Wall clock time and date at job start Tue Mar 31 2020 06:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35893 * 117.00044 * 2 1 4 4 C 1.38751 * 120.05661 * 5.60468 * 3 2 1 5 5 C 1.38126 * 119.94645 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05370 * 0.02562 * 5 4 3 7 7 C 1.38249 * 120.11204 * 359.97438 * 6 5 4 8 8 C 1.38164 * 120.05517 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02598 * 179.97438 * 8 7 6 10 10 C 1.50709 * 115.54671 * 95.15976 * 9 8 7 11 11 O 1.20824 * 119.99979 * 113.43871 * 10 9 8 12 12 O 1.34233 * 119.99673 * 293.43760 * 10 9 8 13 13 C 1.45201 * 116.99914 * 176.96029 * 12 10 9 14 14 C 1.52997 * 109.46960 * 183.81554 * 13 12 10 15 15 C 1.50703 * 109.46800 * 184.49098 * 14 13 12 16 16 H 1.07998 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99977 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99748 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00165 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47055 * 89.99846 * 19 17 15 21 21 H 1.48497 * 109.46947 * 209.99973 * 19 17 15 22 22 H 1.48496 * 109.46948 * 330.00113 * 19 17 15 23 23 C 1.52993 * 117.50565 * 309.45033 * 9 8 7 24 24 C 1.52998 * 117.50076 * 240.82291 * 9 8 7 25 25 H 1.09006 * 109.47498 * 179.70559 * 1 2 3 26 26 H 1.08993 * 109.47570 * 299.71058 * 1 2 3 27 27 H 1.09006 * 109.47096 * 59.71060 * 1 2 3 28 28 H 1.08003 * 120.03006 * 0.25385 * 4 3 2 29 29 H 1.08000 * 119.97140 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.94542 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.96695 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.47087 * 303.81682 * 13 12 10 33 33 H 1.09003 * 109.46982 * 63.81648 * 13 12 10 34 34 H 1.08998 * 109.47016 * 304.49142 * 14 13 12 35 35 H 1.08999 * 109.47157 * 64.49785 * 14 13 12 36 36 H 0.97002 * 119.99756 * 179.97438 * 18 17 15 37 37 H 1.09009 * 117.49629 * 359.97438 * 23 9 8 38 38 H 1.09001 * 117.50529 * 145.01805 * 23 9 8 39 39 H 1.09004 * 117.50140 * 214.98080 * 24 9 8 40 40 H 1.08993 * 117.49665 * 359.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2965 2.3726 0.1173 5 6 1.9260 3.6021 0.1176 6 6 3.3020 3.6757 0.0005 7 6 4.0509 2.5196 -0.1165 8 6 3.4261 1.2873 -0.1162 9 6 4.2431 0.0275 -0.2443 10 6 4.6121 -0.6427 1.0541 11 8 4.1549 -1.7277 1.3252 12 8 5.4489 -0.0342 1.9093 13 6 5.7068 -0.7066 3.1701 14 6 6.5999 0.1752 4.0450 15 6 6.9580 -0.5675 5.3065 16 1 6.5861 -1.5686 5.4677 17 6 7.7603 0.0309 6.2547 18 7 8.2127 1.2502 6.0585 19 14 8.2048 -0.8900 7.8180 20 1 9.4579 -1.6568 7.6015 21 1 8.4030 0.0802 8.9246 22 1 7.1067 -1.8254 8.1706 23 6 5.2547 -0.0451 -1.3898 24 6 3.9692 -0.8725 -1.4509 25 1 -0.3634 -1.0277 -0.0053 26 1 -0.3634 0.5093 0.8925 27 1 -0.3633 0.5183 -0.8874 28 1 0.2223 2.3155 0.2128 29 1 1.3431 4.5067 0.2084 30 1 3.7924 4.6380 0.0014 31 1 5.1254 2.5798 -0.2073 32 1 4.7631 -0.8906 3.6834 33 1 6.2080 -1.6557 2.9798 34 1 7.5100 0.4250 3.4997 35 1 6.0670 1.0909 4.3015 36 1 8.7769 1.6713 6.7258 37 1 5.3291 0.8183 -2.0511 38 1 6.1877 -0.5775 -1.2044 39 1 4.0564 -1.9493 -1.3058 40 1 3.1978 -0.5536 -2.1518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749294587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:00 Heat of formation + Delta-G solvation = -77.927535 kcal Electronic energy + Delta-G solvation = -22866.748073 eV Core-core repulsion = 19419.805737 eV Total energy + Delta-G solvation = -3446.942336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.74449 -39.66134 -37.69049 -36.77953 -35.65704 -33.29387 -30.94599 -30.23691 -30.15054 -27.40545 -25.77043 -24.32104 -22.89303 -22.40824 -21.70956 -20.82307 -19.62510 -18.23738 -17.26495 -16.48942 -16.10694 -15.99567 -15.86512 -15.66779 -15.35166 -14.61321 -14.49961 -14.35278 -13.76604 -13.47728 -13.00292 -12.77045 -12.50396 -12.34274 -12.09179 -11.76408 -11.60335 -11.29217 -11.20897 -11.15101 -10.98173 -10.74188 -10.68758 -10.56973 -10.37969 -10.03370 -9.59637 -9.57727 -9.27029 -8.91239 -8.41367 -8.22643 -6.07517 -4.11580 1.18182 1.37159 2.62050 3.16566 3.20785 3.30299 3.36245 3.41042 3.60342 3.76650 4.40558 4.42046 4.70079 4.76519 4.91455 4.93804 5.00619 5.02625 5.12602 5.28813 5.28997 5.35344 5.36798 5.57106 5.61187 5.70879 5.81312 5.92256 6.05922 6.14412 6.17450 6.21039 6.33534 6.47302 6.69095 6.70330 7.07633 7.31101 7.60442 7.67047 7.90663 8.25146 8.37105 8.93884 9.52489 11.04016 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.003789 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.323811 B = 7387.380063 C = 7714.941904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.141 3.859 4 C -0.213 4.213 5 C -0.077 4.077 6 C -0.157 4.157 7 C -0.055 4.055 8 C -0.083 4.083 9 C -0.084 4.084 10 C 0.496 3.504 11 O -0.508 6.508 12 O -0.350 6.350 13 C 0.074 3.926 14 C 0.026 3.974 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.151 4.151 24 C -0.128 4.128 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.604 3.285 -17.602 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.096 3.904 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.176 4.176 7 C -0.073 4.073 8 C -0.084 4.084 9 C -0.085 4.085 10 C 0.338 3.662 11 O -0.396 6.396 12 O -0.266 6.266 13 C 0.002 3.998 14 C -0.011 4.011 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.188 4.188 24 C -0.165 4.165 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.525 2.892 -17.383 22.214 hybrid contribution -0.080 -0.336 1.191 1.240 sum -13.605 2.556 -16.192 21.303 Atomic orbital electron populations 1.23062 0.78775 1.03970 1.01057 1.86221 1.20902 1.26245 1.88156 1.18863 0.91546 0.84590 0.95441 1.21182 1.00080 0.92298 1.09654 1.20966 0.94795 0.96875 0.96881 1.21062 0.93883 0.98497 1.04113 1.20947 1.00449 0.90504 0.95383 1.18048 0.89529 0.92782 1.08036 1.19214 1.04337 0.97284 0.87668 1.22161 0.75946 0.83384 0.84660 1.90608 1.51644 1.21359 1.75991 1.86528 1.58506 1.52022 1.29527 1.23642 1.00221 0.96922 0.79021 1.19154 0.94228 0.95110 0.92634 1.20993 1.31352 1.01357 1.02676 0.92300 1.24976 0.95667 0.94946 0.98522 1.69979 1.34287 1.13193 1.35391 0.86481 0.78911 0.79505 0.82479 1.20473 1.21054 1.19735 1.23189 0.94348 1.03153 0.98086 1.22998 0.98825 0.98309 0.96329 0.88236 0.92751 0.92819 0.85411 0.85770 0.85491 0.84638 0.92570 0.92324 0.95270 0.95458 0.92753 0.87389 0.87682 0.87612 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.83 101.05 0.99 1.23 16 2 O -0.30 -4.14 9.48 -19.40 -0.18 -4.32 16 3 C 0.14 1.95 6.60 -39.22 -0.26 1.69 16 4 C -0.21 -2.44 9.05 -39.43 -0.36 -2.80 16 5 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 6 C -0.16 -1.78 10.04 -39.56 -0.40 -2.18 16 7 C -0.05 -0.71 9.45 -39.60 -0.37 -1.09 16 8 C -0.08 -1.21 5.00 -104.47 -0.52 -1.73 16 9 C -0.08 -1.28 1.72 -156.81 -0.27 -1.55 16 10 C 0.50 9.82 7.19 36.01 0.26 10.08 16 11 O -0.51 -11.13 16.45 -18.75 -0.31 -11.44 16 12 O -0.35 -7.63 10.22 -39.26 -0.40 -8.03 16 13 C 0.07 1.77 5.43 37.16 0.20 1.97 16 14 C 0.03 0.70 5.35 -27.88 -0.15 0.55 16 15 C -0.53 -15.15 9.11 -34.44 -0.31 -15.46 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 19 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.15 -1.78 9.68 -26.73 -0.26 -2.04 16 24 C -0.13 -1.59 9.20 -26.73 -0.25 -1.83 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.45 7.43 -51.93 -0.39 0.06 16 27 H 0.05 0.37 7.89 -51.93 -0.41 -0.03 16 28 H 0.13 1.14 6.31 -52.48 -0.33 0.81 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.14 1.62 8.05 -52.49 -0.42 1.20 16 32 H 0.06 1.33 8.09 -51.93 -0.42 0.91 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.11 1.03 8.12 -51.92 -0.42 0.61 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.11 1.37 8.02 -51.93 -0.42 0.95 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -33.74 348.38 -7.85 -41.59 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.73 Total: -1.05 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.19 Total: -12.71 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.98 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.89 Total: -23.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.74 -7.85 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749294587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.340 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds