Wall clock time and date at job start Tue Mar 31 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35893 * 117.00044 * 2 1 4 4 C 1.38751 * 120.05661 * 5.60468 * 3 2 1 5 5 C 1.38126 * 119.94645 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05370 * 0.02562 * 5 4 3 7 7 C 1.38249 * 120.11204 * 359.97438 * 6 5 4 8 8 C 1.38164 * 120.05517 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02598 * 179.97438 * 8 7 6 10 10 C 1.50709 * 115.54671 * 95.15976 * 9 8 7 11 11 O 1.20824 * 119.99979 * 113.43871 * 10 9 8 12 12 O 1.34233 * 119.99673 * 293.43760 * 10 9 8 13 13 C 1.45201 * 116.99914 * 176.96029 * 12 10 9 14 14 C 1.52997 * 109.46960 * 183.81554 * 13 12 10 15 15 C 1.50703 * 109.46800 * 184.49098 * 14 13 12 16 16 H 1.07998 * 119.99948 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99977 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99748 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00165 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47055 * 89.99846 * 19 17 15 21 21 H 1.48497 * 109.46947 * 209.99973 * 19 17 15 22 22 H 1.48496 * 109.46948 * 330.00113 * 19 17 15 23 23 C 1.52993 * 117.50565 * 309.45033 * 9 8 7 24 24 C 1.52998 * 117.50076 * 240.82291 * 9 8 7 25 25 H 1.09006 * 109.47498 * 179.70559 * 1 2 3 26 26 H 1.08993 * 109.47570 * 299.71058 * 1 2 3 27 27 H 1.09006 * 109.47096 * 59.71060 * 1 2 3 28 28 H 1.08003 * 120.03006 * 0.25385 * 4 3 2 29 29 H 1.08000 * 119.97140 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.94542 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.96695 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.47087 * 303.81682 * 13 12 10 33 33 H 1.09003 * 109.46982 * 63.81648 * 13 12 10 34 34 H 1.08998 * 109.47016 * 304.49142 * 14 13 12 35 35 H 1.08999 * 109.47157 * 64.49785 * 14 13 12 36 36 H 0.97002 * 119.99756 * 179.97438 * 18 17 15 37 37 H 1.09009 * 117.49629 * 359.97438 * 23 9 8 38 38 H 1.09001 * 117.50529 * 145.01805 * 23 9 8 39 39 H 1.09004 * 117.50140 * 214.98080 * 24 9 8 40 40 H 1.08993 * 117.49665 * 359.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2965 2.3726 0.1173 5 6 1.9260 3.6021 0.1176 6 6 3.3020 3.6757 0.0005 7 6 4.0509 2.5196 -0.1165 8 6 3.4261 1.2873 -0.1162 9 6 4.2431 0.0275 -0.2443 10 6 4.6121 -0.6427 1.0541 11 8 4.1549 -1.7277 1.3252 12 8 5.4489 -0.0342 1.9093 13 6 5.7068 -0.7066 3.1701 14 6 6.5999 0.1752 4.0450 15 6 6.9580 -0.5675 5.3065 16 1 6.5861 -1.5686 5.4677 17 6 7.7603 0.0309 6.2547 18 7 8.2127 1.2502 6.0585 19 14 8.2048 -0.8900 7.8180 20 1 9.4579 -1.6568 7.6015 21 1 8.4030 0.0802 8.9246 22 1 7.1067 -1.8254 8.1706 23 6 5.2547 -0.0451 -1.3898 24 6 3.9692 -0.8725 -1.4509 25 1 -0.3634 -1.0277 -0.0053 26 1 -0.3634 0.5093 0.8925 27 1 -0.3633 0.5183 -0.8874 28 1 0.2223 2.3155 0.2128 29 1 1.3431 4.5067 0.2084 30 1 3.7924 4.6380 0.0014 31 1 5.1254 2.5798 -0.2073 32 1 4.7631 -0.8906 3.6834 33 1 6.2080 -1.6557 2.9798 34 1 7.5100 0.4250 3.4997 35 1 6.0670 1.0909 4.3015 36 1 8.7769 1.6713 6.7258 37 1 5.3291 0.8183 -2.0511 38 1 6.1877 -0.5775 -1.2044 39 1 4.0564 -1.9493 -1.3058 40 1 3.1978 -0.5536 -2.1518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749294587.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:59 Heat of formation + Delta-G solvation = -96.479107 kcal Electronic energy + Delta-G solvation = -22867.552530 eV Core-core repulsion = 19419.805737 eV Total energy + Delta-G solvation = -3447.746792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95522 -40.94004 -38.73402 -38.00119 -37.14475 -35.46667 -32.37521 -31.81996 -31.01949 -28.16315 -27.56592 -25.87672 -23.93021 -23.56528 -22.80200 -22.61017 -20.97696 -19.34457 -18.72080 -18.17892 -17.70788 -17.50598 -16.95166 -16.63399 -16.58001 -16.39210 -15.59221 -15.29022 -14.99026 -14.76449 -14.53508 -14.39855 -13.86065 -13.60175 -13.18456 -13.08569 -12.90077 -12.67194 -12.62845 -12.59667 -12.49584 -12.21643 -11.99913 -11.89243 -11.57519 -11.54925 -11.50152 -11.38442 -11.22299 -10.63145 -9.85893 -9.14440 -8.28506 -6.42336 0.24736 0.46834 1.10101 1.39457 1.41941 1.52707 1.68955 2.38670 2.39323 2.60362 2.79321 3.05475 3.42975 3.64860 3.80462 3.87276 4.02987 4.10040 4.15144 4.20322 4.28630 4.38386 4.42218 4.52640 4.61049 4.64299 4.67990 4.70826 4.73827 4.87688 5.02691 5.11878 5.22711 5.33524 5.41977 5.46666 5.50193 5.58450 5.70922 5.85497 6.03961 6.45823 6.68070 6.72606 7.27387 8.84196 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018340 B = 0.003789 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.323811 B = 7387.380063 C = 7714.941904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.123 3.877 4 C -0.216 4.216 5 C -0.074 4.074 6 C -0.162 4.162 7 C -0.069 4.069 8 C -0.108 4.108 9 C -0.106 4.106 10 C 0.493 3.507 11 O -0.536 6.536 12 O -0.358 6.358 13 C 0.089 3.911 14 C 0.035 3.965 15 C -0.553 4.553 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.974 3.026 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.265 1.265 23 C -0.131 4.131 24 C -0.115 4.115 25 H 0.110 0.890 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.156 0.844 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.009 0.991 35 H 0.003 0.997 36 H 0.269 0.731 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 3.769 -18.047 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.078 3.922 4 C -0.234 4.234 5 C -0.092 4.092 6 C -0.180 4.180 7 C -0.087 4.087 8 C -0.109 4.109 9 C -0.107 4.107 10 C 0.337 3.663 11 O -0.425 6.425 12 O -0.274 6.274 13 C 0.016 3.984 14 C -0.002 4.002 15 C -0.591 4.591 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.798 3.202 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.168 4.168 24 C -0.152 4.152 25 H 0.128 0.872 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.169 0.831 29 H 0.174 0.826 30 H 0.166 0.834 31 H 0.155 0.845 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.028 0.972 35 H 0.022 0.978 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.414 3.376 -17.853 23.192 hybrid contribution 0.122 -0.439 1.276 1.355 sum -14.292 2.937 -16.577 22.083 Atomic orbital electron populations 1.23326 0.76758 1.05210 1.02322 1.86174 1.23169 1.26727 1.88312 1.19117 0.91701 0.85388 0.96016 1.21512 1.01285 0.91834 1.08773 1.21387 0.94807 0.97810 0.95223 1.21391 0.94461 0.98831 1.03364 1.21123 1.00848 0.90824 0.95899 1.18165 0.90075 0.92650 1.09991 1.19276 1.07022 0.98602 0.85795 1.23180 0.74531 0.83153 0.85449 1.90575 1.52427 1.22734 1.76802 1.86533 1.59580 1.52248 1.29078 1.23188 0.99213 0.96135 0.79873 1.18945 0.93607 0.94650 0.92987 1.21355 1.32166 1.01860 1.03680 0.91873 1.25962 0.95137 0.95806 1.02187 1.70098 1.34676 1.14779 1.36846 0.85311 0.78963 0.78261 0.77695 1.19357 1.20161 1.18885 1.23358 0.93738 1.03674 0.96024 1.23064 0.99736 0.97592 0.94800 0.87172 0.92252 0.90661 0.83069 0.82639 0.83369 0.84479 0.93018 0.92122 0.97247 0.97821 0.92246 0.84667 0.87778 0.88495 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.83 113.37 1.11 1.41 16 2 O -0.33 -8.88 9.48 -92.35 -0.88 -9.76 16 3 C 0.12 3.31 6.60 22.51 0.15 3.46 16 4 C -0.22 -4.51 9.05 22.37 0.20 -4.31 16 5 C -0.07 -1.40 10.04 22.25 0.22 -1.17 16 6 C -0.16 -3.39 10.04 22.28 0.22 -3.17 16 7 C -0.07 -1.75 9.45 22.25 0.21 -1.54 16 8 C -0.11 -3.10 5.00 -19.77 -0.10 -3.19 16 9 C -0.11 -3.23 1.72 -53.67 -0.09 -3.32 16 10 C 0.49 20.00 7.19 71.24 0.51 20.51 16 11 O -0.54 -24.18 16.45 21.97 0.36 -23.82 16 12 O -0.36 -16.17 10.22 -51.44 -0.53 -16.70 16 13 C 0.09 4.37 5.43 71.98 0.39 4.76 16 14 C 0.04 1.99 5.35 29.85 0.16 2.15 16 15 C -0.55 -32.41 9.11 25.60 0.23 -32.18 16 16 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 17 C 0.01 0.48 5.46 84.65 0.46 0.94 16 18 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 19 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 23 C -0.13 -2.96 9.68 30.59 0.30 -2.66 16 24 C -0.12 -2.78 9.20 30.59 0.28 -2.50 16 25 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.06 0.90 7.43 -2.39 -0.02 0.88 16 27 H 0.07 0.89 7.89 -2.38 -0.02 0.87 16 28 H 0.15 2.30 6.31 -2.91 -0.02 2.29 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.14 3.26 8.05 -2.91 -0.02 3.23 16 32 H 0.05 2.55 8.09 -2.39 -0.02 2.53 16 33 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.14 2.29 8.12 -2.38 -0.02 2.27 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.10 2.50 8.02 -2.39 -0.02 2.48 16 40 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -73.97 348.38 6.57 -67.40 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.03 Total: 13.17 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.27 Total: -20.80 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.28 Total: -55.88 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -1.04 Total: -50.27 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -73.97 6.57 -67.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749294587.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.075 kcal (2) G-P(sol) polarization free energy of solvation -73.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds