Wall clock time and date at job start Tue Mar 31 2020 06:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20752 * 120.00330 * 2 1 4 4 C 1.50703 * 119.99774 * 179.97438 * 2 1 3 5 5 C 1.52995 * 109.47044 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46828 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46952 * 179.97438 * 6 5 4 8 8 O 1.45196 * 109.47200 * 179.97438 * 7 6 5 9 9 C 1.34780 * 117.00399 * 180.02562 * 8 7 6 10 10 O 1.21505 * 119.99405 * 0.02562 * 9 8 7 11 11 C 1.47501 * 120.00276 * 179.97438 * 9 8 7 12 12 C 1.40072 * 119.90126 * 179.97438 * 11 9 8 13 13 C 1.36300 * 120.10122 * 180.25903 * 12 11 9 14 14 C 1.40903 * 119.89735 * 359.51953 * 13 12 11 15 15 C 1.41086 * 120.09946 * 180.23584 * 14 13 12 16 16 H 1.08001 * 120.00081 * 204.81479 * 15 14 13 17 17 C 1.40248 * 120.00090 * 24.80544 * 15 14 13 18 18 N 1.30632 * 119.99956 * 17.73033 * 17 15 14 19 19 Si 1.86797 * 120.00167 * 197.73090 * 17 15 14 20 20 H 1.48494 * 109.47173 * 60.00085 * 19 17 15 21 21 H 1.48498 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47158 * 300.00145 * 19 17 15 23 23 C 1.40902 * 119.79905 * 0.50143 * 14 13 12 24 24 C 1.36295 * 119.90197 * 359.73140 * 23 14 13 25 25 H 1.08998 * 109.47664 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46926 * 300.00275 * 1 2 3 27 27 H 1.09005 * 109.46770 * 59.99780 * 1 2 3 28 28 H 1.09003 * 109.46819 * 60.00073 * 4 2 1 29 29 H 1.09002 * 109.47144 * 300.00306 * 4 2 1 30 30 H 1.08989 * 109.47605 * 60.00070 * 5 4 2 31 31 H 1.08998 * 109.46783 * 299.99467 * 5 4 2 32 32 H 1.09003 * 109.47460 * 59.99922 * 6 5 4 33 33 H 1.09002 * 109.47147 * 299.99700 * 6 5 4 34 34 H 1.09003 * 109.47228 * 60.00149 * 7 6 5 35 35 H 1.09002 * 109.47300 * 300.00035 * 7 6 5 36 36 H 1.08002 * 119.94620 * 359.97438 * 12 11 9 37 37 H 1.07995 * 120.04815 * 179.75273 * 13 12 11 38 38 H 0.97000 * 120.00424 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.04814 * 179.70677 * 23 14 13 40 40 H 1.07997 * 119.95010 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5296 -2.3507 0.0011 7 6 6.0339 -2.0712 0.0009 8 8 6.7598 -3.3287 0.0015 9 6 8.1058 -3.2583 0.0020 10 8 8.6574 -2.1757 0.0024 11 6 8.9090 -4.4954 0.0032 12 6 10.3077 -4.4197 0.0031 13 6 11.0540 -5.5603 -0.0011 14 6 10.4164 -6.8168 0.0047 15 6 11.1847 -8.0001 0.0054 16 1 10.7654 -8.9164 -0.3831 17 6 12.4931 -7.9864 0.5102 18 7 12.8851 -7.0081 1.2822 19 14 13.6752 -9.3669 0.0789 20 1 13.8595 -9.4188 -1.3936 21 1 14.9849 -9.1198 0.7337 22 1 13.1208 -10.6599 0.5542 23 6 9.0092 -6.8879 0.0043 24 6 8.2709 -5.7423 0.0037 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.9971 -1.8771 -0.8892 29 1 1.9971 -1.8764 0.8908 30 1 4.0277 -0.4539 0.8909 31 1 4.0283 -0.4544 -0.8890 32 1 4.2665 -2.9222 -0.8891 33 1 4.2660 -2.9225 0.8909 34 1 6.2973 -1.4997 0.8909 35 1 6.2972 -1.4997 -0.8891 36 1 10.7955 -3.4561 0.0019 37 1 12.1323 -5.5009 -0.0052 38 1 13.7899 -6.9988 1.6317 39 1 8.5163 -7.8489 0.0039 40 1 7.1923 -5.7959 0.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758678683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:57 Heat of formation + Delta-G solvation = -136.352188 kcal Electronic energy + Delta-G solvation = -21209.953589 eV Core-core repulsion = 17760.477770 eV Total energy + Delta-G solvation = -3449.475819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.82853 -39.51400 -37.49212 -36.03709 -34.71695 -33.96064 -31.40137 -30.30249 -29.64759 -29.08196 -26.23826 -24.35236 -22.19805 -21.32014 -21.02903 -19.90085 -19.71983 -17.58953 -16.89738 -16.50100 -16.21100 -15.88088 -15.73054 -15.40344 -15.21087 -14.51289 -14.07006 -13.59985 -13.31535 -13.21003 -12.90865 -12.82383 -12.45863 -12.24222 -12.16872 -12.01125 -11.88349 -11.77393 -11.41994 -11.27119 -11.11849 -11.01620 -10.89820 -10.68080 -10.14338 -10.04968 -9.94019 -9.58125 -9.43157 -9.38715 -7.75366 -7.64566 -7.09486 -4.68040 1.64115 2.07048 2.87576 2.92078 2.95098 3.02617 3.31550 3.64511 3.70805 3.78617 4.47184 4.51748 4.67251 4.71371 4.95702 4.98896 5.12547 5.13137 5.34254 5.39958 5.51047 5.51482 5.60411 5.64305 5.77058 6.00056 6.06475 6.15135 6.25064 6.25955 6.74077 6.80742 6.98961 7.05560 7.15926 7.19067 7.40646 7.61202 7.78409 7.87054 8.00482 8.35579 8.55959 8.68857 8.77633 9.81891 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.052563 B = 0.002176 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.564846 B =12863.664027 C =13286.987782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.352 3.648 3 O -0.459 6.459 4 C -0.172 4.172 5 C -0.111 4.111 6 C -0.118 4.118 7 C 0.067 3.933 8 O -0.363 6.363 9 C 0.513 3.487 10 O -0.551 6.551 11 C -0.274 4.274 12 C -0.033 4.033 13 C -0.185 4.185 14 C 0.131 3.869 15 C -0.435 4.435 16 H 0.087 0.913 17 C 0.072 3.928 18 N -0.764 5.764 19 Si 0.916 3.084 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.240 4.240 24 C -0.028 4.028 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.290 0.710 39 H 0.100 0.900 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.645 4.613 -1.554 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.228 3.772 3 O -0.333 6.333 4 C -0.209 4.209 5 C -0.148 4.148 6 C -0.155 4.155 7 C -0.007 4.007 8 O -0.281 6.281 9 C 0.366 3.634 10 O -0.445 6.445 11 C -0.277 4.277 12 C -0.052 4.052 13 C -0.204 4.204 14 C 0.127 3.873 15 C -0.462 4.462 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.386 5.386 19 Si 0.740 3.260 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.186 1.186 23 C -0.260 4.260 24 C -0.046 4.046 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.990 5.582 -1.394 16.994 hybrid contribution 0.466 -0.480 -0.021 0.670 sum -15.525 5.101 -1.414 16.402 Atomic orbital electron populations 1.22281 0.94614 1.04645 1.04711 1.24705 0.91938 0.90456 0.70098 1.90431 1.71943 1.35328 1.35625 1.22173 0.96349 0.97374 1.04989 1.21317 0.92754 0.97037 1.03721 1.21544 0.92628 0.97680 1.03678 1.22808 0.90798 0.84999 1.02103 1.86557 1.21193 1.34834 1.85548 1.21583 0.79575 0.90256 0.72022 1.90700 1.72316 1.31106 1.50367 1.18239 0.92320 0.89042 1.28089 1.20468 0.91539 0.97936 0.95242 1.20979 0.99711 0.91191 1.08478 1.17846 0.91310 0.93230 0.84868 1.19886 0.96689 0.96760 1.32870 0.89505 1.26167 0.99040 0.97342 0.92468 1.69731 1.19472 1.29812 1.19615 0.86213 0.78643 0.80869 0.80307 1.18366 1.19953 1.18581 1.20714 0.93981 0.96427 1.14851 1.20538 0.97851 0.91906 0.94345 0.89945 0.89122 0.89132 0.88075 0.88070 0.91070 0.91087 0.90757 0.90740 0.91878 0.91882 0.88048 0.85937 0.89902 0.88217 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.93 10.33 36.01 0.37 -0.56 16 2 C 0.35 2.77 7.27 -29.03 -0.21 2.56 16 3 O -0.46 -5.62 16.72 6.01 0.10 -5.52 16 4 C -0.17 -1.13 5.55 -27.88 -0.15 -1.29 16 5 C -0.11 -1.05 4.50 -26.73 -0.12 -1.17 16 6 C -0.12 -1.28 5.59 -26.73 -0.15 -1.43 16 7 C 0.07 1.03 5.48 37.16 0.20 1.23 16 8 O -0.36 -6.98 9.45 -40.71 -0.38 -7.37 16 9 C 0.51 11.63 7.89 34.51 0.27 11.90 16 10 O -0.55 -13.45 16.11 -19.27 -0.31 -13.76 16 11 C -0.27 -6.54 5.89 -104.75 -0.62 -7.16 16 12 C -0.03 -0.81 9.52 -39.59 -0.38 -1.19 16 13 C -0.18 -4.69 8.63 -39.27 -0.34 -5.03 16 14 C 0.13 3.32 5.57 -106.80 -0.60 2.72 16 15 C -0.44 -10.63 9.04 -37.75 -0.34 -10.98 16 16 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 17 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 18 N -0.76 -18.35 10.95 55.56 0.61 -17.74 16 19 Si 0.92 17.01 29.60 -169.99 -5.03 11.98 16 20 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 21 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 23 C -0.24 -5.63 9.73 -39.27 -0.38 -6.01 16 24 C -0.03 -0.62 9.55 -39.59 -0.38 -1.00 16 25 H 0.08 0.20 8.00 -51.93 -0.42 -0.21 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.74 8.10 -51.94 -0.42 0.32 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 37 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 38 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 39 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.10 2.03 7.59 -52.49 -0.40 1.64 16 LS Contribution 348.81 15.07 5.26 5.26 Total: -1.00 -29.96 348.81 -8.40 -38.36 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.73 Total: 4.62 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.91 Total: -15.82 kcal Atomic # 7 Polarization: -18.35 SS G_CDS: 0.61 Total: -17.74 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.59 Total: -26.65 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.96 -8.40 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758678683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.991 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds