4.065 18 C -0.270 4.270 19 C -0.064 4.064 20 N -0.187 5.187 21 H 0.299 0.701 22 N -0.154 5.154 23 C -0.096 4.096 24 C -0.068 4.068 25 C -0.217 4.217 26 C -0.179 4.179 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.241 0.759 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.901 -12.487 14.276 21.876 hybrid contribution -0.210 0.894 0.065 0.921 sum 10.690 -11.593 14.340 21.315 Atomic orbital electron populations 1.70076 1.07029 1.27500 1.50110 1.25674 0.95589 1.01925 0.94267 0.85699 0.79013 0.79735 0.78145 1.20520 1.19053 1.20756 1.20627 0.92917 0.89758 1.50780 0.92766 1.18890 1.00840 0.94750 0.85319 1.22518 0.84201 0.95859 0.92031 1.86552 1.39778 1.66526 1.33331 1.24381 0.91080 0.73861 0.80613 1.90588 1.26477 1.52452 1.73841 1.21074 0.94266 0.97833 0.94954 0.85607 1.21479 0.98598 0.97722 0.95834 1.20005 0.92354 0.93596 1.00545 1.20448 1.05293 0.96125 1.05092 1.22752 0.94736 0.89896 0.98978 1.46403 1.31501 1.07422 1.33388 0.70093 1.76982 1.11018 1.19632 1.07745 1.22101 0.96048 0.93788 0.97702 1.19838 0.95946 0.96119 0.94916 1.23034 0.98129 0.96596 1.03897 1.22429 0.92860 1.00951 1.01658 0.92979 0.94283 0.93179 0.92070 0.90166 0.89245 0.88164 0.75853 0.89753 0.90588 0.89757 0.89091 0.90436 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.37 12.69 21.45 0.27 -52.10 16 2 C 0.03 1.43 5.37 84.66 0.45 1.88 16 3 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.50 -27.90 8.80 25.60 0.23 -27.67 16 8 H 0.05 3.02 7.82 -2.91 -0.02 3.00 16 9 C 0.00 0.12 1.69 -52.93 -0.09 0.03 16 10 C 0.13 6.15 5.38 71.98 0.39 6.54 16 11 O -0.35 -15.18 10.16 -51.34 -0.52 -15.70 16 12 C 0.46 17.15 7.14 71.24 0.51 17.66 16 13 O -0.54 -22.75 15.60 21.95 0.34 -22.41 16 14 C -0.06 -1.70 2.57 -11.41 -0.03 -1.73 16 15 H 0.13 3.02 8.10 -2.39 -0.02 3.00 16 16 C -0.10 -2.18 4.57 30.73 0.14 -2.04 16 17 C -0.03 -0.41 6.28 30.03 0.19 -0.22 16 18 C -0.26 -4.95 5.89 -20.10 -0.12 -5.07 16 19 C 0.08 1.09 11.95 83.34 1.00 2.09 16 20 N -0.48 -8.10 7.37 -57.88 -0.43 -8.52 16 21 H 0.45 4.43 8.96 -213.17 -1.91 2.52 16 22 N -0.33 -9.04 12.68 -47.14 -0.60 -9.63 16 23 C 0.07 1.89 7.10 43.44 0.31 2.20 16 24 C -0.03 -0.85 5.59 30.05 0.17 -0.69 16 25 C -0.18 -7.68 9.96 30.62 0.30 -7.38 16 26 C -0.14 -6.64 9.12 30.62 0.28 -6.36 16 27 H 0.26 14.39 8.32 -92.71 -0.77 13.62 16 28 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 30 H 0.06 1.51 8.10 -2.38 -0.02 1.49 16 31 H 0.08 1.75 7.87 -2.39 -0.02 1.73 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.23 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 36 H 0.08 2.39 8.12 -2.39 -0.02 2.37 16 37 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 39 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 40 H 0.07 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -71.39 339.19 3.96 -67.43 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -0.86 Total: 15.61 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 3.72 Total: -20.75 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -0.75 Total: -70.26 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.18 Total: -38.11 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.39 3.96 -67.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.455 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds