Wall clock time and date at job start Tue Mar 31 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 C 1.52994 * 109.47249 * 120.00093 * 2 1 3 5 5 C 1.50702 * 109.47119 * 174.99906 * 4 2 1 6 6 O 1.20762 * 119.99813 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00346 * 180.02562 * 5 4 2 8 8 O 1.45200 * 109.47422 * 179.97438 * 7 5 4 9 9 C 1.34701 * 117.00169 * 179.97438 * 8 7 5 10 10 O 1.21471 * 120.00074 * 0.02562 * 9 8 7 11 11 C 1.47769 * 120.00069 * 179.97438 * 9 8 7 12 12 C 1.39960 * 120.03302 * 359.97438 * 11 9 8 13 13 C 1.38317 * 120.35753 * 180.02562 * 12 11 9 14 14 C 1.37755 * 120.41703 * 359.97438 * 13 12 11 15 15 C 1.40757 * 120.05004 * 0.02562 * 14 13 12 16 16 C 1.41439 * 120.17704 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99698 * 24.41558 * 16 15 14 18 18 C 1.39932 * 120.00172 * 204.41934 * 16 15 14 19 19 N 1.30824 * 120.00201 * 17.84828 * 18 16 15 20 20 Si 1.86806 * 119.99927 * 197.84744 * 18 16 15 21 21 H 1.48496 * 109.47243 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46953 * 120.00169 * 20 18 16 23 23 H 1.48506 * 109.46942 * 240.00042 * 20 18 16 24 24 C 1.39059 * 120.03051 * 180.02562 * 11 9 8 25 25 H 1.09004 * 109.46827 * 299.99571 * 1 2 3 26 26 H 1.09002 * 109.47549 * 59.99861 * 1 2 3 27 27 H 1.09003 * 109.47435 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46827 * 240.00429 * 2 1 3 29 29 H 1.08995 * 109.47511 * 60.00218 * 3 2 1 30 30 H 1.09003 * 109.46958 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47365 * 299.99948 * 3 2 1 32 32 H 1.09004 * 109.47215 * 55.00503 * 4 2 1 33 33 H 1.08993 * 109.47378 * 294.99697 * 4 2 1 34 34 H 1.09004 * 109.47480 * 59.99632 * 7 5 4 35 35 H 1.09004 * 109.46959 * 299.99960 * 7 5 4 36 36 H 1.08008 * 119.82112 * 359.97438 * 12 11 9 37 37 H 1.08005 * 119.79035 * 180.02562 * 13 12 11 38 38 H 1.08001 * 119.97827 * 179.97438 * 14 13 12 39 39 H 0.96997 * 120.00007 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.20114 * 359.70048 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8294 1.1888 6 8 4.1424 -0.3767 0.2438 7 6 4.2945 -1.5034 2.3069 8 8 5.7168 -1.4803 2.0159 9 6 6.5359 -2.0462 2.9233 10 8 6.0746 -2.5458 3.9298 11 6 7.9956 -2.0604 2.6936 12 6 8.5278 -1.4864 1.5333 13 6 9.8930 -1.4964 1.3113 14 6 10.7447 -2.0705 2.2292 15 6 10.2282 -2.6527 3.4021 16 6 11.1002 -3.2434 4.3461 17 1 12.1321 -2.9289 4.3987 18 6 10.6260 -4.2352 5.2119 19 7 9.5117 -4.8638 4.9387 20 14 11.5842 -4.6617 6.7577 21 1 12.8002 -3.8131 6.8363 22 1 10.7334 -4.4185 7.9503 23 1 11.9802 -6.0924 6.7156 24 6 8.8417 -2.6449 3.6296 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6055 -1.7199 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 3.9596 -2.5366 2.3993 35 1 4.1059 -0.9754 3.2417 36 1 7.8687 -1.0340 0.8069 37 1 10.2938 -1.0505 0.4129 38 1 11.8095 -2.0747 2.0485 39 1 9.1832 -5.5515 5.5386 40 1 8.4361 -3.0855 4.5283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751645452.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:59 Heat of formation + Delta-G solvation = -137.276014 kcal Electronic energy + Delta-G solvation = -22066.529821 eV Core-core repulsion = 18617.013942 eV Total energy + Delta-G solvation = -3449.515879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69205 -40.63987 -39.17889 -37.41486 -36.48160 -35.63968 -32.42252 -31.44108 -31.19851 -28.20029 -27.95598 -27.22865 -24.84454 -22.88950 -21.81211 -21.53175 -20.47585 -19.66802 -18.28456 -17.94930 -17.75396 -17.06420 -16.77354 -16.52696 -16.29549 -15.85204 -15.28024 -15.13310 -14.91120 -14.51188 -14.39113 -14.15415 -13.68792 -13.53597 -13.32613 -13.03429 -13.01796 -12.82358 -12.75958 -12.60413 -12.22739 -12.15113 -12.07405 -11.87381 -11.75215 -11.57592 -11.57163 -11.40190 -11.10927 -10.58357 -9.65326 -9.47855 -8.70245 -6.41270 0.08091 0.84691 0.93606 1.38308 1.44243 1.46857 1.54720 1.75177 2.19067 2.69756 2.90759 3.60135 3.74996 3.88918 3.96898 4.06743 4.10112 4.13112 4.37762 4.41176 4.59609 4.69044 4.71591 4.73879 4.80720 4.86102 5.02439 5.04201 5.09179 5.10402 5.16020 5.26237 5.31009 5.41770 5.43634 5.49118 5.78151 5.86787 5.98467 6.19547 6.43096 6.50694 6.74706 6.84255 6.86024 8.27684 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.003030 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.438320 B = 9238.370701 C = 9982.375836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.157 4.157 4 C -0.152 4.152 5 C 0.362 3.638 6 O -0.464 6.464 7 C -0.004 4.004 8 O -0.345 6.345 9 C 0.517 3.483 10 O -0.538 6.538 11 C -0.130 4.130 12 C -0.185 4.185 13 C -0.099 4.099 14 C -0.203 4.203 15 C 0.065 3.935 16 C -0.491 4.491 17 H 0.088 0.912 18 C 0.030 3.970 19 N -0.825 5.825 20 Si 0.985 3.015 21 H -0.252 1.252 22 H -0.269 1.269 23 H -0.264 1.264 24 C -0.120 4.120 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.289 0.711 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.451 6.578 -4.639 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.214 4.214 4 C -0.188 4.188 5 C 0.238 3.762 6 O -0.338 6.338 7 C -0.078 4.078 8 O -0.261 6.261 9 C 0.365 3.635 10 O -0.430 6.430 11 C -0.131 4.131 12 C -0.205 4.205 13 C -0.117 4.117 14 C -0.223 4.223 15 C 0.063 3.937 16 C -0.520 4.520 17 H 0.106 0.894 18 C -0.185 4.185 19 N -0.450 5.450 20 Si 0.806 3.194 21 H -0.175 1.175 22 H -0.194 1.194 23 H -0.189 1.189 24 C -0.140 4.140 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.462 6.497 -4.800 17.445 hybrid contribution 0.349 -0.550 0.817 1.044 sum -15.113 5.948 -3.983 16.723 Atomic orbital electron populations 1.21806 0.92752 1.02692 1.02650 1.20959 0.97011 0.96056 0.96838 1.21972 1.01010 0.96156 1.02250 1.22212 0.88985 1.05580 1.02058 1.24995 0.93166 0.74188 0.83888 1.90417 1.72406 1.37647 1.33307 1.23925 0.77496 1.05030 1.01363 1.86657 1.19267 1.72478 1.47731 1.21675 0.88369 0.73553 0.79946 1.90736 1.77951 1.44919 1.29396 1.19072 0.87735 1.06837 0.99438 1.20907 0.95791 1.06123 0.97639 1.20938 0.92693 0.98965 0.99106 1.21496 0.99381 1.06570 0.94833 1.17925 0.91888 0.91391 0.92492 1.19886 0.98212 1.18275 1.15623 0.89382 1.26880 0.95858 0.94145 1.01639 1.69868 1.20992 1.18054 1.36097 0.85108 0.79036 0.78907 0.76391 1.17479 1.19357 1.18909 1.21472 0.93775 1.00139 0.98578 0.91434 0.92328 0.91582 0.92188 0.91743 0.93867 0.92362 0.85267 0.85355 0.86588 0.86395 0.85930 0.84423 0.86526 0.90028 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 71.98 0.66 -0.76 16 2 C -0.09 -1.35 2.57 -10.80 -0.03 -1.38 16 3 C -0.16 -2.73 8.93 71.98 0.64 -2.09 16 4 C -0.15 -2.00 5.11 29.85 0.15 -1.85 16 5 C 0.36 8.40 6.95 29.10 0.20 8.60 16 6 O -0.46 -14.60 14.11 17.39 0.25 -14.35 16 7 C 0.00 -0.11 5.89 71.23 0.42 0.31 16 8 O -0.34 -13.30 8.99 -49.71 -0.45 -13.75 16 9 C 0.52 23.62 7.90 70.34 0.56 24.18 16 10 O -0.54 -26.19 16.12 19.93 0.32 -25.87 16 11 C -0.13 -6.45 5.87 -20.14 -0.12 -6.57 16 12 C -0.19 -8.29 9.62 22.71 0.22 -8.07 16 13 C -0.10 -4.21 10.01 22.17 0.22 -3.99 16 14 C -0.20 -9.58 9.78 22.77 0.22 -9.36 16 15 C 0.07 3.52 5.57 -21.32 -0.12 3.40 16 16 C -0.49 -26.09 9.05 23.47 0.21 -25.88 16 17 H 0.09 4.40 7.91 -2.91 -0.02 4.38 16 18 C 0.03 1.52 5.14 85.25 0.44 1.96 16 19 N -0.82 -44.49 10.95 21.82 0.24 -44.25 16 20 Si 0.99 38.30 29.60 68.60 2.03 40.33 16 21 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 22 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 24 C -0.12 -6.61 8.23 23.02 0.19 -6.42 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 1.11 7.96 -2.39 -0.02 1.10 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 1.01 5.96 -2.39 -0.01 0.99 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.12 2.75 8.14 -2.38 -0.02 2.73 16 35 H 0.12 2.73 8.14 -2.38 -0.02 2.71 16 36 H 0.12 5.03 7.59 -2.91 -0.02 5.01 16 37 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 39 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 40 H 0.11 6.55 5.74 -2.91 -0.02 6.53 16 Total: -1.00 -68.30 343.75 7.30 -61.01 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 1.04 Total: 24.79 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 3.87 Total: -27.91 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.24 Total: -44.25 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: 0.12 Total: -53.97 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -68.30 7.30 -61.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751645452.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.270 kcal (2) G-P(sol) polarization free energy of solvation -68.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds