Wall clock time and date at job start Tue Mar 31 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.47451 * 2 1 4 4 C 1.50706 * 109.47289 * 240.00287 * 2 1 3 5 5 O 1.20820 * 119.99985 * 240.27904 * 4 2 1 6 6 O 1.34234 * 120.00044 * 59.99408 * 4 2 1 7 7 C 1.45200 * 116.99916 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.46852 * 180.02562 * 7 6 4 9 9 C 1.38306 * 119.93444 * 269.73291 * 8 7 6 10 10 C 1.38099 * 120.06736 * 179.72835 * 9 8 7 11 11 C 1.38874 * 119.93457 * 0.56719 * 10 9 8 12 12 O 1.35748 * 120.07384 * 179.68834 * 11 10 9 13 13 C 1.34827 * 117.00490 * 174.48449 * 12 11 10 14 14 H 1.08002 * 119.99701 * 5.05362 * 13 12 11 15 15 C 1.38653 * 120.00267 * 185.05225 * 13 12 11 16 16 N 1.31560 * 119.99759 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99945 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47179 * 60.00436 * 17 15 13 19 19 H 1.48501 * 109.47102 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47328 * 300.00154 * 17 15 13 21 21 C 1.38886 * 119.85823 * 359.70257 * 11 10 9 22 22 C 1.38095 * 119.93293 * 0.02562 * 21 11 10 23 23 C 1.52998 * 109.47412 * 120.00426 * 2 1 3 24 24 C 1.52998 * 117.49731 * 248.62082 * 23 2 1 25 25 C 1.52995 * 60.00200 * 252.50726 * 24 23 2 26 26 H 1.09001 * 109.47302 * 299.99816 * 1 2 3 27 27 H 1.09010 * 109.47371 * 59.99691 * 1 2 3 28 28 H 1.09003 * 109.47451 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47320 * 300.00907 * 7 6 4 30 30 H 1.09000 * 109.46818 * 60.00904 * 7 6 4 31 31 H 1.07998 * 119.96320 * 359.97255 * 9 8 7 32 32 H 1.08009 * 120.03142 * 180.27101 * 10 9 8 33 33 H 0.96994 * 119.99420 * 179.97438 * 16 15 13 34 34 H 1.08001 * 120.03115 * 179.97438 * 21 11 10 35 35 H 1.08000 * 119.96418 * 179.97438 * 22 21 11 36 36 H 1.08997 * 115.54932 * 34.32604 * 23 2 1 37 37 H 1.09008 * 117.50137 * 359.97438 * 24 23 2 38 38 H 1.09002 * 117.50078 * 145.01673 * 24 23 2 39 39 H 1.09002 * 117.49905 * 252.50972 * 25 24 23 40 40 H 1.08995 * 117.49848 * 107.48746 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7227 -1.6956 -1.1197 6 8 1.7079 -0.2518 -2.4497 7 6 2.2267 -0.9863 -3.5898 8 6 1.7627 -0.3290 -4.8640 9 6 0.5739 -0.7232 -5.4506 10 6 0.1433 -0.1189 -6.6153 11 6 0.9111 0.8774 -7.2039 12 8 0.4937 1.4690 -8.3522 13 6 1.2259 2.5051 -8.8084 14 1 2.1451 2.7771 -8.3109 15 6 0.7989 3.2213 -9.9162 16 7 -0.3205 2.8895 -10.5225 17 14 1.8132 4.6572 -10.5477 18 1 3.1656 4.1777 -10.9301 19 1 1.1449 5.2519 -11.7331 20 1 1.9350 5.6839 -9.4818 21 6 2.1072 1.2671 -6.6154 22 6 2.5296 0.6629 -5.4477 23 6 2.0400 -0.7213 1.2491 24 6 2.7419 0.1225 2.3150 25 6 3.5550 -0.8281 1.4342 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.3162 -0.9861 -3.5569 30 1 1.8624 -2.0131 -3.5567 31 1 -0.0202 -1.5017 -4.9953 32 1 -0.7874 -0.4241 -7.0706 33 1 -0.6194 3.3908 -11.2972 34 1 2.7067 2.0414 -7.0710 35 1 3.4599 0.9653 -4.9898 36 1 1.4310 -1.5586 1.5901 37 1 2.8407 1.1916 2.1261 38 1 2.5947 -0.1594 3.3576 39 1 3.9427 -1.7355 1.8972 40 1 4.1883 -0.3846 0.6659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748145261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:26 Heat of formation + Delta-G solvation = -72.246016 kcal Electronic energy + Delta-G solvation = -21902.635334 eV Core-core repulsion = 18455.939367 eV Total energy + Delta-G solvation = -3446.695967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59862 -39.11769 -37.92259 -36.76758 -35.85043 -32.81813 -32.40395 -30.47429 -30.22498 -26.24648 -25.30216 -24.58176 -22.60257 -22.24946 -22.06095 -20.59513 -19.98114 -18.08270 -17.52727 -17.15992 -16.72217 -16.01949 -15.51415 -14.92575 -14.69422 -14.62443 -14.35161 -13.76152 -13.69899 -13.23034 -13.07383 -12.79472 -12.77344 -12.30899 -12.28553 -12.01818 -11.79126 -11.71739 -11.41207 -11.33306 -11.01160 -10.82292 -10.74291 -10.69507 -10.51392 -10.41328 -10.34364 -10.09605 -9.42122 -8.90721 -8.27287 -7.33397 -6.52754 -4.11525 1.95278 2.14946 2.26539 2.89197 3.09390 3.11435 3.13351 3.68461 3.90830 4.23231 4.45083 4.54339 4.68605 4.78968 4.97924 5.00409 5.04522 5.16013 5.20824 5.22885 5.25481 5.39045 5.48985 5.61041 5.64964 5.69003 5.70891 5.76834 5.82921 5.89527 6.00303 6.12528 6.32889 6.57950 6.60299 6.80546 6.96481 7.14667 7.26725 7.35047 7.71293 7.86433 7.91963 8.92366 9.60313 10.64669 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029659 B = 0.002695 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.825254 B =10385.729096 C =10646.067883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 H 0.107 0.893 4 C 0.459 3.541 5 O -0.508 6.508 6 O -0.350 6.350 7 C 0.129 3.871 8 C -0.204 4.204 9 C -0.049 4.049 10 C -0.196 4.196 11 C 0.163 3.837 12 O -0.172 6.172 13 C -0.394 4.394 14 H 0.093 0.907 15 C 0.041 3.959 16 N -0.859 5.859 17 Si 0.942 3.058 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.238 4.238 22 C -0.045 4.045 23 C -0.143 4.143 24 C -0.179 4.179 25 C -0.159 4.159 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.272 0.728 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.906 -4.283 19.965 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 H 0.125 0.875 4 C 0.302 3.698 5 O -0.396 6.396 6 O -0.267 6.267 7 C 0.057 3.943 8 C -0.205 4.205 9 C -0.067 4.067 10 C -0.215 4.215 11 C 0.108 3.892 12 O -0.074 6.074 13 C -0.470 4.470 14 H 0.111 0.889 15 C -0.164 4.164 16 N -0.493 5.493 17 Si 0.767 3.233 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.194 1.194 21 C -0.257 4.257 22 C -0.064 4.064 23 C -0.161 4.161 24 C -0.215 4.215 25 C -0.196 4.196 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.777 -4.543 19.562 20.434 hybrid contribution 0.658 0.612 -0.407 0.986 sum 4.434 -3.932 19.155 20.051 Atomic orbital electron populations 1.21739 0.91554 1.02999 1.03610 1.20609 0.98333 0.99929 0.88468 0.87547 1.23669 0.77618 0.83185 0.85345 1.90635 1.35773 1.25719 1.87511 1.86656 1.69465 1.55961 1.14636 1.21678 0.97946 0.94011 0.80673 1.18874 0.99529 1.04824 0.97234 1.20505 0.94235 0.97698 0.94279 1.20195 1.01721 1.01081 0.98500 1.19436 0.91833 0.91719 0.86225 1.83975 1.49809 1.42253 1.31378 1.21321 1.05542 1.07225 1.12911 0.88938 1.25323 0.96662 0.98651 0.95806 1.70029 1.20300 1.39284 1.19723 0.85757 0.79114 0.79850 0.78600 1.19419 1.20199 1.19398 1.21139 0.99220 1.05986 0.99343 1.20614 0.97828 0.93552 0.94370 1.22037 0.96305 1.01905 0.95832 1.23102 1.04529 0.97695 0.96222 1.22829 0.93335 1.01304 1.02174 0.91015 0.90706 0.92082 0.91377 0.91296 0.86917 0.86210 0.91808 0.85284 0.87382 0.87202 0.88641 0.88554 0.88646 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.11 37.15 0.34 -0.87 16 2 C -0.05 -0.53 2.98 -91.78 -0.27 -0.81 16 3 H 0.11 0.93 7.90 -51.93 -0.41 0.52 16 4 C 0.46 6.13 7.13 36.01 0.26 6.39 16 5 O -0.51 -7.81 14.84 -18.75 -0.28 -8.09 16 6 O -0.35 -5.22 10.11 -39.27 -0.40 -5.61 16 7 C 0.13 1.95 5.59 36.00 0.20 2.15 16 8 C -0.20 -3.55 5.52 -104.57 -0.58 -4.13 16 9 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 10 C -0.20 -4.07 9.99 -39.40 -0.39 -4.46 16 11 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 12 O -0.17 -4.81 9.76 0.06 0.00 -4.81 16 13 C -0.39 -10.80 9.49 30.89 0.29 -10.51 16 14 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 15 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 16 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 17 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 21 C -0.24 -5.08 9.17 -39.39 -0.36 -5.44 16 22 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 23 C -0.14 -1.28 4.72 -90.62 -0.43 -1.71 16 24 C -0.18 -1.31 10.18 -26.73 -0.27 -1.58 16 25 C -0.16 -1.47 8.98 -26.73 -0.24 -1.71 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.70 8.11 -51.92 -0.42 0.28 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 33 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.11 0.95 8.11 -51.93 -0.42 0.53 16 37 H 0.10 0.63 8.05 -51.92 -0.42 0.22 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.95 8.10 -51.93 -0.42 0.52 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -30.79 345.95 -7.90 -38.69 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.59 Total: 4.08 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -2.58 Total: -20.54 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.76 Total: -24.00 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.67 Total: -18.52 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.79 -7.90 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748145261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.560 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds