Wall clock time and date at job start Tue Mar 31 2020 05:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00076 * 2 1 4 4 C 1.53000 * 109.47296 * 124.99373 * 3 2 1 5 5 C 1.53006 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46884 * 180.02562 * 5 4 3 7 7 O 1.20821 * 120.00185 * 359.97438 * 6 5 4 8 8 O 1.34231 * 120.00087 * 180.02562 * 6 5 4 9 9 C 1.45196 * 117.00047 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47037 * 179.97438 * 9 8 6 11 11 C 1.38294 * 119.93130 * 269.73094 * 10 9 8 12 12 C 1.38099 * 120.07055 * 179.72623 * 11 10 9 13 13 C 1.38885 * 119.92916 * 0.56465 * 12 11 10 14 14 O 1.35746 * 120.07221 * 179.68553 * 13 12 11 15 15 C 1.34828 * 117.00240 * 174.48968 * 14 13 12 16 16 H 1.08006 * 120.00054 * 5.05118 * 15 14 13 17 17 C 1.38655 * 120.00332 * 185.05591 * 15 14 13 18 18 N 1.31553 * 119.99844 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00136 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46869 * 89.99930 * 19 17 15 21 21 H 1.48504 * 109.46954 * 209.99804 * 19 17 15 22 22 H 1.48494 * 109.47063 * 330.00052 * 19 17 15 23 23 C 1.38888 * 119.85809 * 359.70827 * 13 12 11 24 24 C 1.38097 * 119.93011 * 359.97438 * 23 13 12 25 25 H 1.08004 * 120.00224 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99909 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00003 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47125 * 4.99611 * 3 2 1 29 29 H 1.09000 * 109.47515 * 244.99666 * 3 2 1 30 30 H 1.09001 * 109.46840 * 60.00063 * 4 3 2 31 31 H 1.08996 * 109.47183 * 300.00076 * 4 3 2 32 32 H 1.09001 * 109.47150 * 60.00408 * 5 4 3 33 33 H 1.08996 * 109.47345 * 300.00132 * 5 4 3 34 34 H 1.08996 * 109.47566 * 299.99750 * 9 8 6 35 35 H 1.09002 * 109.47418 * 60.00155 * 9 8 6 36 36 H 1.08001 * 119.96614 * 359.97036 * 11 10 9 37 37 H 1.08000 * 120.04137 * 180.26759 * 12 11 10 38 38 H 0.97003 * 120.00423 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.03290 * 179.97438 * 23 13 12 40 40 H 1.07997 * 119.96090 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 6 4.7577 2.6853 2.3448 7 8 4.8209 1.7423 3.0975 8 8 5.5394 3.7578 2.5457 9 6 6.4368 3.7151 3.6863 10 6 7.2291 4.9955 3.7505 11 6 8.4445 5.0884 3.0973 12 6 9.1701 6.2622 3.1495 13 6 8.6837 7.3462 3.8687 14 8 9.3976 8.4993 3.9272 15 6 8.8173 9.5479 4.5448 16 1 7.8634 9.4249 5.0363 17 6 9.4450 10.7842 4.5491 18 7 10.6071 10.9340 3.9509 19 14 8.6407 12.2372 5.4043 20 1 9.0836 12.2849 6.8209 21 1 9.0349 13.4947 4.7197 22 1 7.1643 12.0869 5.3520 23 6 7.4654 7.2478 4.5283 24 6 6.7414 6.0734 4.4667 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9313 30 1 3.7399 0.5066 1.0922 31 1 2.4771 1.2357 2.1130 32 1 3.0957 3.4847 1.2705 33 1 4.3583 2.7549 0.2499 34 1 5.8561 3.6005 4.6016 35 1 7.1188 2.8713 3.5808 36 1 8.8247 4.2434 2.5425 37 1 10.1172 6.3357 2.6356 38 1 11.0461 11.7989 3.9535 39 1 7.0846 8.0889 5.0887 40 1 5.7939 5.9965 4.9791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748240887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:10 Heat of formation + Delta-G solvation = -103.273984 kcal Electronic energy + Delta-G solvation = -21176.741306 eV Core-core repulsion = 17728.699866 eV Total energy + Delta-G solvation = -3448.041440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53632 -40.77200 -38.64049 -37.52626 -36.75687 -34.37536 -33.45334 -32.09865 -31.82998 -28.71976 -27.67489 -26.37432 -23.70041 -23.59038 -22.19261 -21.43791 -20.65041 -19.90751 -18.92760 -18.60471 -17.69138 -17.52332 -16.54753 -16.32590 -16.22826 -15.85069 -15.57468 -15.40195 -15.00004 -14.66391 -14.46564 -14.32078 -13.91608 -13.78041 -13.55837 -13.32894 -13.03577 -12.69720 -12.59526 -12.50786 -12.43306 -12.22938 -12.12177 -11.79619 -11.72247 -11.59801 -11.44510 -11.21071 -10.82103 -10.17874 -9.85223 -9.06721 -8.49342 -6.17880 0.43575 0.54436 1.23187 1.35880 1.42243 1.44638 1.53286 1.90289 2.16813 2.81851 3.13711 3.44908 3.70874 3.82170 3.90535 3.91820 4.04774 4.13665 4.29081 4.29240 4.37372 4.41554 4.53742 4.64990 4.66218 4.72327 4.73186 4.94784 4.98028 5.08067 5.11459 5.21308 5.21586 5.35977 5.45136 5.56731 5.64937 5.68044 5.80886 5.92987 5.99545 6.11025 6.77866 6.95047 7.72867 8.73274 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.002259 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.992260 B =12393.040928 C =12829.635409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.091 4.091 4 C -0.099 4.099 5 C -0.111 4.111 6 C 0.457 3.543 7 O -0.544 6.544 8 O -0.361 6.361 9 C 0.129 3.871 10 C -0.182 4.182 11 C -0.042 4.042 12 C -0.206 4.206 13 C 0.125 3.875 14 O -0.226 6.226 15 C -0.416 4.416 16 H 0.104 0.896 17 C -0.021 4.021 18 N -0.917 5.917 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.252 1.252 23 C -0.245 4.245 24 C -0.044 4.044 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.150 0.850 37 H 0.120 0.880 38 H 0.274 0.726 39 H 0.124 0.876 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.291 -17.085 -6.235 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.183 4.183 3 C -0.128 4.128 4 C -0.136 4.136 5 C -0.148 4.148 6 C 0.302 3.698 7 O -0.435 6.435 8 O -0.278 6.278 9 C 0.057 3.943 10 C -0.183 4.183 11 C -0.060 4.060 12 C -0.225 4.225 13 C 0.074 3.926 14 O -0.132 6.132 15 C -0.492 4.492 16 H 0.121 0.879 17 C -0.219 4.219 18 N -0.555 5.555 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.264 4.264 24 C -0.062 4.062 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.127 0.873 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.167 0.833 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.862 -17.126 -6.109 24.799 hybrid contribution 0.276 0.735 0.612 0.995 sum -16.586 -16.391 -5.498 23.958 Atomic orbital electron populations 1.24028 0.96048 1.02495 1.01059 1.23069 0.96333 0.98888 0.99989 1.20757 0.97993 0.95740 0.98306 1.21312 0.97773 0.95419 0.99142 1.21591 0.96619 1.01771 0.94793 1.24547 0.79506 0.79219 0.86536 1.90643 1.67637 1.37285 1.47913 1.86636 1.49664 1.42817 1.48671 1.21625 0.90517 0.95169 0.87018 1.19268 0.96970 0.96145 1.05876 1.20901 0.93240 0.96052 0.95798 1.20457 1.03169 0.93057 1.05791 1.19997 0.91336 0.87665 0.93606 1.83947 1.41966 1.17752 1.69549 1.21857 1.06511 0.87074 1.33739 0.87855 1.26608 0.96555 1.00909 0.97842 1.70177 1.16462 1.26018 1.42836 0.84577 0.78693 0.75093 0.77808 1.18811 1.19594 1.17577 1.21254 0.97240 1.00512 1.07436 1.20960 0.98385 0.90856 0.96019 0.88025 0.88008 0.87304 0.90370 0.89499 0.91764 0.92253 0.85759 0.85504 0.90193 0.89897 0.83251 0.86212 0.91730 0.85783 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 14.32 67.78 0.97 -1.21 16 2 C -0.16 -1.92 9.52 25.64 0.24 -1.67 16 3 C -0.09 -0.92 5.66 29.85 0.17 -0.75 16 4 C -0.10 -1.34 4.49 30.60 0.14 -1.21 16 5 C -0.11 -1.50 5.81 29.85 0.17 -1.33 16 6 C 0.46 10.33 7.96 71.24 0.57 10.89 16 7 O -0.54 -15.28 15.73 21.98 0.35 -14.93 16 8 O -0.36 -9.31 10.20 -51.43 -0.52 -9.83 16 9 C 0.13 3.40 5.59 71.24 0.40 3.79 16 10 C -0.18 -5.78 5.52 -19.83 -0.11 -5.89 16 11 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 12 C -0.21 -8.57 9.99 22.39 0.22 -8.34 16 13 C 0.13 6.13 6.65 22.58 0.15 6.28 16 14 O -0.23 -13.41 9.76 -22.68 -0.22 -13.63 16 15 C -0.42 -23.81 9.49 67.92 0.64 -23.17 16 16 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 17 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 18 N -0.92 -55.51 13.67 21.61 0.30 -55.21 16 19 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 22 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 23 C -0.25 -10.49 9.17 22.39 0.21 -10.28 16 24 C -0.04 -1.52 9.69 22.25 0.22 -1.30 16 25 H 0.10 0.97 7.84 -2.91 -0.02 0.95 16 26 H 0.10 0.95 8.06 -2.91 -0.02 0.93 16 27 H 0.11 1.21 8.06 -2.91 -0.02 1.19 16 28 H 0.08 0.67 7.79 -2.39 -0.02 0.66 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 31 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 32 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 35 H 0.08 2.00 8.07 -2.39 -0.02 1.98 16 36 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 38 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.12 5.34 5.64 -2.91 -0.02 5.33 16 40 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -71.41 351.12 7.62 -63.79 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 1.02 Total: 21.81 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 4.67 Total: -36.08 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.30 Total: -55.21 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.40 Total: -38.39 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -71.41 7.62 -63.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748240887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.480 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds