Wall clock time and date at job start Tue Mar 31 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09003 * 109.47451 * 2 1 4 4 C 1.50706 * 109.47289 * 240.00287 * 2 1 3 5 5 O 1.20820 * 119.99985 * 240.27904 * 4 2 1 6 6 O 1.34234 * 120.00044 * 59.99408 * 4 2 1 7 7 C 1.45200 * 116.99916 * 180.02562 * 6 4 2 8 8 C 1.50695 * 109.46852 * 180.02562 * 7 6 4 9 9 C 1.38306 * 119.93444 * 269.73291 * 8 7 6 10 10 C 1.38099 * 120.06736 * 179.72835 * 9 8 7 11 11 C 1.38874 * 119.93457 * 0.56719 * 10 9 8 12 12 O 1.35748 * 120.07384 * 179.68834 * 11 10 9 13 13 C 1.34827 * 117.00490 * 174.48449 * 12 11 10 14 14 H 1.08002 * 119.99701 * 5.05362 * 13 12 11 15 15 C 1.38653 * 120.00267 * 185.05225 * 13 12 11 16 16 N 1.31560 * 119.99759 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99945 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47179 * 60.00436 * 17 15 13 19 19 H 1.48501 * 109.47102 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47328 * 300.00154 * 17 15 13 21 21 C 1.38886 * 119.85823 * 359.70257 * 11 10 9 22 22 C 1.38095 * 119.93293 * 0.02562 * 21 11 10 23 23 C 1.52998 * 109.47412 * 120.00426 * 2 1 3 24 24 C 1.52998 * 117.49731 * 248.62082 * 23 2 1 25 25 C 1.52995 * 60.00200 * 252.50726 * 24 23 2 26 26 H 1.09001 * 109.47302 * 299.99816 * 1 2 3 27 27 H 1.09010 * 109.47371 * 59.99691 * 1 2 3 28 28 H 1.09003 * 109.47451 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47320 * 300.00907 * 7 6 4 30 30 H 1.09000 * 109.46818 * 60.00904 * 7 6 4 31 31 H 1.07998 * 119.96320 * 359.97255 * 9 8 7 32 32 H 1.08009 * 120.03142 * 180.27101 * 10 9 8 33 33 H 0.96994 * 119.99420 * 179.97438 * 16 15 13 34 34 H 1.08001 * 120.03115 * 179.97438 * 21 11 10 35 35 H 1.08000 * 119.96418 * 179.97438 * 22 21 11 36 36 H 1.08997 * 115.54932 * 34.32604 * 23 2 1 37 37 H 1.09008 * 117.50137 * 359.97438 * 24 23 2 38 38 H 1.09002 * 117.50078 * 145.01673 * 24 23 2 39 39 H 1.09002 * 117.49905 * 252.50972 * 25 24 23 40 40 H 1.08995 * 117.49848 * 107.48746 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7227 -1.6956 -1.1197 6 8 1.7079 -0.2518 -2.4497 7 6 2.2267 -0.9863 -3.5898 8 6 1.7627 -0.3290 -4.8640 9 6 0.5739 -0.7232 -5.4506 10 6 0.1433 -0.1189 -6.6153 11 6 0.9111 0.8774 -7.2039 12 8 0.4937 1.4690 -8.3522 13 6 1.2259 2.5051 -8.8084 14 1 2.1451 2.7771 -8.3109 15 6 0.7989 3.2213 -9.9162 16 7 -0.3205 2.8895 -10.5225 17 14 1.8132 4.6572 -10.5477 18 1 3.1656 4.1777 -10.9301 19 1 1.1449 5.2519 -11.7331 20 1 1.9350 5.6839 -9.4818 21 6 2.1072 1.2671 -6.6154 22 6 2.5296 0.6629 -5.4477 23 6 2.0400 -0.7213 1.2491 24 6 2.7419 0.1225 2.3150 25 6 3.5550 -0.8281 1.4342 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.3162 -0.9861 -3.5569 30 1 1.8624 -2.0131 -3.5567 31 1 -0.0202 -1.5017 -4.9953 32 1 -0.7874 -0.4241 -7.0706 33 1 -0.6194 3.3908 -11.2972 34 1 2.7067 2.0414 -7.0710 35 1 3.4599 0.9653 -4.9898 36 1 1.4310 -1.5586 1.5901 37 1 2.8407 1.1916 2.1261 38 1 2.5947 -0.1594 3.3576 39 1 3.9427 -1.7355 1.8972 40 1 4.1883 -0.3846 0.6659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748145261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:25 Heat of formation + Delta-G solvation = -88.000949 kcal Electronic energy + Delta-G solvation = -21903.318519 eV Core-core repulsion = 18455.939367 eV Total energy + Delta-G solvation = -3447.379152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.67935 -40.80018 -38.93404 -38.19634 -37.05797 -34.38308 -33.54874 -32.00842 -31.80491 -27.87740 -26.77099 -25.61387 -23.70191 -23.34722 -23.08015 -22.14563 -20.84683 -19.90548 -18.92584 -18.56459 -17.84061 -17.22022 -16.47708 -16.37993 -16.12611 -15.80383 -15.62304 -15.52803 -15.19396 -14.57595 -14.38052 -14.23037 -13.80021 -13.57874 -13.43214 -13.20390 -13.04467 -12.76565 -12.61249 -12.45322 -12.36504 -12.25827 -12.15410 -12.01544 -11.66092 -11.53910 -11.21709 -11.04476 -10.98031 -10.80273 -9.85512 -9.06776 -8.49387 -6.18009 0.42965 0.54166 1.22603 1.35681 1.45067 1.51816 1.80539 2.16890 2.78113 2.98560 3.16037 3.44721 3.52931 3.73754 3.85067 3.90527 3.93764 4.12172 4.15112 4.17787 4.29069 4.33456 4.43388 4.53065 4.55142 4.72587 4.82225 4.89207 4.96986 4.97819 5.06056 5.11010 5.20016 5.21143 5.26848 5.31541 5.44309 5.55579 5.64624 5.67765 5.99332 6.10594 6.78733 6.94906 7.72691 8.73105 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029659 B = 0.002695 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.825254 B =10385.729096 C =10646.067883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 H 0.120 0.880 4 C 0.459 3.541 5 O -0.530 6.530 6 O -0.359 6.359 7 C 0.130 3.870 8 C -0.181 4.181 9 C -0.042 4.042 10 C -0.205 4.205 11 C 0.125 3.875 12 O -0.226 6.226 13 C -0.417 4.417 14 H 0.104 0.896 15 C -0.021 4.021 16 N -0.918 5.918 17 Si 1.019 2.981 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.257 1.257 21 C -0.245 4.245 22 C -0.044 4.044 23 C -0.152 4.152 24 C -0.156 4.156 25 C -0.178 4.178 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.274 0.726 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.107 -4.238 23.031 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 H 0.138 0.862 4 C 0.303 3.697 5 O -0.419 6.419 6 O -0.276 6.276 7 C 0.057 3.943 8 C -0.182 4.182 9 C -0.060 4.060 10 C -0.224 4.224 11 C 0.074 3.926 12 O -0.131 6.131 13 C -0.493 4.493 14 H 0.121 0.879 15 C -0.219 4.219 16 N -0.555 5.555 17 Si 0.838 3.162 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.181 1.181 21 C -0.264 4.264 22 C -0.062 4.062 23 C -0.170 4.170 24 C -0.192 4.192 25 C -0.215 4.215 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.167 0.833 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.995 -4.529 22.689 23.669 hybrid contribution 0.342 0.348 -1.003 1.115 sum 5.337 -4.181 21.686 22.721 Atomic orbital electron populations 1.21742 0.90424 1.03138 1.04266 1.20747 0.99146 1.00180 0.86875 0.86209 1.24400 0.76923 0.82973 0.85422 1.90631 1.36825 1.26847 1.87601 1.86633 1.69707 1.56098 1.15160 1.21616 0.98652 0.94226 0.79775 1.19256 0.98355 1.02930 0.97664 1.20890 0.94572 0.97674 0.92820 1.20447 1.01766 1.00758 0.99447 1.19988 0.93443 0.92840 0.86307 1.83948 1.51489 1.43842 1.33870 1.21819 1.06176 1.07704 1.13569 0.87879 1.26607 0.97934 1.01580 0.95742 1.70174 1.22847 1.41530 1.20984 0.84647 0.77547 0.75911 0.78132 1.18114 1.19635 1.18098 1.21244 0.98526 1.06276 1.00326 1.20949 0.99033 0.93107 0.93126 1.22086 0.95994 1.02710 0.96195 1.23191 1.01760 0.97803 0.96475 1.22834 0.93418 1.02251 1.02964 0.88757 0.91655 0.92224 0.90268 0.89986 0.83335 0.86218 0.91708 0.85772 0.84204 0.86957 0.87632 0.86930 0.88626 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.11 71.98 0.66 -1.30 16 2 C -0.05 -0.85 2.98 -11.54 -0.03 -0.89 16 3 H 0.12 1.71 7.90 -2.39 -0.02 1.69 16 4 C 0.46 11.08 7.13 71.24 0.51 11.59 16 5 O -0.53 -15.15 14.84 21.98 0.33 -14.82 16 6 O -0.36 -9.61 10.11 -51.45 -0.52 -10.13 16 7 C 0.13 3.48 5.59 71.23 0.40 3.88 16 8 C -0.18 -5.82 5.52 -19.83 -0.11 -5.93 16 9 C -0.04 -1.39 9.69 22.25 0.22 -1.18 16 10 C -0.20 -8.58 9.99 22.39 0.22 -8.35 16 11 C 0.13 6.16 6.65 22.58 0.15 6.31 16 12 O -0.23 -13.38 9.76 -22.69 -0.22 -13.60 16 13 C -0.42 -23.90 9.49 67.92 0.64 -23.26 16 14 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 15 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 16 N -0.92 -55.64 13.67 21.61 0.30 -55.34 16 17 Si 1.02 42.07 29.55 68.60 2.03 44.10 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 C -0.24 -10.49 9.17 22.39 0.21 -10.28 16 22 C -0.04 -1.53 9.69 22.25 0.22 -1.31 16 23 C -0.15 -2.32 4.72 -10.79 -0.05 -2.38 16 24 C -0.16 -1.77 10.18 30.59 0.31 -1.46 16 25 C -0.18 -2.94 8.98 30.59 0.27 -2.66 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 1.06 8.11 -2.38 -0.02 1.04 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 30 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 33 H 0.27 15.22 8.31 -92.71 -0.77 14.44 16 34 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 35 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 36 H 0.11 1.66 8.11 -2.39 -0.02 1.64 16 37 H 0.11 1.01 8.05 -2.38 -0.02 0.99 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -70.45 345.95 7.02 -63.44 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 1.04 Total: 24.28 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 4.07 Total: -37.92 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.30 Total: -55.34 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.42 Total: -38.56 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -70.45 7.02 -63.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748145261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.565 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds