Wall clock time and date at job start Tue Mar 31 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20752 * 120.00330 * 2 1 4 4 C 1.50703 * 119.99774 * 179.97438 * 2 1 3 5 5 C 1.52995 * 109.47044 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46828 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46952 * 179.97438 * 6 5 4 8 8 O 1.45196 * 109.47200 * 179.97438 * 7 6 5 9 9 C 1.34780 * 117.00399 * 180.02562 * 8 7 6 10 10 O 1.21505 * 119.99405 * 0.02562 * 9 8 7 11 11 C 1.47501 * 120.00276 * 179.97438 * 9 8 7 12 12 C 1.40072 * 119.90126 * 179.97438 * 11 9 8 13 13 C 1.36300 * 120.10122 * 180.25903 * 12 11 9 14 14 C 1.40903 * 119.89735 * 359.51953 * 13 12 11 15 15 C 1.41086 * 120.09946 * 180.23584 * 14 13 12 16 16 H 1.08001 * 120.00081 * 204.81479 * 15 14 13 17 17 C 1.40248 * 120.00090 * 24.80544 * 15 14 13 18 18 N 1.30632 * 119.99956 * 17.73033 * 17 15 14 19 19 Si 1.86797 * 120.00167 * 197.73090 * 17 15 14 20 20 H 1.48494 * 109.47173 * 60.00085 * 19 17 15 21 21 H 1.48498 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47158 * 300.00145 * 19 17 15 23 23 C 1.40902 * 119.79905 * 0.50143 * 14 13 12 24 24 C 1.36295 * 119.90197 * 359.73140 * 23 14 13 25 25 H 1.08998 * 109.47664 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46926 * 300.00275 * 1 2 3 27 27 H 1.09005 * 109.46770 * 59.99780 * 1 2 3 28 28 H 1.09003 * 109.46819 * 60.00073 * 4 2 1 29 29 H 1.09002 * 109.47144 * 300.00306 * 4 2 1 30 30 H 1.08989 * 109.47605 * 60.00070 * 5 4 2 31 31 H 1.08998 * 109.46783 * 299.99467 * 5 4 2 32 32 H 1.09003 * 109.47460 * 59.99922 * 6 5 4 33 33 H 1.09002 * 109.47147 * 299.99700 * 6 5 4 34 34 H 1.09003 * 109.47228 * 60.00149 * 7 6 5 35 35 H 1.09002 * 109.47300 * 300.00035 * 7 6 5 36 36 H 1.08002 * 119.94620 * 359.97438 * 12 11 9 37 37 H 1.07995 * 120.04815 * 179.75273 * 13 12 11 38 38 H 0.97000 * 120.00424 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.04814 * 179.70677 * 23 14 13 40 40 H 1.07997 * 119.95010 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5296 -2.3507 0.0011 7 6 6.0339 -2.0712 0.0009 8 8 6.7598 -3.3287 0.0015 9 6 8.1058 -3.2583 0.0020 10 8 8.6574 -2.1757 0.0024 11 6 8.9090 -4.4954 0.0032 12 6 10.3077 -4.4197 0.0031 13 6 11.0540 -5.5603 -0.0011 14 6 10.4164 -6.8168 0.0047 15 6 11.1847 -8.0001 0.0054 16 1 10.7654 -8.9164 -0.3831 17 6 12.4931 -7.9864 0.5102 18 7 12.8851 -7.0081 1.2822 19 14 13.6752 -9.3669 0.0789 20 1 13.8595 -9.4188 -1.3936 21 1 14.9849 -9.1198 0.7337 22 1 13.1208 -10.6599 0.5542 23 6 9.0092 -6.8879 0.0043 24 6 8.2709 -5.7423 0.0037 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.9971 -1.8771 -0.8892 29 1 1.9971 -1.8764 0.8908 30 1 4.0277 -0.4539 0.8909 31 1 4.0283 -0.4544 -0.8890 32 1 4.2665 -2.9222 -0.8891 33 1 4.2660 -2.9225 0.8909 34 1 6.2973 -1.4997 0.8909 35 1 6.2972 -1.4997 -0.8891 36 1 10.7955 -3.4561 0.0019 37 1 12.1323 -5.5009 -0.0052 38 1 13.7899 -6.9988 1.6317 39 1 8.5163 -7.8489 0.0039 40 1 7.1923 -5.7959 0.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758678683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:56 Heat of formation + Delta-G solvation = -150.724833 kcal Electronic energy + Delta-G solvation = -21210.576833 eV Core-core repulsion = 17760.477770 eV Total energy + Delta-G solvation = -3450.099063 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25657 -40.46728 -39.28434 -37.55408 -35.81570 -35.71409 -32.29704 -31.90862 -31.43455 -29.92919 -27.97061 -25.45314 -23.85464 -22.88469 -22.24052 -21.53505 -20.42965 -19.41597 -18.61881 -17.73134 -17.62252 -17.13448 -16.70401 -16.60304 -15.95101 -15.76260 -15.52263 -15.26640 -15.00133 -14.36394 -14.27160 -14.03982 -13.70525 -13.40863 -13.31891 -13.07289 -12.99085 -12.86672 -12.73327 -12.69484 -12.62131 -12.39360 -12.10744 -11.84753 -11.78953 -11.41030 -11.39935 -11.25248 -11.15004 -10.55150 -9.64034 -9.53072 -8.85142 -6.55339 0.23810 1.05947 1.14125 1.37235 1.42328 1.53534 1.86238 1.88805 2.14628 2.68317 3.19019 3.62607 3.77213 3.86841 4.06363 4.20276 4.22757 4.28308 4.34375 4.39388 4.46873 4.61363 4.62680 4.77881 4.82107 4.87349 4.92555 4.95264 4.98950 5.16213 5.20528 5.21839 5.23790 5.30806 5.49020 5.54852 5.78095 5.93176 5.98186 6.14509 6.48951 6.63105 6.69700 6.82232 7.02238 8.09414 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.052563 B = 0.002176 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.564846 B =12863.664027 C =13286.987782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.353 3.647 3 O -0.515 6.515 4 C -0.168 4.168 5 C -0.109 4.109 6 C -0.104 4.104 7 C 0.058 3.942 8 O -0.357 6.357 9 C 0.517 3.483 10 O -0.577 6.577 11 C -0.293 4.293 12 C -0.043 4.043 13 C -0.202 4.202 14 C 0.103 3.897 15 C -0.456 4.456 16 H 0.098 0.902 17 C 0.033 3.967 18 N -0.795 5.795 19 Si 0.993 3.007 20 H -0.257 1.257 21 H -0.267 1.267 22 H -0.252 1.252 23 C -0.249 4.249 24 C -0.020 4.020 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.299 0.701 39 H 0.120 0.880 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.457 2.624 -1.746 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.232 3.768 3 O -0.393 6.393 4 C -0.205 4.205 5 C -0.146 4.146 6 C -0.142 4.142 7 C -0.016 4.016 8 O -0.275 6.275 9 C 0.369 3.631 10 O -0.473 6.473 11 C -0.295 4.295 12 C -0.062 4.062 13 C -0.222 4.222 14 C 0.100 3.900 15 C -0.482 4.482 16 H 0.116 0.884 17 C -0.187 4.187 18 N -0.417 5.417 19 Si 0.812 3.188 20 H -0.181 1.181 21 H -0.192 1.192 22 H -0.175 1.175 23 C -0.268 4.268 24 C -0.038 4.038 25 H 0.129 0.871 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.138 0.862 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.850 3.584 -1.582 18.275 hybrid contribution 0.980 0.181 0.066 0.999 sum -16.870 3.766 -1.516 17.351 Atomic orbital electron populations 1.22297 0.91803 1.06655 1.05011 1.25320 0.93608 0.89984 0.67853 1.90428 1.73223 1.37130 1.38499 1.22227 0.93620 0.97304 1.07336 1.21265 0.95047 0.95888 1.02434 1.21520 0.89049 0.98616 1.04974 1.23224 0.93161 0.83543 1.01650 1.86521 1.19330 1.36844 1.84765 1.21409 0.80743 0.89403 0.71496 1.90680 1.73171 1.31870 1.51573 1.18449 0.92212 0.90387 1.28483 1.20532 0.92468 0.97568 0.95630 1.20937 0.99252 0.91898 1.10078 1.18221 0.92646 0.93511 0.85642 1.20254 0.97872 0.96917 1.33201 0.88371 1.27114 1.00208 0.99836 0.91592 1.69777 1.20419 1.31509 1.20027 0.85072 0.76240 0.77568 0.79936 1.18098 1.19171 1.17550 1.20965 0.93391 0.97712 1.14733 1.20779 0.99253 0.90923 0.92868 0.87118 0.88748 0.88732 0.85539 0.85601 0.92530 0.92461 0.89341 0.89450 0.92525 0.92363 0.88511 0.87157 0.88985 0.86175 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.30 10.33 71.24 0.74 -0.57 16 2 C 0.35 5.00 7.27 29.10 0.21 5.21 16 3 O -0.51 -12.70 16.72 -1.43 -0.02 -12.73 16 4 C -0.17 -1.75 5.55 29.85 0.17 -1.58 16 5 C -0.11 -1.94 4.50 30.59 0.14 -1.80 16 6 C -0.10 -2.05 5.59 30.60 0.17 -1.88 16 7 C 0.06 1.74 5.48 71.98 0.39 2.13 16 8 O -0.36 -13.40 9.45 -56.91 -0.54 -13.94 16 9 C 0.52 23.52 7.89 70.26 0.55 24.07 16 10 O -0.58 -28.74 16.11 19.82 0.32 -28.42 16 11 C -0.29 -14.06 5.89 -19.95 -0.12 -14.18 16 12 C -0.04 -2.20 9.52 22.26 0.21 -1.99 16 13 C -0.20 -10.64 8.63 22.47 0.19 -10.44 16 14 C 0.10 5.29 5.57 -21.28 -0.12 5.17 16 15 C -0.46 -22.21 9.04 23.46 0.21 -22.00 16 16 H 0.10 4.41 7.91 -2.91 -0.02 4.38 16 17 C 0.03 1.49 5.14 85.36 0.44 1.92 16 18 N -0.79 -38.50 10.95 21.88 0.24 -38.26 16 19 Si 0.99 33.87 29.60 68.60 2.03 35.90 16 20 H -0.26 -8.62 7.11 99.48 0.71 -7.92 16 21 H -0.27 -8.73 7.11 99.48 0.71 -8.02 16 22 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 23 C -0.25 -11.48 9.73 22.47 0.22 -11.26 16 24 C -0.02 -0.87 9.55 22.26 0.21 -0.66 16 25 H 0.11 0.10 8.00 -2.39 -0.02 0.08 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 31 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 4.88 7.63 -2.91 -0.02 4.85 16 37 H 0.11 5.93 6.16 -2.91 -0.02 5.91 16 38 H 0.30 12.94 8.29 -92.71 -0.77 12.17 16 39 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.13 4.92 7.59 -2.91 -0.02 4.90 16 Total: -1.00 -66.72 348.81 6.68 -60.04 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 1.03 Total: 25.24 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 3.62 Total: -27.84 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.24 Total: -38.26 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -0.24 Total: -55.09 kcal Atomic # 14 Polarization: 33.87 SS G_CDS: 2.03 Total: 35.90 kcal Total: -66.72 6.68 -60.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758678683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.686 kcal (2) G-P(sol) polarization free energy of solvation -66.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds