Wall clock time and date at job start Tue Mar 31 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47218 * 2 1 4 4 C 1.50703 * 109.46898 * 120.00312 * 2 1 3 5 5 O 1.20827 * 120.00143 * 120.00589 * 4 2 1 6 6 O 1.34230 * 119.99859 * 299.99486 * 4 2 1 7 7 C 1.45206 * 116.99857 * 180.02562 * 6 4 2 8 8 C 1.50702 * 109.47055 * 180.02562 * 7 6 4 9 9 C 1.38304 * 119.92883 * 269.72933 * 8 7 6 10 10 C 1.38106 * 120.06324 * 179.72511 * 9 8 7 11 11 C 1.38877 * 119.93099 * 0.56884 * 10 9 8 12 12 O 1.35748 * 120.06773 * 179.68367 * 11 10 9 13 13 C 1.34840 * 116.99885 * 174.48571 * 12 11 10 14 14 H 1.07996 * 119.99845 * 5.06100 * 13 12 11 15 15 C 1.38655 * 119.99585 * 185.05258 * 13 12 11 16 16 N 1.31556 * 120.00448 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99506 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47019 * 90.00303 * 17 15 13 19 19 H 1.48507 * 109.47073 * 210.00309 * 17 15 13 20 20 H 1.48494 * 109.47410 * 330.00148 * 17 15 13 21 21 C 1.38883 * 119.86333 * 359.70339 * 11 10 9 22 22 C 1.38096 * 119.92703 * 359.97438 * 21 11 10 23 23 C 1.53002 * 109.47077 * 239.99686 * 2 1 3 24 24 C 1.53000 * 117.49361 * 60.00540 * 23 2 1 25 25 C 1.52994 * 60.03471 * 107.47403 * 24 23 2 26 26 H 1.09002 * 109.47165 * 299.99733 * 1 2 3 27 27 H 1.08998 * 109.47202 * 59.99932 * 1 2 3 28 28 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47320 * 300.00352 * 7 6 4 30 30 H 1.09000 * 109.47196 * 60.00646 * 7 6 4 31 31 H 1.07991 * 119.96607 * 359.97438 * 9 8 7 32 32 H 1.07996 * 120.02892 * 180.27245 * 10 9 8 33 33 H 0.97000 * 120.00344 * 179.97438 * 16 15 13 34 34 H 1.07994 * 120.03292 * 179.97438 * 21 11 10 35 35 H 1.08011 * 119.96067 * 179.97438 * 22 21 11 36 36 H 1.08993 * 115.56616 * 274.30993 * 23 2 1 37 37 H 1.08998 * 117.49682 * 214.97514 * 24 23 2 38 38 H 1.08998 * 117.50296 * 359.97362 * 24 23 2 39 39 H 1.09002 * 117.50344 * 107.49517 * 25 24 23 40 40 H 1.08999 * 117.50304 * 252.51993 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7080 -0.2519 2.4496 7 6 2.2276 -0.9859 3.5897 8 6 1.7626 -0.3294 4.8640 9 6 2.5306 0.6599 5.4506 10 6 2.1044 1.2674 6.6154 11 6 0.9091 0.8756 7.2039 12 8 0.4906 1.4663 8.3523 13 6 -0.7304 1.1212 8.8084 14 1 -1.2933 0.3453 8.3110 15 6 -1.2633 1.7625 9.9163 16 7 -0.5778 2.7080 10.5221 17 14 -2.9546 1.2840 10.5487 18 1 -2.8187 0.1981 11.5524 19 1 -3.5991 2.4637 11.1798 20 1 -3.7905 0.8099 9.4166 21 6 0.1429 -0.1222 6.6154 22 6 0.5713 -0.7210 5.4471 23 6 2.0399 -0.7213 -1.2492 24 6 1.6357 -0.1495 -2.6095 25 6 3.0742 0.0058 -2.1123 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8642 -2.0129 3.5569 30 1 3.3171 -0.9847 3.5566 31 1 3.4626 0.9605 4.9953 32 1 2.7024 2.0429 7.0706 33 1 -0.9507 3.1568 11.2969 34 1 -0.7869 -0.4293 7.0709 35 1 -0.0239 -1.4973 4.9892 36 1 2.1271 -1.8045 -1.1643 37 1 1.4568 -0.8565 -3.4196 38 1 1.0061 0.7403 -2.6146 39 1 3.8418 -0.5991 -2.5951 40 1 3.3910 0.9976 -1.7897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748145259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:24 Heat of formation + Delta-G solvation = -73.619062 kcal Electronic energy + Delta-G solvation = -21821.560144 eV Core-core repulsion = 18374.804638 eV Total energy + Delta-G solvation = -3446.755506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59185 -39.11764 -38.01243 -36.84550 -35.92607 -32.67244 -32.38142 -30.46964 -30.22393 -26.27429 -25.46353 -24.72096 -22.59107 -22.14993 -22.05737 -20.59739 -19.84816 -18.09436 -17.70621 -17.23723 -16.74429 -16.24512 -15.27035 -14.88879 -14.63928 -14.59946 -14.28997 -13.76771 -13.64928 -13.59026 -13.01569 -12.82361 -12.78268 -12.48524 -12.26398 -12.13032 -11.75223 -11.72651 -11.40874 -11.24416 -11.02550 -10.82549 -10.70948 -10.69483 -10.50133 -10.42810 -10.35995 -10.21898 -9.41942 -8.91457 -8.27461 -7.33747 -6.53064 -4.11783 1.94698 2.14751 2.23494 2.90757 3.09304 3.10533 3.14791 3.51993 3.90535 4.26913 4.40311 4.55750 4.65618 4.75290 4.96710 5.01901 5.07852 5.15304 5.17304 5.21112 5.25168 5.31893 5.45445 5.57220 5.61616 5.64512 5.70030 5.76580 5.80586 5.92622 5.99801 6.12413 6.32727 6.56216 6.59442 6.80330 6.96404 7.14546 7.26530 7.34900 7.71020 7.82814 7.91720 8.92182 9.60101 10.64408 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030652 B = 0.002659 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.275534 B =10528.697780 C =10906.052963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 H 0.107 0.893 4 C 0.464 3.536 5 O -0.514 6.514 6 O -0.349 6.349 7 C 0.129 3.871 8 C -0.204 4.204 9 C -0.049 4.049 10 C -0.196 4.196 11 C 0.163 3.837 12 O -0.172 6.172 13 C -0.393 4.393 14 H 0.094 0.906 15 C 0.040 3.960 16 N -0.859 5.859 17 Si 0.943 3.057 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.238 4.238 22 C -0.045 4.045 23 C -0.143 4.143 24 C -0.174 4.174 25 C -0.178 4.178 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.271 0.729 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 -4.752 -20.187 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 H 0.125 0.875 4 C 0.307 3.693 5 O -0.402 6.402 6 O -0.266 6.266 7 C 0.057 3.943 8 C -0.205 4.205 9 C -0.067 4.067 10 C -0.215 4.215 11 C 0.108 3.892 12 O -0.074 6.074 13 C -0.469 4.469 14 H 0.111 0.889 15 C -0.165 4.165 16 N -0.493 5.493 17 Si 0.767 3.233 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.191 1.191 21 C -0.257 4.257 22 C -0.063 4.063 23 C -0.161 4.161 24 C -0.211 4.211 25 C -0.215 4.215 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.747 -4.718 -19.790 20.529 hybrid contribution -0.722 -0.383 0.403 0.912 sum 2.025 -5.101 -19.386 20.148 Atomic orbital electron populations 1.21750 0.91610 1.03125 1.03503 1.20569 0.98198 0.99980 0.88542 0.87503 1.23555 0.77443 0.82924 0.85396 1.90627 1.35885 1.26187 1.87547 1.86653 1.69400 1.55905 1.14597 1.21699 0.97990 0.94031 0.80627 1.18869 0.99366 1.05025 0.97223 1.20509 0.98037 0.93893 0.94285 1.20196 0.97726 1.05077 0.98499 1.19438 0.92737 0.90797 0.86227 1.83980 1.33687 1.58398 1.31379 1.21372 0.91626 1.21068 1.12882 0.88874 1.25327 0.99849 0.95470 0.95825 1.70035 1.37542 1.22053 1.19689 0.85686 0.80029 0.78341 0.79246 1.19793 1.20169 1.19102 1.21140 1.03296 1.01920 0.99326 1.20614 0.93946 0.97402 0.94357 1.22120 1.04041 1.00157 0.89802 1.22983 0.98157 1.03288 0.96645 1.23062 0.92631 1.01968 1.03806 0.90737 0.91092 0.91995 0.91300 0.91254 0.86915 0.86208 0.91858 0.85268 0.87350 0.86510 0.88533 0.88483 0.88615 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.96 37.16 0.33 -0.90 16 2 C -0.05 -0.53 2.98 -91.77 -0.27 -0.80 16 3 H 0.11 0.93 7.90 -51.93 -0.41 0.52 16 4 C 0.46 6.25 7.26 36.01 0.26 6.51 16 5 O -0.51 -8.06 15.40 -18.75 -0.29 -8.35 16 6 O -0.35 -5.20 10.11 -39.26 -0.40 -5.60 16 7 C 0.13 1.95 5.59 36.01 0.20 2.15 16 8 C -0.20 -3.55 5.52 -104.58 -0.58 -4.13 16 9 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 10 C -0.20 -4.07 9.99 -39.39 -0.39 -4.46 16 11 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 12 O -0.17 -4.81 9.76 0.03 0.00 -4.81 16 13 C -0.39 -10.77 9.49 30.89 0.29 -10.48 16 14 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 15 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 17 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 21 C -0.24 -5.07 9.17 -39.39 -0.36 -5.43 16 22 C -0.04 -0.82 9.69 -39.61 -0.38 -1.20 16 23 C -0.14 -1.30 4.76 -90.58 -0.43 -1.73 16 24 C -0.17 -1.19 9.73 -26.73 -0.26 -1.45 16 25 C -0.18 -1.38 10.18 -26.69 -0.27 -1.65 16 26 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 27 H 0.07 0.47 7.29 -51.93 -0.38 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 35 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.12 1.22 7.47 -51.93 -0.39 0.84 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.58 7.61 -51.93 -0.39 0.18 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -30.86 345.29 -7.84 -38.70 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.49 Total: 4.02 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -2.60 Total: -20.24 kcal Atomic # 7 Polarization: -24.73 SS G_CDS: 0.76 Total: -23.97 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.69 Total: -18.76 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.86 -7.84 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748145259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.922 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds