Wall clock time and date at job start Tue Mar 31 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47218 * 2 1 4 4 C 1.50703 * 109.46898 * 120.00312 * 2 1 3 5 5 O 1.20827 * 120.00143 * 120.00589 * 4 2 1 6 6 O 1.34230 * 119.99859 * 299.99486 * 4 2 1 7 7 C 1.45206 * 116.99857 * 180.02562 * 6 4 2 8 8 C 1.50702 * 109.47055 * 180.02562 * 7 6 4 9 9 C 1.38304 * 119.92883 * 269.72933 * 8 7 6 10 10 C 1.38106 * 120.06324 * 179.72511 * 9 8 7 11 11 C 1.38877 * 119.93099 * 0.56884 * 10 9 8 12 12 O 1.35748 * 120.06773 * 179.68367 * 11 10 9 13 13 C 1.34840 * 116.99885 * 174.48571 * 12 11 10 14 14 H 1.07996 * 119.99845 * 5.06100 * 13 12 11 15 15 C 1.38655 * 119.99585 * 185.05258 * 13 12 11 16 16 N 1.31556 * 120.00448 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99506 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47019 * 90.00303 * 17 15 13 19 19 H 1.48507 * 109.47073 * 210.00309 * 17 15 13 20 20 H 1.48494 * 109.47410 * 330.00148 * 17 15 13 21 21 C 1.38883 * 119.86333 * 359.70339 * 11 10 9 22 22 C 1.38096 * 119.92703 * 359.97438 * 21 11 10 23 23 C 1.53002 * 109.47077 * 239.99686 * 2 1 3 24 24 C 1.53000 * 117.49361 * 60.00540 * 23 2 1 25 25 C 1.52994 * 60.03471 * 107.47403 * 24 23 2 26 26 H 1.09002 * 109.47165 * 299.99733 * 1 2 3 27 27 H 1.08998 * 109.47202 * 59.99932 * 1 2 3 28 28 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47320 * 300.00352 * 7 6 4 30 30 H 1.09000 * 109.47196 * 60.00646 * 7 6 4 31 31 H 1.07991 * 119.96607 * 359.97438 * 9 8 7 32 32 H 1.07996 * 120.02892 * 180.27245 * 10 9 8 33 33 H 0.97000 * 120.00344 * 179.97438 * 16 15 13 34 34 H 1.07994 * 120.03292 * 179.97438 * 21 11 10 35 35 H 1.08011 * 119.96067 * 179.97438 * 22 21 11 36 36 H 1.08993 * 115.56616 * 274.30993 * 23 2 1 37 37 H 1.08998 * 117.49682 * 214.97514 * 24 23 2 38 38 H 1.08998 * 117.50296 * 359.97362 * 24 23 2 39 39 H 1.09002 * 117.50344 * 107.49517 * 25 24 23 40 40 H 1.08999 * 117.50304 * 252.51993 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7080 -0.2519 2.4496 7 6 2.2276 -0.9859 3.5897 8 6 1.7626 -0.3294 4.8640 9 6 2.5306 0.6599 5.4506 10 6 2.1044 1.2674 6.6154 11 6 0.9091 0.8756 7.2039 12 8 0.4906 1.4663 8.3523 13 6 -0.7304 1.1212 8.8084 14 1 -1.2933 0.3453 8.3110 15 6 -1.2633 1.7625 9.9163 16 7 -0.5778 2.7080 10.5221 17 14 -2.9546 1.2840 10.5487 18 1 -2.8187 0.1981 11.5524 19 1 -3.5991 2.4637 11.1798 20 1 -3.7905 0.8099 9.4166 21 6 0.1429 -0.1222 6.6154 22 6 0.5713 -0.7210 5.4471 23 6 2.0399 -0.7213 -1.2492 24 6 1.6357 -0.1495 -2.6095 25 6 3.0742 0.0058 -2.1123 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8642 -2.0129 3.5569 30 1 3.3171 -0.9847 3.5566 31 1 3.4626 0.9605 4.9953 32 1 2.7024 2.0429 7.0706 33 1 -0.9507 3.1568 11.2969 34 1 -0.7869 -0.4293 7.0709 35 1 -0.0239 -1.4973 4.9892 36 1 2.1271 -1.8045 -1.1643 37 1 1.4568 -0.8565 -3.4196 38 1 1.0061 0.7403 -2.6146 39 1 3.8418 -0.5991 -2.5951 40 1 3.3910 0.9976 -1.7897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748145259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:23 Heat of formation + Delta-G solvation = -89.487311 kcal Electronic energy + Delta-G solvation = -21822.248243 eV Core-core repulsion = 18374.804638 eV Total energy + Delta-G solvation = -3447.443605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.68758 -40.79856 -38.94366 -38.27388 -37.18215 -34.38107 -33.38661 -31.99715 -31.79605 -27.88036 -26.81199 -25.88282 -23.70161 -23.23925 -23.04042 -22.14130 -20.66261 -19.91071 -18.94112 -18.71477 -17.94175 -17.40782 -16.48726 -16.32437 -16.15589 -15.65818 -15.56199 -15.39823 -15.12172 -14.68749 -14.41740 -14.10454 -14.00858 -13.70688 -13.49983 -13.14368 -13.04319 -12.96513 -12.63151 -12.44309 -12.29365 -12.26555 -12.12339 -11.90714 -11.67246 -11.42733 -11.23735 -11.21233 -10.92810 -10.81778 -9.85417 -9.06989 -8.49454 -6.18003 0.42573 0.54254 1.18349 1.35939 1.43757 1.53326 1.80245 2.16788 2.79355 2.91299 3.13427 3.44601 3.57305 3.66414 3.87487 3.89783 3.96937 4.09707 4.12916 4.23345 4.28337 4.36362 4.42788 4.51919 4.54201 4.72644 4.79431 4.87030 4.96726 4.97714 5.04378 5.11283 5.21171 5.26021 5.28892 5.31010 5.43214 5.53639 5.64697 5.67700 5.99483 6.10550 6.74094 6.94981 7.72737 8.73235 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030652 B = 0.002659 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.275534 B =10528.697780 C =10906.052963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 H 0.123 0.877 4 C 0.464 3.536 5 O -0.538 6.538 6 O -0.357 6.357 7 C 0.129 3.871 8 C -0.181 4.181 9 C -0.042 4.042 10 C -0.205 4.205 11 C 0.126 3.874 12 O -0.226 6.226 13 C -0.416 4.416 14 H 0.104 0.896 15 C -0.021 4.021 16 N -0.918 5.918 17 Si 1.019 2.981 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.252 1.252 21 C -0.244 4.244 22 C -0.043 4.043 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.182 4.182 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.274 0.726 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -5.740 -23.221 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 H 0.140 0.860 4 C 0.308 3.692 5 O -0.428 6.428 6 O -0.273 6.273 7 C 0.056 3.944 8 C -0.182 4.182 9 C -0.060 4.060 10 C -0.224 4.224 11 C 0.074 3.926 12 O -0.132 6.132 13 C -0.492 4.492 14 H 0.121 0.879 15 C -0.219 4.219 16 N -0.556 5.556 17 Si 0.838 3.162 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.176 1.176 21 C -0.263 4.263 22 C -0.061 4.061 23 C -0.179 4.179 24 C -0.192 4.192 25 C -0.219 4.219 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.167 0.833 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.321 -5.734 -22.885 23.706 hybrid contribution -0.360 -0.210 0.987 1.071 sum 1.962 -5.944 -21.897 22.774 Atomic orbital electron populations 1.21761 0.90582 1.03104 1.04244 1.20690 0.98916 1.00268 0.86852 0.85950 1.24295 0.76697 0.82659 0.85521 1.90621 1.37086 1.27408 1.87676 1.86630 1.69627 1.55991 1.15092 1.21645 0.98809 0.94167 0.79733 1.19245 0.98134 1.03209 0.97636 1.20894 0.99194 0.93056 0.92834 1.20446 0.97004 1.05532 0.99447 1.19989 0.94286 0.91973 0.86304 1.83952 1.34547 1.60805 1.33870 1.21858 0.92087 1.21685 1.13527 0.87850 1.26610 1.04273 0.95252 0.95772 1.70177 1.40045 1.24353 1.20976 0.84578 0.74451 0.78235 0.78913 1.18803 1.19593 1.17560 1.21242 1.03074 1.01719 1.00306 1.20949 0.94531 0.97547 0.93097 1.22029 1.06097 0.99210 0.90602 1.23088 0.97476 1.03530 0.95084 1.23166 0.93221 1.02074 1.03415 0.91620 0.88724 0.92411 0.90189 0.89923 0.83335 0.86225 0.91717 0.85766 0.84158 0.88381 0.87608 0.87013 0.88523 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.96 71.98 0.65 -1.37 16 2 C -0.05 -0.83 2.98 -11.54 -0.03 -0.86 16 3 H 0.12 1.72 7.90 -2.39 -0.02 1.71 16 4 C 0.46 11.38 7.26 71.24 0.52 11.90 16 5 O -0.54 -15.86 15.40 21.96 0.34 -15.52 16 6 O -0.36 -9.57 10.11 -51.42 -0.52 -10.09 16 7 C 0.13 3.46 5.59 71.24 0.40 3.86 16 8 C -0.18 -5.82 5.52 -19.83 -0.11 -5.93 16 9 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 10 C -0.21 -8.57 9.99 22.39 0.22 -8.35 16 11 C 0.13 6.16 6.65 22.58 0.15 6.31 16 12 O -0.23 -13.38 9.76 -22.81 -0.22 -13.60 16 13 C -0.42 -23.79 9.49 67.92 0.64 -23.15 16 14 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 15 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 16 N -0.92 -55.59 13.67 21.61 0.30 -55.30 16 17 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 21 C -0.24 -10.44 9.17 22.39 0.21 -10.24 16 22 C -0.04 -1.49 9.69 22.25 0.22 -1.27 16 23 C -0.16 -2.56 4.76 -10.77 -0.05 -2.62 16 24 C -0.16 -1.63 9.73 30.59 0.30 -1.34 16 25 C -0.18 -2.37 10.18 30.62 0.31 -2.05 16 26 H 0.06 1.07 8.11 -2.39 -0.02 1.06 16 27 H 0.09 0.92 7.29 -2.39 -0.02 0.90 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 30 H 0.08 2.05 8.08 -2.39 -0.02 2.03 16 31 H 0.15 3.92 8.06 -2.92 -0.02 3.90 16 32 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 35 H 0.14 3.94 8.06 -2.90 -0.02 3.91 16 36 H 0.10 1.94 7.47 -2.39 -0.02 1.92 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 0.87 7.61 -2.39 -0.02 0.85 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 1.18 8.05 -2.39 -0.02 1.16 16 Total: -1.00 -70.71 345.29 7.05 -63.66 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 1.04 Total: 23.77 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 4.10 Total: -37.01 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.30 Total: -55.30 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.40 Total: -39.20 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -70.71 7.05 -63.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748145259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.827 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds