Wall clock time and date at job start Tue Mar 31 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00076 * 2 1 4 4 C 1.53000 * 109.47296 * 124.99373 * 3 2 1 5 5 C 1.53006 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46884 * 180.02562 * 5 4 3 7 7 O 1.20821 * 120.00185 * 359.97438 * 6 5 4 8 8 O 1.34231 * 120.00087 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00047 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47037 * 179.97438 * 9 8 6 11 11 C 1.38294 * 119.93130 * 269.73094 * 10 9 8 12 12 C 1.38099 * 120.07055 * 179.72623 * 11 10 9 13 13 C 1.38885 * 119.92916 * 0.56465 * 12 11 10 14 14 O 1.35746 * 120.07221 * 179.68553 * 13 12 11 15 15 C 1.34828 * 117.00240 * 174.48968 * 14 13 12 16 16 H 1.08006 * 120.00054 * 5.05118 * 15 14 13 17 17 C 1.38655 * 120.00332 * 185.05591 * 15 14 13 18 18 N 1.31553 * 119.99844 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00136 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46869 * 89.99930 * 19 17 15 21 21 H 1.48504 * 109.46954 * 209.99804 * 19 17 15 22 22 H 1.48494 * 109.47063 * 330.00052 * 19 17 15 23 23 C 1.38888 * 119.85809 * 359.70827 * 13 12 11 24 24 C 1.38097 * 119.93011 * 359.97438 * 23 13 12 25 25 H 1.08004 * 120.00224 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99909 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00003 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47125 * 4.99611 * 3 2 1 29 29 H 1.09000 * 109.47515 * 244.99666 * 3 2 1 30 30 H 1.09001 * 109.46840 * 60.00063 * 4 3 2 31 31 H 1.08996 * 109.47183 * 300.00076 * 4 3 2 32 32 H 1.09001 * 109.47150 * 60.00408 * 5 4 3 33 33 H 1.08996 * 109.47345 * 300.00132 * 5 4 3 34 34 H 1.08996 * 109.47566 * 299.99750 * 9 8 6 35 35 H 1.09002 * 109.47418 * 60.00155 * 9 8 6 36 36 H 1.08001 * 119.96614 * 359.97036 * 11 10 9 37 37 H 1.08000 * 120.04137 * 180.26759 * 12 11 10 38 38 H 0.97003 * 120.00423 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.03290 * 179.97438 * 23 13 12 40 40 H 1.07997 * 119.96090 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 6 4.7577 2.6853 2.3448 7 8 4.8209 1.7423 3.0975 8 8 5.5394 3.7578 2.5457 9 6 6.4368 3.7151 3.6863 10 6 7.2291 4.9955 3.7505 11 6 8.4445 5.0884 3.0973 12 6 9.1701 6.2622 3.1495 13 6 8.6837 7.3462 3.8687 14 8 9.3976 8.4993 3.9272 15 6 8.8173 9.5479 4.5448 16 1 7.8634 9.4249 5.0363 17 6 9.4450 10.7842 4.5491 18 7 10.6071 10.9340 3.9509 19 14 8.6407 12.2372 5.4043 20 1 9.0836 12.2849 6.8209 21 1 9.0349 13.4947 4.7197 22 1 7.1643 12.0869 5.3520 23 6 7.4654 7.2478 4.5283 24 6 6.7414 6.0734 4.4667 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9313 30 1 3.7399 0.5066 1.0922 31 1 2.4771 1.2357 2.1130 32 1 3.0957 3.4847 1.2705 33 1 4.3583 2.7549 0.2499 34 1 5.8561 3.6005 4.6016 35 1 7.1188 2.8713 3.5808 36 1 8.8247 4.2434 2.5425 37 1 10.1172 6.3357 2.6356 38 1 11.0461 11.7989 3.9535 39 1 7.0846 8.0889 5.0887 40 1 5.7939 5.9965 4.9791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748240887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:11 Heat of formation + Delta-G solvation = -87.090865 kcal Electronic energy + Delta-G solvation = -21176.039553 eV Core-core repulsion = 17728.699866 eV Total energy + Delta-G solvation = -3447.339687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43753 -39.09159 -37.20874 -36.43365 -35.86798 -32.82071 -32.43542 -30.59557 -30.24648 -27.93275 -25.99499 -24.85041 -22.79387 -22.06816 -20.69555 -20.53051 -20.11463 -18.09175 -17.59080 -17.16857 -16.68760 -16.37511 -15.66324 -15.00081 -14.65325 -14.44691 -14.35374 -13.95166 -13.71035 -13.60708 -13.28966 -12.83051 -12.75655 -12.63420 -12.33530 -12.00965 -11.87548 -11.73432 -11.40805 -11.27526 -11.07085 -11.04502 -10.82819 -10.71925 -10.50426 -10.43368 -10.38305 -9.69083 -9.42099 -8.91646 -8.27790 -7.34032 -6.53200 -4.11887 1.89520 1.98346 2.14453 2.22564 2.96970 3.09292 3.11313 3.14797 3.90406 4.38460 4.43419 4.58597 4.71885 4.87476 4.92536 5.01945 5.14596 5.16412 5.19508 5.21203 5.25322 5.32062 5.45029 5.55593 5.63872 5.66206 5.76089 5.77881 5.95996 6.12142 6.27836 6.32449 6.41233 6.56073 6.59187 6.80059 6.96183 7.14263 7.26216 7.34676 7.70750 7.81388 7.91540 8.92017 9.59921 10.64234 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.002259 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.992260 B =12393.040928 C =12829.635409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.104 4.104 5 C -0.117 4.117 6 C 0.457 3.543 7 O -0.518 6.518 8 O -0.352 6.352 9 C 0.129 3.871 10 C -0.204 4.204 11 C -0.049 4.049 12 C -0.196 4.196 13 C 0.163 3.837 14 O -0.172 6.172 15 C -0.394 4.394 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.943 3.057 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.238 4.238 24 C -0.045 4.045 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.130 0.870 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 -15.544 -5.910 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.142 4.142 5 C -0.154 4.154 6 C 0.300 3.700 7 O -0.407 6.407 8 O -0.269 6.269 9 C 0.057 3.943 10 C -0.205 4.205 11 C -0.067 4.067 12 C -0.215 4.215 13 C 0.108 3.892 14 O -0.074 6.074 15 C -0.470 4.470 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.257 4.257 24 C -0.064 4.064 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.244 -15.524 -5.777 21.847 hybrid contribution -0.365 0.673 0.584 0.963 sum -14.609 -14.852 -5.193 21.470 Atomic orbital electron populations 1.23869 0.95989 1.01863 1.01643 1.22948 0.96031 0.98535 0.99442 1.20787 0.98191 0.95671 0.98654 1.21372 0.97869 0.95929 0.99009 1.21440 0.97106 1.00941 0.95940 1.23736 0.79886 0.80348 0.86024 1.90644 1.66876 1.36496 1.46684 1.86661 1.49361 1.41746 1.49090 1.21692 0.90013 0.96578 0.86044 1.18874 0.97376 0.95662 1.08626 1.20506 0.93591 0.96269 0.96370 1.20199 1.02659 0.92638 1.06012 1.19441 0.89998 0.87859 0.91907 1.83975 1.40031 1.16338 1.67093 1.21371 1.05853 0.86448 1.33289 0.88873 1.25327 0.96006 0.98003 0.97136 1.70035 1.14277 1.25105 1.39868 0.85685 0.79198 0.79443 0.78968 1.19796 1.20167 1.19107 1.21146 0.97674 0.99280 1.07608 1.20618 0.97590 0.91935 0.96214 0.88565 0.88584 0.87340 0.91181 0.90616 0.90848 0.90885 0.87697 0.87654 0.91287 0.91246 0.86897 0.86191 0.91861 0.85257 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 14.32 29.01 0.42 -0.84 16 2 C -0.15 -1.02 9.52 -36.03 -0.34 -1.37 16 3 C -0.10 -0.61 5.66 -27.89 -0.16 -0.77 16 4 C -0.10 -0.83 4.49 -26.73 -0.12 -0.95 16 5 C -0.12 -0.99 5.81 -27.88 -0.16 -1.16 16 6 C 0.46 5.87 7.96 36.00 0.29 6.16 16 7 O -0.52 -7.90 15.73 -18.75 -0.29 -8.20 16 8 O -0.35 -5.18 10.20 -39.26 -0.40 -5.58 16 9 C 0.13 1.94 5.59 36.01 0.20 2.14 16 10 C -0.20 -3.56 5.52 -104.58 -0.58 -4.14 16 11 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 12 C -0.20 -4.07 9.99 -39.39 -0.39 -4.46 16 13 C 0.16 3.87 6.65 -39.10 -0.26 3.61 16 14 O -0.17 -4.82 9.76 0.06 0.00 -4.82 16 15 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 16 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -24.71 13.67 55.48 0.76 -23.95 16 19 Si 0.94 20.09 29.55 -169.99 -5.02 15.06 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 C -0.24 -5.08 9.17 -39.39 -0.36 -5.45 16 24 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 25 H 0.10 0.56 7.84 -52.48 -0.41 0.15 16 26 H 0.10 0.53 8.06 -52.49 -0.42 0.10 16 27 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 28 H 0.07 0.41 7.79 -51.93 -0.40 0.01 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.13 2.74 5.64 -52.49 -0.30 2.45 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -31.21 351.12 -7.29 -38.50 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.58 Total: 2.88 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -2.04 Total: -19.20 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.76 Total: -23.95 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.69 Total: -18.59 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.21 -7.29 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748240887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.587 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds